Wall clock time and date at job start Sun Mar 7 2021 07:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.08999 * 112.85047 * 311.20094 * 6 4 3 8 8 C 1.53784 * 113.61115 * 82.50661 * 6 4 3 9 9 C 1.53782 * 87.08188 * 139.98102 * 8 6 4 10 10 O 1.42899 * 113.61514 * 89.11114 * 9 8 6 11 11 C 1.53000 * 113.61464 * 220.01870 * 9 8 6 12 12 N 1.46491 * 109.47045 * 282.49635 * 11 9 8 13 13 C 1.34786 * 120.00070 * 180.02562 * 12 11 9 14 14 O 1.21690 * 119.99680 * 359.97438 * 13 12 11 15 15 C 1.46673 * 120.00032 * 180.02562 * 13 12 11 16 16 C 1.37874 * 126.23145 * 179.97438 * 15 13 12 17 17 C 1.50702 * 126.45703 * 359.93034 * 16 15 13 18 18 C 1.39835 * 107.08160 * 179.97438 * 16 15 13 19 19 C 1.35453 * 107.86845 * 0.02562 * 18 16 15 20 20 C 1.50699 * 125.56081 * 180.02562 * 19 18 16 21 21 O 1.42897 * 109.47582 * 64.99946 * 20 19 18 22 22 Si 1.86299 * 109.46781 * 184.99877 * 20 19 18 23 23 N 1.35531 * 108.87023 * 359.76494 * 19 18 16 24 24 C 1.53781 * 113.61278 * 179.97438 * 6 4 3 25 25 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 29 29 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 30 30 H 1.09000 * 113.61297 * 254.52804 * 8 6 4 31 31 H 1.09003 * 113.61710 * 25.43289 * 8 6 4 32 32 H 0.96703 * 113.99519 * 82.50415 * 10 9 8 33 33 H 1.09004 * 109.47139 * 42.49651 * 11 9 8 34 34 H 1.09000 * 109.46724 * 162.49084 * 11 9 8 35 35 H 0.96998 * 120.00581 * 359.97438 * 12 11 9 36 36 H 1.08997 * 109.47211 * 89.99786 * 17 16 15 37 37 H 1.09002 * 109.46609 * 209.99821 * 17 16 15 38 38 H 1.08999 * 109.47085 * 329.99428 * 17 16 15 39 39 H 1.08008 * 126.06302 * 179.97438 * 18 16 15 40 40 H 1.09000 * 109.47465 * 304.99555 * 20 19 18 41 41 H 0.96691 * 114.00204 * 179.97438 * 21 20 19 42 42 H 1.48503 * 110.00084 * 300.00037 * 22 20 19 43 43 H 1.48499 * 110.00367 * 61.31667 * 22 20 19 44 44 H 0.97000 * 125.67761 * 180.27023 * 23 19 18 45 45 H 1.08999 * 113.61835 * 334.57399 * 24 6 4 46 46 H 1.09005 * 113.61003 * 105.47345 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4715 3.5810 -0.7564 8 6 3.9857 3.5776 1.3967 9 6 5.3561 4.1430 0.9876 10 8 5.2815 5.4202 0.3512 11 6 6.3977 4.0953 2.1072 12 7 6.1448 5.1823 3.0562 13 6 6.9429 5.3379 4.1311 14 8 7.8733 4.5750 4.3136 15 6 6.6893 6.4259 5.0815 16 6 7.4195 6.7020 6.2179 17 6 8.6232 5.9436 6.7152 18 6 6.8322 7.8176 6.8226 19 6 5.7765 8.1949 6.0623 20 6 4.8608 9.3569 6.3489 21 8 5.5985 10.5776 6.2618 22 14 3.4759 9.3781 5.1030 23 7 5.6818 7.3602 4.9987 24 6 5.4582 2.9680 0.0013 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.2286 4.3443 1.5612 31 1 4.0375 2.8515 2.2080 32 1 5.2171 6.1632 0.9668 33 1 6.3313 3.1383 2.6249 34 1 7.3945 4.2094 1.6812 35 1 5.4034 5.7905 2.9106 36 1 9.5277 6.3786 6.2901 37 1 8.6670 6.0044 7.8026 38 1 8.5452 4.8994 6.4125 39 1 7.1613 8.2936 7.7346 40 1 4.4458 9.2539 7.3515 41 1 5.0709 11.3692 6.4347 42 1 4.0284 9.5181 3.7317 43 1 2.6816 8.1275 5.2051 44 1 5.0144 7.4118 4.2967 45 1 5.9124 2.0752 0.4312 46 1 5.8903 3.2424 -0.9611 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_13940406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:58 Heat of formation + Delta-G solvation = -129.057265 kcal Electronic energy + Delta-G solvation = -29624.616339 eV Core-core repulsion = 25289.817459 eV Total energy + Delta-G solvation = -4334.798880 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.78228 -42.19031 -40.90632 -39.96468 -37.83924 -37.63878 -36.17824 -35.65597 -33.79692 -32.73749 -31.87505 -29.82814 -28.44826 -27.27745 -26.98493 -25.87157 -23.86280 -22.62229 -22.08086 -21.64725 -20.89259 -20.71631 -19.92353 -18.91327 -18.46269 -17.92972 -17.83310 -17.46769 -17.21841 -16.92471 -16.50659 -16.24451 -15.89977 -15.51525 -15.26389 -15.16940 -15.04945 -14.89710 -14.49398 -14.29071 -14.22334 -14.07516 -13.84831 -13.72876 -13.60839 -13.52468 -13.35574 -13.10137 -13.04087 -12.88285 -12.62708 -12.46940 -12.38339 -12.09261 -11.86115 -11.63316 -11.57596 -11.27509 -11.04898 -10.53177 -10.37738 -9.94872 -9.31990 -5.08119 0.11198 0.97301 1.15389 1.38969 1.52174 1.61145 1.68530 1.78267 1.81450 2.09102 2.71366 3.00017 3.23451 3.31940 3.35406 3.37925 3.60916 3.80893 3.83149 3.90807 3.98121 4.02007 4.09489 4.13850 4.20413 4.25888 4.43573 4.48004 4.51489 4.57984 4.62091 4.70161 4.74447 4.76915 4.80290 4.81180 4.83732 4.96321 5.01150 5.06734 5.07416 5.26610 5.35555 5.50095 5.72436 6.04351 6.19737 6.43241 6.56822 6.85320 6.89142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.360 6.360 4 C 0.470 3.530 5 O -0.537 6.537 6 C -0.099 4.099 7 H 0.145 0.855 8 C -0.138 4.138 9 C 0.110 3.890 10 O -0.537 6.537 11 C 0.108 3.892 12 N -0.719 5.719 13 C 0.592 3.408 14 O -0.553 6.553 15 C -0.070 4.070 16 C -0.086 4.086 17 C -0.089 4.089 18 C -0.186 4.186 19 C 0.060 3.940 20 C -0.061 4.061 21 O -0.562 6.562 22 Si 0.773 3.227 23 N -0.533 5.533 24 C -0.105 4.105 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.389 0.611 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.404 0.596 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.157 0.843 40 H 0.110 0.890 41 H 0.408 0.592 42 H -0.280 1.280 43 H -0.274 1.274 44 H 0.417 0.583 45 H 0.107 0.893 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.160 6.611 1.579 11.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.427 6.427 6 C -0.118 4.118 7 H 0.163 0.837 8 C -0.176 4.176 9 C 0.068 3.932 10 O -0.344 6.344 11 C -0.015 4.015 12 N -0.373 5.373 13 C 0.381 3.619 14 O -0.431 6.431 15 C -0.182 4.182 16 C -0.095 4.095 17 C -0.146 4.146 18 C -0.210 4.210 19 C -0.057 4.057 20 C -0.171 4.171 21 O -0.373 6.373 22 Si 0.675 3.325 23 N -0.135 5.135 24 C -0.143 4.143 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.240 0.760 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.240 0.760 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.174 0.826 40 H 0.128 0.872 41 H 0.260 0.740 42 H -0.206 1.206 43 H -0.200 1.200 44 H 0.258 0.742 45 H 0.125 0.875 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.263 4.554 0.175 9.437 hybrid contribution -0.013 -0.058 0.294 0.300 sum -8.276 4.496 0.469 9.430 Atomic orbital electron populations 1.21825 0.90595 1.04310 1.03770 1.23273 0.97011 0.79319 1.02500 1.86525 1.24197 1.33530 1.83372 1.24021 0.80596 0.92889 0.71058 1.90674 1.61151 1.44158 1.46708 1.22510 0.96974 0.89799 1.02533 0.83703 1.23667 0.98225 1.01163 0.94550 1.22156 0.93512 0.85450 0.92047 1.86591 1.96220 1.14665 1.36967 1.21937 0.99715 0.90840 0.89028 1.45599 1.32956 1.33680 1.25029 1.17067 0.81818 0.82738 0.80296 1.90840 1.31502 1.45579 1.75185 1.20072 0.97473 0.98353 1.02320 1.20309 0.97973 0.97241 0.93936 1.20345 0.93599 0.99369 1.01304 1.20836 0.97798 0.98975 1.03435 1.20140 1.00604 0.95293 0.89667 1.24388 0.99065 0.82944 1.10690 1.86460 1.40753 1.15468 1.94571 0.93202 0.77741 0.86152 0.75403 1.41987 1.25470 1.24487 1.21505 1.23055 0.93395 0.96701 1.01110 0.88532 0.91197 0.91208 0.91416 0.91400 0.87228 0.88532 0.76048 0.89971 0.90650 0.76041 0.91423 0.90187 0.91689 0.82564 0.87246 0.73992 1.20636 1.20031 0.74244 0.87516 0.88635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.52 10.29 71.98 0.74 1.26 16 2 C 0.05 0.07 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.36 10.22 -51.42 -0.53 -1.88 16 4 C 0.47 2.21 7.48 71.24 0.53 2.75 16 5 O -0.54 -5.90 15.65 21.97 0.34 -5.55 16 6 C -0.10 0.14 4.20 -11.01 -0.05 0.09 16 7 H 0.15 -0.56 8.14 -2.39 -0.02 -0.58 16 8 C -0.14 0.66 7.01 31.12 0.22 0.88 16 9 C 0.11 -0.39 1.42 -10.28 -0.01 -0.41 16 10 O -0.54 2.12 13.41 -148.98 -2.00 0.12 16 11 C 0.11 -0.06 5.26 86.38 0.45 0.40 16 12 N -0.72 0.83 5.31 -467.09 -2.48 -1.65 16 13 C 0.59 4.06 7.79 86.44 0.67 4.73 16 14 O -0.55 -7.90 14.80 -4.32 -0.06 -7.96 16 15 C -0.07 -0.42 7.06 40.35 0.28 -0.14 16 16 C -0.09 -0.66 6.21 -19.56 -0.12 -0.79 16 17 C -0.09 -0.63 9.83 71.24 0.70 0.07 16 18 C -0.19 -0.91 10.66 22.01 0.23 -0.68 16 19 C 0.06 0.10 6.13 41.34 0.25 0.36 16 20 C -0.06 0.33 2.98 71.24 0.21 0.55 16 21 O -0.56 2.42 12.86 -148.98 -1.92 0.50 16 22 Si 0.77 -7.25 30.98 68.60 2.13 -5.12 16 23 N -0.53 -0.42 5.47 -171.93 -0.94 -1.36 16 24 C -0.10 0.08 6.79 31.11 0.21 0.29 16 25 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.07 0.13 8.13 -2.39 -0.02 0.11 16 29 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 30 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 31 H 0.10 -0.35 7.99 -2.39 -0.02 -0.37 16 32 H 0.39 -4.04 7.60 -74.06 -0.56 -4.60 16 33 H 0.08 0.10 8.05 -2.38 -0.02 0.08 16 34 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 35 H 0.40 -3.08 6.46 -92.71 -0.60 -3.67 16 36 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.06 0.68 6.49 -2.39 -0.02 0.66 16 39 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 40 H 0.11 -1.04 7.96 -2.39 -0.02 -1.06 16 41 H 0.41 -6.16 8.74 -74.06 -0.65 -6.80 16 42 H -0.28 1.17 7.11 99.48 0.71 1.87 16 43 H -0.27 1.44 7.11 99.48 0.71 2.15 16 44 H 0.42 -1.96 6.00 -92.71 -0.56 -2.52 16 45 H 0.11 0.14 7.39 -2.39 -0.02 0.12 16 46 H 0.10 -0.07 8.14 -2.38 -0.02 -0.09 16 Total: 0.00 -26.57 386.48 -1.96 -28.52 By element: Atomic # 1 Polarization: -14.21 SS G_CDS: -1.28 Total: -15.49 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.78 Total: 9.87 kcal Atomic # 7 Polarization: 0.42 SS G_CDS: -3.42 Total: -3.01 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -4.16 Total: -14.78 kcal Atomic # 14 Polarization: -7.25 SS G_CDS: 2.13 Total: -5.12 kcal Total: -26.57 -1.96 -28.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_13940406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.534 kcal (2) G-P(sol) polarization free energy of solvation -26.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds