Wall clock time and date at job start Sun Mar 7 2021 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47075 * 2 1 4 4 C 1.34230 * 116.99614 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00179 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99717 * 179.97438 * 4 3 2 7 7 H 1.08999 * 112.85047 * 311.20094 * 6 4 3 8 8 C 1.53784 * 113.61115 * 82.50661 * 6 4 3 9 9 C 1.53782 * 87.08188 * 139.98102 * 8 6 4 10 10 O 1.42895 * 113.69388 * 89.12446 * 9 8 6 11 11 C 1.53000 * 113.61464 * 220.01870 * 9 8 6 12 12 N 1.46491 * 109.47045 * 282.49635 * 11 9 8 13 13 C 1.34786 * 120.00070 * 180.02562 * 12 11 9 14 14 O 1.21277 * 119.99662 * 359.97438 * 13 12 11 15 15 C 1.50694 * 120.00150 * 179.97438 * 13 12 11 16 16 O 1.42898 * 109.47211 * 179.97438 * 15 13 12 17 17 C 1.35995 * 117.00070 * 179.97438 * 16 15 13 18 18 C 1.39154 * 120.07107 * 179.72406 * 17 16 15 19 19 O 1.35989 * 120.07450 * 0.02562 * 18 17 16 20 20 C 1.42899 * 117.00231 * 179.97438 * 19 18 17 21 21 C 1.38568 * 119.85167 * 179.74675 * 18 17 16 22 22 C 1.38243 * 119.99903 * 0.53737 * 21 18 17 23 23 C 1.50696 * 119.92969 * 179.74222 * 22 21 18 24 24 O 1.42898 * 109.47168 * 254.97880 * 23 22 21 25 25 Si 1.86303 * 109.46818 * 14.97684 * 23 22 21 26 26 C 1.38253 * 120.14587 * 359.72004 * 22 21 18 27 27 N 1.48003 * 119.92789 * 180.02562 * 26 22 21 28 28 O 1.21798 * 120.00477 * 180.02562 * 27 26 22 29 29 O 1.21799 * 120.00117 * 0.02562 * 27 26 22 30 30 C 1.38241 * 120.14813 * 0.02562 * 26 22 21 31 31 C 1.53781 * 113.61278 * 179.97438 * 6 4 3 32 32 H 1.09002 * 109.47153 * 300.00058 * 1 2 3 33 33 H 1.08998 * 109.47533 * 59.99688 * 1 2 3 34 34 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.47153 * 239.99942 * 2 1 3 36 36 H 1.09001 * 109.46832 * 120.00132 * 2 1 3 37 37 H 1.09000 * 113.61297 * 254.52804 * 8 6 4 38 38 H 1.09003 * 113.61710 * 25.43289 * 8 6 4 39 39 H 0.96703 * 113.99699 * 82.46335 * 10 9 8 40 40 H 1.09004 * 109.47139 * 42.49651 * 11 9 8 41 41 H 1.09008 * 109.46876 * 162.49367 * 11 9 8 42 42 H 0.96998 * 120.00581 * 359.97438 * 12 11 9 43 43 H 1.09004 * 109.47150 * 299.99887 * 15 13 12 44 44 H 1.09002 * 109.47021 * 59.99826 * 15 13 12 45 45 H 1.08995 * 109.47609 * 179.97438 * 20 19 18 46 46 H 1.09004 * 109.47168 * 299.99610 * 20 19 18 47 47 H 1.09004 * 109.47228 * 59.99615 * 20 19 18 48 48 H 1.08001 * 120.00006 * 180.25180 * 21 18 17 49 49 H 1.08998 * 109.47295 * 134.97150 * 23 22 21 50 50 H 0.96708 * 113.99906 * 180.02562 * 24 23 22 51 51 H 1.48503 * 109.99892 * 178.68008 * 25 23 22 52 52 H 1.48504 * 109.99942 * 299.99895 * 25 23 22 53 53 H 1.07999 * 120.00444 * 180.02562 * 30 26 22 54 54 H 1.08999 * 113.61835 * 334.57399 * 31 6 4 55 55 H 1.09005 * 113.61003 * 105.47345 * 31 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4715 3.5810 -0.7564 8 6 3.9857 3.5776 1.3967 9 6 5.3561 4.1430 0.9876 10 8 5.2835 5.4203 0.3513 11 6 6.3977 4.0953 2.1072 12 7 6.1448 5.1823 3.0562 13 6 6.9429 5.3379 4.1311 14 8 7.8702 4.5776 4.3129 15 6 6.6831 6.4564 5.1069 16 8 7.6559 6.4118 6.1527 17 6 7.5632 7.3602 7.1230 18 6 8.4742 7.3728 8.1749 19 8 9.4593 6.4373 8.2345 20 6 10.3587 6.5119 9.3425 21 6 8.3788 8.3444 9.1582 22 6 7.3735 9.2915 9.0989 23 6 7.2677 10.3439 10.1723 24 8 6.1777 10.0300 11.0414 25 14 8.8506 10.3912 11.1537 26 6 6.4653 9.2757 8.0567 27 7 5.3913 10.2923 7.9977 28 8 4.5901 10.2793 7.0804 29 8 5.3086 11.1420 8.8664 30 6 6.5580 8.3123 7.0696 31 6 5.4582 2.9680 0.0013 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3635 -1.0276 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 3.2286 4.3443 1.5612 38 1 4.0375 2.8515 2.2080 39 1 5.2191 6.1633 0.9669 40 1 6.3313 3.1383 2.6249 41 1 7.3946 4.2094 1.6812 42 1 5.4034 5.7905 2.9106 43 1 6.7495 7.4132 4.5890 44 1 5.6864 6.3424 5.5332 45 1 11.0930 5.7098 9.2691 46 1 10.8696 7.4747 9.3316 47 1 9.7993 6.4079 10.2723 48 1 9.0870 8.3590 9.9735 49 1 7.0967 11.3169 9.7117 50 1 6.0499 10.6668 11.7579 51 1 8.7712 11.4468 12.1952 52 1 9.0953 9.0704 11.7869 53 1 5.8475 8.3023 6.2563 54 1 5.9124 2.0752 0.4312 55 1 5.8903 3.2424 -0.9611 There are 82 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 82 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_4549636.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:06:05 Heat of formation + Delta-G solvation = -199.874764 kcal Electronic energy + Delta-G solvation = -43732.586372 eV Core-core repulsion = 37707.997947 eV Total energy + Delta-G solvation = -6024.588425 eV No. of doubly occupied orbitals = 82 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 441.174 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.38884 -42.20124 -42.06568 -41.13881 -40.33192 -39.53474 -39.10298 -37.79535 -37.74613 -37.23884 -36.02000 -35.45040 -32.79044 -32.69980 -32.59172 -30.88482 -29.08259 -28.59713 -27.91142 -26.99591 -26.26632 -25.62828 -23.98159 -23.68896 -23.08586 -21.98045 -21.91060 -20.78792 -20.72882 -19.92400 -19.46552 -19.22546 -18.90773 -18.70644 -18.36339 -18.16795 -17.89341 -17.80132 -17.75904 -17.38869 -17.29641 -16.91958 -16.76864 -16.45867 -16.23961 -15.92465 -15.85887 -15.60996 -15.26850 -15.08867 -14.82273 -14.73265 -14.52204 -14.30009 -14.16536 -14.01599 -13.85792 -13.79125 -13.52575 -13.50442 -13.27691 -12.99409 -12.92863 -12.79622 -12.67254 -12.58176 -12.57531 -12.40070 -12.37039 -12.31043 -12.28365 -12.17585 -11.91183 -11.77081 -11.59454 -11.49065 -11.12572 -10.92160 -10.47705 -10.40996 -10.35657 -9.49267 -5.01531 -1.32462 -0.43290 0.19095 0.31495 1.03033 1.13824 1.18781 1.35720 1.51773 1.61010 1.83436 1.87056 1.90847 2.26991 2.85412 2.90578 3.09046 3.15037 3.29822 3.33765 3.41112 3.44387 3.47049 3.57067 3.61532 3.86898 3.89103 3.94025 3.94163 3.96637 4.01554 4.04600 4.13037 4.19272 4.19898 4.29109 4.29528 4.30892 4.37465 4.57553 4.61006 4.63094 4.68293 4.70950 4.75670 4.78968 4.85660 4.86839 4.90141 5.09299 5.11524 5.13603 5.28418 5.40250 5.56433 6.02821 6.27458 6.51036 6.52968 6.62082 6.65338 7.01194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.469 3.531 5 O -0.540 6.540 6 C -0.102 4.102 7 H 0.145 0.855 8 C -0.136 4.136 9 C 0.117 3.883 10 O -0.538 6.538 11 C 0.108 3.892 12 N -0.707 5.707 13 C 0.519 3.481 14 O -0.565 6.565 15 C 0.025 3.975 16 O -0.291 6.291 17 C 0.103 3.897 18 C 0.167 3.833 19 O -0.306 6.306 20 C 0.000 4.000 21 C -0.174 4.174 22 C 0.003 3.997 23 C -0.104 4.104 24 O -0.546 6.546 25 Si 0.767 3.233 26 C -0.045 4.045 27 N 0.038 4.962 28 O -0.186 6.186 29 O -0.161 6.161 30 C -0.107 4.107 31 C -0.109 4.109 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.395 0.605 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.421 0.579 43 H 0.136 0.864 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.182 0.818 49 H 0.102 0.898 50 H 0.400 0.600 51 H -0.277 1.277 52 H -0.270 1.270 53 H 0.190 0.810 54 H 0.103 0.897 55 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 3.343 0.516 3.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.313 3.687 5 O -0.429 6.429 6 C -0.121 4.121 7 H 0.163 0.837 8 C -0.174 4.174 9 C 0.075 3.925 10 O -0.347 6.347 11 C -0.016 4.016 12 N -0.364 5.364 13 C 0.305 3.695 14 O -0.442 6.442 15 C -0.052 4.052 16 O -0.204 6.204 17 C 0.056 3.944 18 C 0.118 3.882 19 O -0.218 6.218 20 C -0.093 4.093 21 C -0.192 4.192 22 C 0.001 3.999 23 C -0.211 4.211 24 O -0.357 6.357 25 Si 0.668 3.332 26 C -0.129 4.129 27 N 0.552 4.448 28 O -0.396 6.396 29 O -0.376 6.376 30 C -0.127 4.127 31 C -0.147 4.147 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.247 0.753 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.259 0.741 43 H 0.154 0.846 44 H 0.148 0.852 45 H 0.143 0.857 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.198 0.802 49 H 0.120 0.880 50 H 0.252 0.748 51 H -0.204 1.204 52 H -0.197 1.197 53 H 0.207 0.793 54 H 0.121 0.879 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.206 0.721 0.330 2.344 hybrid contribution -1.856 0.777 1.049 2.269 sum 0.350 1.498 1.379 2.066 Atomic orbital electron populations 1.21823 0.90647 1.04258 1.03788 1.23254 0.96973 0.79411 1.02426 1.86529 1.24300 1.33413 1.83381 1.24119 0.80529 0.93045 0.70963 1.90672 1.61172 1.44272 1.46831 1.22549 0.96923 0.89601 1.03004 0.83740 1.23662 0.98458 1.01165 0.94072 1.22037 0.93341 0.85435 0.91695 1.86596 1.96185 1.14653 1.37217 1.21870 0.99515 0.91021 0.89151 1.45470 1.33245 1.33510 1.24134 1.20321 0.81880 0.85273 0.82053 1.90808 1.31805 1.46443 1.75151 1.22952 0.94001 1.00082 0.88174 1.86300 1.52502 1.48202 1.33399 1.17894 0.95005 0.91246 0.90281 1.18658 0.88477 0.89220 0.91850 1.86315 1.38994 1.47943 1.48519 1.23730 0.92396 1.06296 0.86925 1.21153 1.01908 0.94937 1.01234 1.19100 0.92120 0.95570 0.93110 1.25379 1.02085 0.98481 0.95193 1.86476 1.50195 1.54560 1.44470 0.94378 0.79021 0.78371 0.81383 1.20546 0.94159 0.95971 1.02246 1.43547 1.01011 1.00940 0.99267 1.94507 1.37319 1.80028 1.27710 1.94489 1.78466 1.31949 1.32729 1.20921 0.99128 0.92406 1.00216 1.23072 0.93366 0.97029 1.01251 0.91156 0.91228 0.88618 0.91519 0.91429 0.86719 0.88679 0.75336 0.90593 0.90997 0.74067 0.84648 0.85234 0.85735 0.89193 0.91222 0.80177 0.87997 0.74835 1.20354 1.19660 0.79313 0.87870 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.54 10.29 71.98 0.74 1.28 16 2 C 0.05 0.06 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.19 10.22 -51.42 -0.53 -1.71 16 4 C 0.47 1.88 7.48 71.24 0.53 2.42 16 5 O -0.54 -5.66 15.65 21.97 0.34 -5.31 16 6 C -0.10 0.27 4.20 -11.01 -0.05 0.23 16 7 H 0.14 -0.72 8.14 -2.39 -0.02 -0.74 16 8 C -0.14 0.98 7.02 31.12 0.22 1.20 16 9 C 0.12 -0.76 1.41 -10.28 -0.01 -0.77 16 10 O -0.54 3.99 13.42 -148.98 -2.00 1.99 16 11 C 0.11 -0.45 5.26 86.38 0.45 0.00 16 12 N -0.71 5.74 5.32 -463.06 -2.46 3.28 16 13 C 0.52 -0.36 7.91 87.65 0.69 0.33 16 14 O -0.56 -6.52 16.50 16.02 0.26 -6.26 16 15 C 0.03 -0.16 5.22 71.23 0.37 0.21 16 16 O -0.29 -0.78 9.45 -67.08 -0.63 -1.41 16 17 C 0.10 0.08 6.70 22.57 0.15 0.24 16 18 C 0.17 0.15 6.70 22.57 0.15 0.30 16 19 O -0.31 -0.57 10.28 -79.56 -0.82 -1.38 16 20 C 0.00 0.00 9.81 113.37 1.11 1.11 16 21 C -0.17 0.32 7.65 22.35 0.17 0.49 16 22 C 0.00 0.00 5.29 -19.86 -0.11 -0.10 16 23 C -0.10 0.05 1.73 71.23 0.12 0.17 16 24 O -0.55 -1.39 11.77 -129.64 -1.53 -2.91 16 25 Si 0.77 -4.20 30.19 68.60 2.07 -2.13 16 26 C -0.04 -0.14 6.85 36.38 0.25 0.10 16 27 N 0.04 0.29 4.45 -46.46 -0.21 0.09 16 28 O -0.19 -1.57 18.44 18.89 0.35 -1.22 16 29 O -0.16 -1.51 14.62 25.10 0.37 -1.15 16 30 C -0.11 0.12 8.54 22.35 0.19 0.32 16 31 C -0.11 0.24 6.79 31.11 0.21 0.45 16 32 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 36 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 37 H 0.11 -1.30 8.14 -2.39 -0.02 -1.31 16 38 H 0.09 -0.56 7.99 -2.39 -0.02 -0.58 16 39 H 0.40 -6.10 7.60 -74.06 -0.56 -6.66 16 40 H 0.08 -0.10 8.05 -2.38 -0.02 -0.12 16 41 H 0.07 -0.05 8.14 -2.38 -0.02 -0.07 16 42 H 0.42 -6.98 7.33 -92.71 -0.68 -7.66 16 43 H 0.14 -1.81 7.66 -2.38 -0.02 -1.83 16 44 H 0.13 -1.60 7.67 -2.39 -0.02 -1.62 16 45 H 0.12 -1.13 8.14 -2.39 -0.02 -1.14 16 46 H 0.09 -1.02 7.65 -2.38 -0.02 -1.04 16 47 H 0.07 -0.56 7.67 -2.38 -0.02 -0.58 16 48 H 0.18 -1.16 3.13 -2.91 -0.01 -1.17 16 49 H 0.10 -0.06 6.07 -2.39 -0.01 -0.08 16 50 H 0.40 -1.98 8.74 -74.05 -0.65 -2.62 16 51 H -0.28 0.23 7.11 99.48 0.71 0.94 16 52 H -0.27 0.65 6.74 99.48 0.67 1.33 16 53 H 0.19 -1.33 5.85 -2.91 -0.02 -1.35 16 54 H 0.10 0.03 7.39 -2.39 -0.02 0.02 16 55 H 0.09 -0.17 8.14 -2.38 -0.02 -0.19 16 Total: 0.00 -37.14 463.41 0.00 -37.15 By element: Atomic # 1 Polarization: -26.62 SS G_CDS: -0.88 Total: -27.49 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 5.65 Total: 8.48 kcal Atomic # 7 Polarization: 6.03 SS G_CDS: -2.67 Total: 3.36 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -4.18 Total: -19.37 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.07 Total: -2.13 kcal Total: -37.14 0.00 -37.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_4549636.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.729 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds