Wall clock time and date at job start Sun Mar 7 2021 07:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 H 1.09004 * 112.85403 * 50.32645 * 6 4 3 8 8 C 1.53777 * 113.61736 * 181.52975 * 6 4 3 9 9 C 1.53781 * 87.08386 * 139.97799 * 8 6 4 10 10 O 1.42901 * 113.61503 * 89.11530 * 9 8 6 11 11 C 1.52999 * 113.61326 * 219.93499 * 9 8 6 12 12 N 1.46496 * 109.47146 * 179.97438 * 11 9 8 13 13 C 1.34781 * 120.00303 * 180.02562 * 12 11 9 14 14 O 1.21612 * 119.99779 * 359.97438 * 13 12 11 15 15 C 1.47380 * 119.99879 * 180.02562 * 13 12 11 16 16 C 1.36413 * 127.19569 * 359.68287 * 15 13 12 17 17 O 1.33657 * 108.39666 * 179.83779 * 16 15 13 18 18 C 1.34213 * 110.90670 * 0.44573 * 17 16 15 19 19 C 1.50702 * 125.43515 * 179.72374 * 18 17 16 20 20 O 1.42904 * 109.46830 * 120.00147 * 19 18 17 21 21 Si 1.86295 * 109.47313 * 0.02562 * 19 18 17 22 22 C 1.34181 * 109.12506 * 359.72698 * 18 17 16 23 23 C 1.53790 * 113.61063 * 279.13608 * 6 4 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 26 26 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 27 27 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 29 29 H 1.09002 * 113.61542 * 254.52757 * 8 6 4 30 30 H 1.08998 * 113.61567 * 25.42850 * 8 6 4 31 31 H 0.96701 * 113.99964 * 180.02562 * 10 9 8 32 32 H 1.08996 * 109.47509 * 299.99583 * 11 9 8 33 33 H 1.09006 * 109.47553 * 59.99862 * 11 9 8 34 34 H 0.97001 * 120.00450 * 359.97438 * 12 11 9 35 35 H 1.08002 * 125.79768 * 359.97438 * 16 15 13 36 36 H 1.08990 * 109.47299 * 240.00300 * 19 18 17 37 37 H 0.96701 * 114.00270 * 300.00535 * 20 19 18 38 38 H 1.48506 * 110.00153 * 58.67777 * 21 19 18 39 39 H 1.48496 * 110.00110 * 179.97438 * 21 19 18 40 40 H 1.07996 * 127.01778 * 179.97438 * 22 18 17 41 41 H 1.08995 * 113.61221 * 334.55991 * 23 6 4 42 42 H 1.08992 * 113.61243 * 105.47010 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 1 3.4895 3.5736 0.7743 8 6 5.4575 2.9685 -0.0359 9 6 5.3319 4.1532 -1.0084 10 8 5.2727 5.4241 -0.3578 11 6 6.3480 4.1178 -2.1518 12 7 6.1478 5.2813 -3.0191 13 6 6.9339 5.4600 -4.0993 14 8 7.8097 4.6555 -4.3536 15 6 6.7327 6.6309 -4.9714 16 6 5.7989 7.6149 -4.8285 17 8 5.9541 8.4917 -5.8253 18 6 6.9563 8.1210 -6.6375 19 6 7.4073 8.8684 -7.8660 20 8 8.7759 9.2510 -7.7151 21 14 6.3579 10.3918 -8.0862 22 6 7.4926 6.9789 -6.1810 23 6 3.9497 3.5927 -1.3899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 5.9121 3.2336 0.9187 30 1 5.9015 2.0801 -0.4850 31 1 5.1932 6.1731 -0.9643 32 1 7.3576 4.1395 -1.7416 33 1 6.2109 3.2050 -2.7316 34 1 5.4490 5.9229 -2.8165 35 1 5.0612 7.6764 -4.0421 36 1 7.3038 8.2261 -8.7404 37 1 8.9424 9.8248 -6.9548 38 1 6.4658 11.2608 -6.8868 39 1 6.7930 11.1380 -9.2941 40 1 8.3142 6.4277 -6.6140 41 1 3.9807 2.8752 -2.2098 42 1 3.1887 4.3608 -1.5268 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_13456056.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:54 Heat of formation + Delta-G solvation = -155.167391 kcal Electronic energy + Delta-G solvation = -27193.244817 eV Core-core repulsion = 22915.132674 eV Total energy + Delta-G solvation = -4278.112143 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.71522 -42.13092 -40.94417 -39.96479 -38.16427 -37.77102 -36.05566 -35.42067 -33.96535 -32.68212 -31.96475 -29.69507 -27.08098 -26.82816 -26.29150 -24.54937 -23.63720 -22.33409 -21.93926 -21.18208 -20.77567 -19.60912 -18.86644 -18.19113 -17.78725 -17.67922 -17.55002 -17.38099 -17.32022 -16.76375 -16.44038 -16.10907 -16.02295 -15.74213 -15.23008 -15.00150 -14.75231 -14.45010 -14.22723 -14.16937 -13.97748 -13.80616 -13.57662 -13.51581 -13.27723 -12.97620 -12.94560 -12.78130 -12.56817 -12.27743 -12.13883 -11.77173 -11.58135 -11.50447 -11.27778 -10.99648 -10.92864 -10.77139 -10.32878 -9.78292 -4.90395 0.26098 0.80641 1.04681 1.19728 1.53840 1.60273 1.75954 1.90339 1.98229 2.21252 2.84910 3.09826 3.20862 3.34020 3.42052 3.46405 3.52589 3.55480 3.90567 3.95473 3.97404 4.03088 4.21268 4.30530 4.31500 4.33009 4.43339 4.51844 4.59064 4.66524 4.68007 4.80437 4.87281 4.88407 4.90113 4.90814 5.10574 5.11441 5.13267 5.17386 5.41568 5.83294 6.32521 6.35533 6.63316 6.64447 7.06936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.541 6.541 6 C -0.101 4.101 7 H 0.147 0.853 8 C -0.110 4.110 9 C 0.117 3.883 10 O -0.537 6.537 11 C 0.108 3.892 12 N -0.707 5.707 13 C 0.589 3.411 14 O -0.585 6.585 15 C -0.271 4.271 16 C 0.072 3.928 17 O -0.163 6.163 18 C -0.049 4.049 19 C -0.047 4.047 20 O -0.540 6.540 21 Si 0.795 3.205 22 C -0.153 4.153 23 C -0.134 4.134 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.394 0.606 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.415 0.585 35 H 0.269 0.731 36 H 0.147 0.853 37 H 0.391 0.609 38 H -0.285 1.285 39 H -0.291 1.291 40 H 0.141 0.859 41 H 0.094 0.906 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 4.972 0.774 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.313 3.687 5 O -0.430 6.430 6 C -0.119 4.119 7 H 0.164 0.836 8 C -0.148 4.148 9 C 0.075 3.925 10 O -0.345 6.345 11 C -0.017 4.017 12 N -0.361 5.361 13 C 0.378 3.622 14 O -0.466 6.466 15 C -0.275 4.275 16 C 0.001 3.999 17 O -0.058 6.058 18 C -0.098 4.098 19 C -0.155 4.155 20 O -0.349 6.349 21 Si 0.697 3.303 22 C -0.173 4.173 23 C -0.172 4.172 24 H 0.113 0.887 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.245 0.755 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.254 0.746 35 H 0.284 0.716 36 H 0.165 0.835 37 H 0.241 0.759 38 H -0.211 1.211 39 H -0.218 1.218 40 H 0.159 0.841 41 H 0.113 0.887 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.539 4.475 0.512 9.654 hybrid contribution 1.334 -0.219 0.397 1.409 sum -7.205 4.256 0.909 8.418 Atomic orbital electron populations 1.21823 0.90588 1.04253 1.03821 1.23259 0.97010 0.79423 1.02401 1.86525 1.24238 1.33383 1.83377 1.24121 0.80547 0.93039 0.70951 1.90678 1.61200 1.44317 1.46849 1.22540 0.96747 0.89544 1.03110 0.83576 1.23079 0.93603 0.96892 1.01236 1.22097 0.93524 0.85549 0.91332 1.86604 1.96123 1.14689 1.37076 1.21870 0.99854 0.89256 0.90671 1.45439 1.36745 1.27659 1.26283 1.17503 0.80489 0.84007 0.80154 1.90816 1.35285 1.47043 1.73461 1.21395 1.04439 1.00380 1.01310 1.25398 0.97947 0.85836 0.90716 1.83726 1.44683 1.45528 1.31874 1.22653 0.92529 0.97723 0.96866 1.24717 0.88188 1.08964 0.93650 1.86655 1.24167 1.70676 1.53385 0.93463 0.86262 0.73251 0.77295 1.22553 1.01734 0.96924 0.96086 1.23698 0.98286 1.01099 0.94106 0.88656 0.91221 0.91068 0.91441 0.91586 0.88908 0.87992 0.75502 0.91403 0.90597 0.74604 0.71565 0.83550 0.75922 1.21123 1.21772 0.84091 0.88734 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 10.29 71.98 0.74 1.35 16 2 C 0.05 0.04 6.19 71.98 0.45 0.48 16 3 O -0.36 -1.00 10.22 -51.35 -0.52 -1.53 16 4 C 0.47 1.76 7.48 71.23 0.53 2.30 16 5 O -0.54 -5.68 15.66 21.94 0.34 -5.33 16 6 C -0.10 0.30 4.19 -11.01 -0.05 0.25 16 7 H 0.15 -0.82 8.14 -2.39 -0.02 -0.84 16 8 C -0.11 0.21 6.79 31.12 0.21 0.42 16 9 C 0.12 -0.72 1.49 -10.21 -0.02 -0.74 16 10 O -0.54 4.13 13.41 -148.98 -2.00 2.13 16 11 C 0.11 -0.29 5.33 86.38 0.46 0.17 16 12 N -0.71 4.02 5.33 -466.42 -2.48 1.53 16 13 C 0.59 2.15 7.81 86.65 0.68 2.83 16 14 O -0.59 -8.77 16.98 -4.07 -0.07 -8.84 16 15 C -0.27 0.01 6.31 -18.99 -0.12 -0.11 16 16 C 0.07 -0.64 11.61 67.39 0.78 0.15 16 17 O -0.16 0.80 8.89 4.44 0.04 0.84 16 18 C -0.05 0.05 6.20 24.76 0.15 0.20 16 19 C -0.05 0.12 2.98 71.24 0.21 0.33 16 20 O -0.54 -0.61 12.86 -148.98 -1.92 -2.53 16 21 Si 0.79 -3.58 32.08 68.60 2.20 -1.37 16 22 C -0.15 -0.57 10.88 23.65 0.26 -0.31 16 23 C -0.13 1.00 7.03 31.18 0.22 1.22 16 24 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 28 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 29 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.10 0.08 7.41 -2.39 -0.02 0.06 16 31 H 0.39 -6.34 7.30 -74.06 -0.54 -6.88 16 32 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.08 0.00 7.96 -2.38 -0.02 -0.02 16 34 H 0.42 -6.32 6.00 -92.71 -0.56 -6.88 16 35 H 0.27 -5.77 7.47 -2.91 -0.02 -5.80 16 36 H 0.15 -0.71 7.96 -2.39 -0.02 -0.73 16 37 H 0.39 -1.83 8.70 -74.06 -0.64 -2.48 16 38 H -0.29 -0.08 7.11 99.48 0.71 0.62 16 39 H -0.29 -0.68 7.11 99.48 0.71 0.03 16 40 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 41 H 0.09 -0.56 7.93 -2.39 -0.02 -0.58 16 42 H 0.12 -1.43 8.14 -2.39 -0.02 -1.45 16 Total: 0.00 -31.24 366.27 -0.52 -31.76 By element: Atomic # 1 Polarization: -24.58 SS G_CDS: -0.62 Total: -25.21 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 4.51 Total: 8.55 kcal Atomic # 7 Polarization: 4.02 SS G_CDS: -2.48 Total: 1.53 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -4.12 Total: -15.26 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.20 Total: -1.37 kcal Total: -31.24 -0.52 -31.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_13456056.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.410 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds