Wall clock time and date at job start Sun Mar 7 2021 07:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45194 * 109.47412 * 2 1 4 4 C 1.34227 * 117.00229 * 180.02562 * 3 2 1 5 5 O 1.20831 * 120.00030 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00170 * 179.97438 * 4 3 2 7 7 H 1.08997 * 112.85034 * 311.19425 * 6 4 3 8 8 C 1.54055 * 113.69527 * 82.45975 * 6 4 3 9 9 C 1.53786 * 86.98467 * 139.98803 * 8 6 4 10 10 O 1.42903 * 113.60772 * 89.16391 * 9 8 6 11 11 C 1.52997 * 113.61626 * 219.97663 * 9 8 6 12 12 N 1.46496 * 109.47396 * 284.13972 * 11 9 8 13 13 C 1.34776 * 120.00037 * 180.02562 * 12 11 9 14 14 O 1.21590 * 120.00023 * 359.97438 * 13 12 11 15 15 C 1.47534 * 120.00024 * 180.02562 * 13 12 11 16 16 C 1.40142 * 120.19204 * 179.72104 * 15 13 12 17 17 O 1.35661 * 120.14577 * 359.97438 * 16 15 13 18 18 C 1.38705 * 119.70183 * 179.79039 * 16 15 13 19 19 C 1.50696 * 119.96068 * 180.20757 * 18 16 15 20 20 O 1.42899 * 109.47321 * 75.27643 * 19 18 16 21 21 Si 1.86300 * 109.47403 * 195.28070 * 19 18 16 22 22 C 1.38053 * 120.08284 * 0.48945 * 18 16 15 23 23 C 1.38554 * 120.39024 * 359.73998 * 22 18 16 24 24 C 1.50699 * 119.84740 * 180.02562 * 23 22 18 25 25 C 1.37790 * 120.30096 * 0.02562 * 23 22 18 26 26 C 1.53780 * 87.17287 * 334.57388 * 9 8 6 27 27 H 1.08997 * 109.47220 * 300.00441 * 1 2 3 28 28 H 1.09006 * 109.46798 * 60.00260 * 1 2 3 29 29 H 1.08997 * 109.47019 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47099 * 239.99358 * 2 1 3 31 31 H 1.09005 * 109.46867 * 120.00289 * 2 1 3 32 32 H 1.09005 * 113.61539 * 25.48862 * 8 6 4 33 33 H 1.08997 * 113.69669 * 254.50773 * 8 6 4 34 34 H 0.96700 * 114.00311 * 80.86568 * 10 9 8 35 35 H 1.08998 * 109.46862 * 44.14038 * 11 9 8 36 36 H 1.09001 * 109.46941 * 164.13797 * 11 9 8 37 37 H 0.96999 * 120.00105 * 359.97438 * 12 11 9 38 38 H 0.96697 * 114.00116 * 90.00097 * 17 16 15 39 39 H 1.09006 * 109.47114 * 315.27634 * 19 18 16 40 40 H 0.96699 * 114.00343 * 180.02562 * 20 19 18 41 41 H 1.48498 * 109.99788 * 300.00164 * 21 19 18 42 42 H 1.48499 * 109.99936 * 61.31846 * 21 19 18 43 43 H 1.08000 * 119.80938 * 179.76821 * 22 18 16 44 44 H 1.09001 * 109.47062 * 270.01920 * 24 23 22 45 45 H 1.08999 * 109.47407 * 30.02759 * 24 23 22 46 46 H 1.09004 * 109.46744 * 150.02572 * 24 23 22 47 47 H 1.07994 * 120.04718 * 179.97438 * 25 23 22 48 48 H 1.09004 * 113.61199 * 140.02266 * 26 9 8 49 49 H 1.09001 * 113.61194 * 270.92229 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.4710 3.5811 -0.7570 8 6 3.9869 3.5805 1.3971 9 6 5.3569 4.1441 0.9840 10 8 5.2818 5.4206 0.3461 11 6 6.4006 4.0989 2.1018 12 7 6.1266 5.1645 3.0691 13 6 6.9226 5.3182 4.1457 14 8 7.8678 4.5723 4.3145 15 6 6.6463 6.3910 5.1202 16 6 7.4679 6.5508 6.2442 17 8 8.5214 5.7192 6.4419 18 6 7.2015 7.5655 7.1516 19 6 8.0839 7.7456 8.3597 20 8 9.3189 8.3448 7.9625 21 14 7.2284 8.8468 9.5952 22 6 6.1254 8.4070 6.9523 23 6 5.3078 8.2493 5.8448 24 6 4.1368 9.1752 5.6391 25 6 5.5607 7.2497 4.9308 26 6 5.4583 2.9679 -0.0016 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5140 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.0400 2.8554 2.2093 33 1 3.2309 4.3481 1.5624 34 1 5.1944 6.1626 0.9600 35 1 6.3543 3.1323 2.6032 36 1 7.3943 4.2406 1.6769 37 1 5.3727 5.7598 2.9343 38 1 9.3460 6.0270 6.0416 39 1 8.2808 6.7744 8.8139 40 1 9.9378 8.4904 8.6912 41 1 6.9543 10.1740 8.9881 42 1 5.9580 8.2197 10.0402 43 1 5.9198 9.1933 7.6636 44 1 3.2542 8.7581 6.1241 45 1 4.3634 10.1494 6.0722 46 1 3.9458 9.2877 4.5718 47 1 4.9206 7.1301 4.0693 48 1 5.8893 3.2413 -0.9647 49 1 5.9129 2.0756 0.4288 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16466198_13422088.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:35 Heat of formation + Delta-G solvation = -184.622909 kcal Electronic energy + Delta-G solvation = -33276.766326 eV Core-core repulsion = 28558.075518 eV Total energy + Delta-G solvation = -4718.690808 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.17258 -41.69345 -40.65016 -39.67700 -38.07242 -37.66656 -37.57777 -36.01290 -35.41626 -33.34108 -33.05589 -32.70618 -29.68898 -27.74472 -27.15698 -26.84218 -26.51669 -24.72905 -23.72495 -22.04422 -21.83072 -21.54837 -20.87101 -19.64370 -19.06043 -18.59122 -18.42416 -17.93299 -17.68769 -17.44250 -17.26118 -16.84466 -16.62765 -16.45652 -16.06085 -15.95967 -15.43751 -15.16765 -15.07681 -15.02634 -14.72985 -14.72282 -14.39784 -14.30935 -14.23550 -13.91934 -13.80302 -13.61597 -13.31230 -13.26976 -13.10264 -12.99300 -12.83020 -12.68259 -12.63194 -12.50992 -12.38607 -12.00849 -11.79245 -11.71606 -11.53021 -11.45870 -11.03675 -10.84746 -10.37427 -10.33551 -10.15065 -9.60351 -5.06916 -0.42346 -0.02683 1.15263 1.17541 1.53891 1.61307 1.68719 1.84216 1.89864 2.47853 2.65741 3.00520 3.13863 3.17703 3.23819 3.31743 3.36233 3.48558 3.50612 3.73895 3.84558 3.93160 3.93679 3.98425 3.98956 4.06582 4.17232 4.25753 4.27530 4.35584 4.44662 4.45973 4.46463 4.49597 4.61476 4.65274 4.68945 4.71733 4.78000 4.80863 4.83035 4.87889 4.98263 4.99879 5.08808 5.16824 5.21244 5.45718 5.47690 6.21868 6.30138 6.53517 6.72093 6.74301 7.10385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.470 3.530 5 O -0.504 6.504 6 C -0.102 4.102 7 H 0.132 0.868 8 C -0.146 4.146 9 C 0.097 3.903 10 O -0.530 6.530 11 C 0.105 3.895 12 N -0.731 5.731 13 C 0.563 3.437 14 O -0.511 6.511 15 C -0.164 4.164 16 C 0.193 3.807 17 O -0.472 6.472 18 C -0.105 4.105 19 C -0.069 4.069 20 O -0.547 6.547 21 Si 0.687 3.313 22 C -0.081 4.081 23 C -0.096 4.096 24 C -0.117 4.117 25 C -0.068 4.068 26 C -0.099 4.099 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.378 0.622 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.395 0.605 38 H 0.401 0.599 39 H 0.081 0.919 40 H 0.385 0.615 41 H -0.249 1.249 42 H -0.253 1.253 43 H 0.130 0.870 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.132 0.868 48 H 0.095 0.905 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.534 4.683 2.357 6.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.313 3.687 5 O -0.391 6.391 6 C -0.121 4.121 7 H 0.150 0.850 8 C -0.184 4.184 9 C 0.055 3.945 10 O -0.336 6.336 11 C -0.019 4.019 12 N -0.386 5.386 13 C 0.350 3.650 14 O -0.386 6.386 15 C -0.167 4.167 16 C 0.146 3.854 17 O -0.283 6.283 18 C -0.106 4.106 19 C -0.179 4.179 20 O -0.354 6.354 21 Si 0.588 3.412 22 C -0.098 4.098 23 C -0.097 4.097 24 C -0.174 4.174 25 C -0.086 4.086 26 C -0.137 4.137 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.226 0.774 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.260 0.740 39 H 0.099 0.901 40 H 0.233 0.767 41 H -0.174 1.174 42 H -0.178 1.178 43 H 0.147 0.853 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.092 0.908 47 H 0.149 0.851 48 H 0.113 0.887 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.989 3.520 1.830 5.626 hybrid contribution -0.204 0.285 -0.301 0.462 sum -4.193 3.806 1.529 5.866 Atomic orbital electron populations 1.21821 0.92313 1.03282 1.03642 1.23096 0.95629 0.79854 1.02784 1.86514 1.24361 1.32762 1.83673 1.23516 0.80707 0.92292 0.72181 1.90691 1.60511 1.42901 1.45046 1.22462 0.97281 0.91037 1.01328 0.85008 1.23717 0.98211 1.01024 0.95404 1.22381 0.93671 0.85530 0.92896 1.86598 1.96045 1.14499 1.36412 1.21945 0.99491 0.91818 0.88600 1.45781 1.32464 1.35314 1.25026 1.17958 0.82448 0.83903 0.80672 1.90858 1.28617 1.44399 1.74704 1.20325 1.00025 0.99508 0.96886 1.18166 0.89350 0.87749 0.90112 1.84670 1.19362 1.46191 1.78119 1.19670 0.97589 0.95887 0.97474 1.24598 0.89795 1.03986 0.99517 1.86440 1.27037 1.83318 1.38560 0.95052 0.82831 0.79178 0.84135 1.21026 0.94024 0.97773 0.97023 1.19768 0.97901 0.97417 0.94566 1.20842 0.95261 0.98091 1.03163 1.21079 0.95405 0.93430 0.98729 1.23041 0.93224 0.96561 1.00885 0.91396 0.91348 0.89980 0.91039 0.91106 0.88306 0.89089 0.77397 0.89642 0.89765 0.76964 0.74000 0.90127 0.76749 1.17419 1.17775 0.85273 0.90534 0.91106 0.90768 0.85056 0.88669 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.22 10.29 37.16 0.38 0.61 16 2 C 0.06 0.03 6.19 37.16 0.23 0.26 16 3 O -0.36 -0.66 10.22 -39.25 -0.40 -1.06 16 4 C 0.47 1.00 7.49 36.01 0.27 1.27 16 5 O -0.50 -2.47 15.65 -18.75 -0.29 -2.77 16 6 C -0.10 0.06 4.20 -90.82 -0.38 -0.32 16 7 H 0.13 -0.20 8.14 -51.93 -0.42 -0.62 16 8 C -0.15 0.31 7.04 -25.77 -0.18 0.13 16 9 C 0.10 -0.18 1.38 -89.81 -0.12 -0.30 16 10 O -0.53 0.96 13.41 -35.23 -0.47 0.49 16 11 C 0.11 -0.06 5.24 -4.05 -0.02 -0.09 16 12 N -0.73 0.76 5.28 -61.35 -0.32 0.44 16 13 C 0.56 1.48 7.76 -12.47 -0.10 1.39 16 14 O -0.51 -3.27 15.16 -16.59 -0.25 -3.52 16 15 C -0.16 -0.31 5.89 -104.84 -0.62 -0.93 16 16 C 0.19 0.61 6.69 -38.69 -0.26 0.35 16 17 O -0.47 -1.75 10.90 -40.56 -0.44 -2.19 16 18 C -0.11 -0.23 5.30 -104.52 -0.55 -0.79 16 19 C -0.07 -0.01 2.37 36.00 0.09 0.07 16 20 O -0.55 0.12 12.86 -35.23 -0.45 -0.33 16 21 Si 0.69 -0.97 30.19 -169.99 -5.13 -6.10 16 22 C -0.08 -0.10 8.30 -39.53 -0.33 -0.43 16 23 C -0.10 0.02 5.87 -104.67 -0.61 -0.60 16 24 C -0.12 0.30 10.00 36.01 0.36 0.66 16 25 C -0.07 0.05 9.18 -39.20 -0.36 -0.31 16 26 C -0.10 0.06 6.80 -25.92 -0.18 -0.11 16 27 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 28 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 30 H 0.07 0.04 8.13 -51.93 -0.42 -0.38 16 31 H 0.07 0.04 8.13 -51.93 -0.42 -0.38 16 32 H 0.10 -0.16 8.02 -51.93 -0.42 -0.58 16 33 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 34 H 0.38 -1.92 7.72 45.56 0.35 -1.57 16 35 H 0.09 0.03 8.09 -51.93 -0.42 -0.39 16 36 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 37 H 0.39 -1.63 5.45 -40.82 -0.22 -1.85 16 38 H 0.40 0.43 9.06 45.56 0.41 0.84 16 39 H 0.08 -0.01 7.82 -51.93 -0.41 -0.42 16 40 H 0.38 -1.93 8.74 45.56 0.40 -1.53 16 41 H -0.25 -0.22 6.74 56.52 0.38 0.16 16 42 H -0.25 -0.30 7.11 56.52 0.40 0.10 16 43 H 0.13 0.08 4.87 -52.49 -0.26 -0.18 16 44 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 45 H 0.07 -0.18 8.08 -51.93 -0.42 -0.60 16 46 H 0.07 -0.29 8.08 -51.93 -0.42 -0.71 16 47 H 0.13 -0.56 6.40 -52.49 -0.34 -0.90 16 48 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 49 H 0.11 0.00 7.40 -51.93 -0.38 -0.38 16 LS Contribution 408.64 15.07 6.16 6.16 Total: 0.00 -11.80 408.64 -9.56 -21.36 By element: Atomic # 1 Polarization: -7.77 SS G_CDS: -5.56 Total: -13.33 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.39 Total: 0.85 kcal Atomic # 7 Polarization: 0.76 SS G_CDS: -0.32 Total: 0.44 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -2.31 Total: -9.37 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: -5.13 Total: -6.10 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -11.80 -9.56 -21.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_13422088.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.266 kcal (2) G-P(sol) polarization free energy of solvation -11.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds