Wall clock time and date at job start Sun Mar 7 2021 07:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.46927 * 2 1 4 4 C 1.34232 * 116.99613 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00076 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99729 * 180.02562 * 4 3 2 7 7 H 1.09001 * 112.84902 * 48.79877 * 6 4 3 8 8 C 1.53777 * 113.61580 * 179.97438 * 6 4 3 9 9 C 1.53782 * 87.08305 * 140.06360 * 8 6 4 10 10 O 1.42894 * 113.61234 * 89.20098 * 9 8 6 11 11 C 1.52997 * 113.61959 * 220.02449 * 9 8 6 12 12 N 1.46499 * 109.47555 * 180.02562 * 11 9 8 13 13 C 1.34777 * 120.00199 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 11 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 11 16 16 C 1.52996 * 109.47159 * 179.72352 * 15 13 12 17 17 C 1.52994 * 109.47118 * 179.97438 * 16 15 13 18 18 O 1.42906 * 109.47097 * 179.97438 * 17 16 15 19 19 C 1.35897 * 117.00053 * 179.97438 * 18 17 16 20 20 C 1.38712 * 120.05476 * 180.02562 * 19 18 17 21 21 C 1.38168 * 119.94288 * 180.02562 * 20 19 18 22 22 C 1.50698 * 119.97233 * 180.02562 * 21 20 19 23 23 O 1.42897 * 109.47222 * 299.99946 * 22 21 20 24 24 Si 1.86299 * 109.47236 * 179.97438 * 22 21 20 25 25 C 1.38244 * 120.05718 * 0.02562 * 21 20 19 26 26 C 1.38289 * 120.11180 * 0.02562 * 25 21 20 27 27 C 1.38125 * 120.05250 * 359.68373 * 26 25 21 28 28 C 1.53782 * 113.69173 * 277.53365 * 6 4 3 29 29 H 1.09002 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47690 * 300.00410 * 1 2 3 31 31 H 1.09005 * 109.47262 * 59.99926 * 1 2 3 32 32 H 1.08999 * 109.47035 * 240.00244 * 2 1 3 33 33 H 1.09001 * 109.46931 * 119.99699 * 2 1 3 34 34 H 1.09004 * 113.61098 * 25.52026 * 8 6 4 35 35 H 1.08994 * 113.61910 * 254.61201 * 8 6 4 36 36 H 0.96702 * 114.00515 * 181.53155 * 10 9 8 37 37 H 1.08998 * 109.47382 * 59.99749 * 11 9 8 38 38 H 1.09002 * 109.47216 * 300.00186 * 11 9 8 39 39 H 0.97000 * 119.99484 * 359.97438 * 12 11 9 40 40 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 41 41 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 42 42 H 1.09004 * 109.47066 * 299.99797 * 16 15 13 43 43 H 1.09000 * 109.47234 * 59.99288 * 16 15 13 44 44 H 1.08998 * 109.46965 * 299.99512 * 17 16 15 45 45 H 1.09003 * 109.47184 * 60.00331 * 17 16 15 46 46 H 1.07992 * 120.03114 * 359.97438 * 20 19 18 47 47 H 1.09008 * 109.46939 * 60.00038 * 22 21 20 48 48 H 0.96695 * 114.00202 * 300.00156 * 23 22 21 49 49 H 1.48503 * 110.00189 * 180.02562 * 24 22 21 50 50 H 1.48505 * 109.99908 * 301.32111 * 24 22 21 51 51 H 1.08001 * 119.94574 * 180.02562 * 25 21 20 52 52 H 1.07996 * 119.97737 * 179.97438 * 26 25 21 53 53 H 1.08009 * 120.02847 * 180.31874 * 27 26 25 54 54 H 1.08991 * 113.61684 * 105.45677 * 28 6 4 55 55 H 1.09007 * 113.60776 * 334.55411 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4714 3.5810 0.7564 8 6 5.4582 2.9681 -0.0001 9 6 5.3563 4.1444 -0.9855 10 8 5.2835 5.4209 -0.3475 11 6 6.3982 4.0982 -2.1049 12 7 6.2201 5.2550 -2.9859 13 6 7.0311 5.4237 -4.0491 14 8 7.9087 4.6179 -4.2761 15 6 6.8518 6.6170 -4.9518 16 6 7.8969 6.5734 -6.0684 17 6 7.7144 7.7846 -6.9852 18 8 8.6910 7.7442 -8.0278 19 6 8.6665 8.7553 -8.9355 20 6 9.5855 8.7786 -9.9743 21 6 9.5589 9.8080 -10.8956 22 6 10.5566 9.8337 -12.0247 23 8 11.8806 9.8832 -11.4894 24 14 10.2576 11.3371 -13.0835 25 6 8.6178 10.8143 -10.7825 26 6 7.7012 10.7938 -9.7472 27 6 7.7198 9.7638 -8.8271 28 6 3.9856 3.5798 -1.3957 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.9126 2.0759 -0.4308 35 1 5.8895 3.2414 0.9628 36 1 5.1957 6.1630 -0.9612 37 1 6.2736 3.1806 -2.6798 38 1 7.3982 4.1225 -1.6717 39 1 5.5180 5.8992 -2.8045 40 1 5.8530 6.5958 -5.3880 41 1 6.9762 7.5322 -4.3732 42 1 8.8956 6.5946 -5.6322 43 1 7.7725 5.6581 -6.6470 44 1 6.7157 7.7629 -7.4214 45 1 7.8386 8.7001 -6.4069 46 1 10.3217 7.9934 -10.0624 47 1 10.4429 8.9346 -12.6305 48 1 12.0533 10.6587 -10.9383 49 1 11.2347 11.3738 -14.2011 50 1 8.8732 11.3130 -13.6205 51 1 8.5983 11.6178 -11.5039 52 1 6.9672 11.5813 -9.6607 53 1 7.0005 9.7455 -8.0216 54 1 3.2285 4.3466 -1.5591 55 1 4.0374 2.8547 -2.2080 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_4549616.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:05:41 Heat of formation + Delta-G solvation = -194.732568 kcal Electronic energy + Delta-G solvation = -35036.331760 eV Core-core repulsion = 30006.127326 eV Total energy + Delta-G solvation = -5030.204434 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.15895 -41.29775 -41.02528 -40.13422 -39.16841 -37.79424 -37.29599 -36.03325 -35.35475 -34.90149 -32.69874 -32.43543 -31.31905 -30.06199 -28.11786 -27.02187 -26.83764 -26.03904 -23.90656 -23.67249 -23.28904 -21.95269 -21.85430 -21.49690 -20.79378 -19.31789 -18.98110 -18.51984 -17.84721 -17.79175 -17.57454 -17.48552 -17.38997 -17.18144 -16.88748 -16.70755 -16.50899 -16.16902 -16.10139 -15.46694 -15.37212 -15.09592 -14.94744 -14.84928 -14.70477 -14.35367 -14.21144 -14.16596 -14.12381 -13.82453 -13.53891 -13.36006 -13.26941 -13.20125 -13.03630 -12.99596 -12.76467 -12.72956 -12.58593 -12.30490 -12.29844 -12.23765 -11.96825 -11.76190 -11.60699 -11.60030 -11.58024 -11.49179 -11.04099 -10.90207 -10.50390 -10.24335 -9.90103 -9.23170 -4.98727 0.22896 0.42047 1.02110 1.30146 1.57450 1.58590 1.65070 1.87138 1.97627 2.33551 2.69955 2.84255 3.09142 3.35605 3.41609 3.46626 3.50967 3.64144 3.68304 3.86220 3.89336 3.89543 3.93682 3.98581 4.01252 4.12577 4.19487 4.21903 4.26279 4.28746 4.30886 4.36272 4.41751 4.44069 4.53325 4.56240 4.62783 4.65833 4.66947 4.71521 4.79068 4.85676 4.86637 4.88776 4.99954 5.01990 5.09277 5.11544 5.15751 5.27193 5.31196 5.39432 5.39999 5.46717 5.76249 6.40483 6.44810 6.61210 6.65369 6.74743 7.18871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.540 6.540 6 C -0.101 4.101 7 H 0.146 0.854 8 C -0.111 4.111 9 C 0.117 3.883 10 O -0.538 6.538 11 C 0.106 3.894 12 N -0.715 5.715 13 C 0.510 3.490 14 O -0.589 6.589 15 C -0.126 4.126 16 C -0.104 4.104 17 C 0.058 3.942 18 O -0.341 6.341 19 C 0.117 3.883 20 C -0.154 4.154 21 C -0.085 4.085 22 C -0.085 4.085 23 O -0.558 6.558 24 Si 0.793 3.207 25 C -0.161 4.161 26 C -0.072 4.072 27 C -0.205 4.205 28 C -0.134 4.134 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.395 0.605 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.418 0.582 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.113 0.887 47 H 0.101 0.899 48 H 0.395 0.605 49 H -0.301 1.301 50 H -0.281 1.281 51 H 0.148 0.852 52 H 0.160 0.840 53 H 0.155 0.845 54 H 0.115 0.885 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.249 9.341 2.533 13.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.313 3.687 5 O -0.430 6.430 6 C -0.120 4.120 7 H 0.163 0.837 8 C -0.149 4.149 9 C 0.075 3.925 10 O -0.346 6.346 11 C -0.018 4.018 12 N -0.370 5.370 13 C 0.298 3.702 14 O -0.469 6.469 15 C -0.165 4.165 16 C -0.142 4.142 17 C -0.017 4.017 18 O -0.255 6.255 19 C 0.071 3.929 20 C -0.173 4.173 21 C -0.085 4.085 22 C -0.193 4.193 23 O -0.366 6.366 24 Si 0.698 3.302 25 C -0.179 4.179 26 C -0.090 4.090 27 C -0.223 4.223 28 C -0.172 4.172 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.246 0.754 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.256 0.744 40 H 0.149 0.851 41 H 0.151 0.849 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.105 0.895 46 H 0.131 0.869 47 H 0.119 0.881 48 H 0.245 0.755 49 H -0.229 1.229 50 H -0.207 1.207 51 H 0.165 0.835 52 H 0.178 0.822 53 H 0.173 0.827 54 H 0.133 0.867 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.432 7.660 1.843 11.540 hybrid contribution -0.078 -1.094 -0.142 1.105 sum -8.510 6.567 1.702 10.883 Atomic orbital electron populations 1.21824 0.90577 1.04262 1.03818 1.23259 0.97017 0.79398 1.02407 1.86528 1.24232 1.33420 1.83377 1.24112 0.80554 0.93027 0.70964 1.90673 1.61200 1.44288 1.46835 1.22539 0.96812 0.89619 1.03014 0.83668 1.23077 0.93464 0.97060 1.01254 1.22046 0.93391 0.85357 0.91695 1.86592 1.95997 1.14792 1.37230 1.21787 0.99404 0.89906 0.90751 1.45721 1.36196 1.27581 1.27539 1.21249 0.80223 0.87459 0.81253 1.90764 1.35323 1.47449 1.73359 1.21545 1.02269 0.96962 0.95716 1.21171 1.00005 0.97299 0.95757 1.23007 0.91513 0.99792 0.87358 1.86057 1.55993 1.45138 1.38335 1.19195 0.95432 0.88370 0.89868 1.20317 1.00470 1.00901 0.95603 1.20205 0.97308 0.94587 0.96420 1.25397 0.83165 1.11893 0.98893 1.86469 1.27920 1.51287 1.70912 0.93515 0.76524 0.82142 0.77975 1.21192 0.96967 0.99085 1.00607 1.21321 0.97671 0.97616 0.92349 1.21613 1.01086 0.95962 1.03681 1.23657 0.98420 1.01084 0.94009 0.88631 0.91204 0.91099 0.91460 0.91549 0.88074 0.88951 0.75394 0.91107 0.91767 0.74388 0.85058 0.84856 0.92262 0.92425 0.89796 0.89541 0.86858 0.88145 0.75463 1.22930 1.20741 0.83493 0.82217 0.82703 0.86694 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.31 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.16 10.22 -51.43 -0.53 -1.69 16 4 C 0.47 1.98 7.49 71.23 0.53 2.52 16 5 O -0.54 -5.88 15.65 21.97 0.34 -5.53 16 6 C -0.10 0.24 4.19 -11.02 -0.05 0.20 16 7 H 0.15 -0.72 8.14 -2.39 -0.02 -0.74 16 8 C -0.11 0.16 6.80 31.12 0.21 0.37 16 9 C 0.12 -0.67 1.48 -10.26 -0.02 -0.69 16 10 O -0.54 3.82 13.40 -148.98 -2.00 1.83 16 11 C 0.11 -0.30 5.32 86.38 0.46 0.16 16 12 N -0.72 5.27 5.35 -463.06 -2.48 2.80 16 13 C 0.51 -0.55 7.83 87.66 0.69 0.14 16 14 O -0.59 -6.57 15.98 -3.04 -0.05 -6.62 16 15 C -0.13 1.15 5.70 29.85 0.17 1.32 16 16 C -0.10 0.14 4.87 30.59 0.15 0.29 16 17 C 0.06 -0.21 4.74 71.98 0.34 0.13 16 18 O -0.34 -1.86 10.14 -92.39 -0.94 -2.80 16 19 C 0.12 0.50 6.69 22.51 0.15 0.66 16 20 C -0.15 -0.97 9.55 22.37 0.21 -0.76 16 21 C -0.08 -0.20 5.39 -19.88 -0.11 -0.31 16 22 C -0.08 -0.15 2.82 71.24 0.20 0.05 16 23 O -0.56 -1.67 12.77 -148.98 -1.90 -3.57 16 24 Si 0.79 -1.56 29.79 68.60 2.04 0.48 16 25 C -0.16 0.28 8.67 22.28 0.19 0.47 16 26 C -0.07 0.25 10.04 22.26 0.22 0.48 16 27 C -0.20 0.34 9.04 22.37 0.20 0.54 16 28 C -0.13 0.91 7.02 31.13 0.22 1.13 16 29 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.07 -0.30 8.14 -2.38 -0.02 -0.32 16 32 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 33 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 34 H 0.10 0.14 7.40 -2.39 -0.02 0.12 16 35 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.39 -6.08 7.33 -74.06 -0.54 -6.63 16 37 H 0.07 0.01 7.94 -2.39 -0.02 0.00 16 38 H 0.06 0.08 8.14 -2.39 -0.02 0.07 16 39 H 0.42 -6.65 7.03 -92.71 -0.65 -7.30 16 40 H 0.13 -1.98 8.14 -2.38 -0.02 -2.00 16 41 H 0.13 -2.04 8.14 -2.39 -0.02 -2.06 16 42 H 0.06 0.21 8.10 -2.38 -0.02 0.19 16 43 H 0.06 0.22 8.10 -2.39 -0.02 0.20 16 44 H 0.08 -0.65 7.65 -2.39 -0.02 -0.67 16 45 H 0.09 -0.70 7.67 -2.39 -0.02 -0.72 16 46 H 0.11 1.03 8.06 -2.91 -0.02 1.01 16 47 H 0.10 0.38 7.96 -2.38 -0.02 0.36 16 48 H 0.40 -2.19 8.70 -74.06 -0.64 -2.84 16 49 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 50 H -0.28 -0.51 7.11 99.48 0.71 0.20 16 51 H 0.15 -0.92 4.87 -2.91 -0.01 -0.94 16 52 H 0.16 -1.54 8.06 -2.91 -0.02 -1.56 16 53 H 0.16 -1.18 6.30 -2.91 -0.02 -1.19 16 54 H 0.11 -1.28 8.14 -2.39 -0.02 -1.30 16 55 H 0.09 -0.49 7.92 -2.38 -0.02 -0.50 16 Total: 0.00 -33.70 454.26 -1.40 -35.10 By element: Atomic # 1 Polarization: -27.63 SS G_CDS: -0.87 Total: -28.50 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 4.97 Total: 8.50 kcal Atomic # 7 Polarization: 5.27 SS G_CDS: -2.48 Total: 2.80 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -5.07 Total: -18.38 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: 2.04 Total: 0.48 kcal Total: -33.70 -1.40 -35.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_4549616.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.632 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds