Wall clock time and date at job start Sun Mar 7 2021 07:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45202 * 109.46867 * 2 1 4 4 C 1.34232 * 116.99450 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00145 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99784 * 179.97438 * 4 3 2 7 7 H 1.09001 * 112.85008 * 311.19784 * 6 4 3 8 8 C 1.53781 * 113.61423 * 82.50008 * 6 4 3 9 9 C 1.53787 * 87.07917 * 139.98055 * 8 6 4 10 10 O 1.42903 * 113.68623 * 89.12806 * 9 8 6 11 11 C 1.53001 * 113.61486 * 220.01760 * 9 8 6 12 12 N 1.46503 * 109.47142 * 282.50364 * 11 9 8 13 13 C 1.34776 * 119.99591 * 179.97438 * 12 11 9 14 14 O 1.21287 * 120.00259 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99840 * 179.97438 * 13 12 11 16 16 F 1.39899 * 109.47258 * 300.00638 * 15 13 12 17 17 F 1.39901 * 109.46735 * 60.00415 * 15 13 12 18 18 O 1.42903 * 109.47163 * 179.97438 * 15 13 12 19 19 C 1.35905 * 116.99723 * 180.02562 * 18 15 13 20 20 C 1.38730 * 120.05464 * 359.72940 * 19 18 15 21 21 C 1.38145 * 119.93603 * 179.74529 * 20 19 18 22 22 C 1.38259 * 120.06144 * 0.50896 * 21 20 19 23 23 C 1.50699 * 119.94781 * 179.74847 * 22 21 20 24 24 O 1.42902 * 109.47550 * 120.01601 * 23 22 21 25 25 Si 1.86302 * 109.47007 * 0.02562 * 23 22 21 26 26 C 1.38273 * 120.11073 * 359.76273 * 22 21 20 27 27 C 1.38143 * 120.05328 * 359.97438 * 26 22 21 28 28 C 1.53775 * 87.08173 * 334.56754 * 9 8 6 29 29 H 1.09001 * 109.46998 * 59.99993 * 1 2 3 30 30 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00397 * 1 2 3 32 32 H 1.09001 * 109.47002 * 119.99449 * 2 1 3 33 33 H 1.08993 * 109.46955 * 239.99886 * 2 1 3 34 34 H 1.08997 * 113.62041 * 254.52885 * 8 6 4 35 35 H 1.08999 * 113.61548 * 25.43850 * 8 6 4 36 36 H 0.96700 * 113.99912 * 82.46869 * 10 9 8 37 37 H 1.09005 * 109.46670 * 42.50021 * 11 9 8 38 38 H 1.09000 * 109.47185 * 162.49757 * 11 9 8 39 39 H 0.96999 * 120.00269 * 359.97438 * 12 11 9 40 40 H 1.07999 * 120.03045 * 359.97438 * 20 19 18 41 41 H 1.08007 * 119.96865 * 180.27149 * 21 20 19 42 42 H 1.08999 * 109.47163 * 240.02245 * 23 22 21 43 43 H 0.96699 * 114.00028 * 179.97438 * 24 23 22 44 44 H 1.48494 * 109.99978 * 298.68509 * 25 23 22 45 45 H 1.48501 * 110.00135 * 60.00305 * 25 23 22 46 46 H 1.07992 * 119.97202 * 179.97438 * 26 22 21 47 47 H 1.07993 * 120.02922 * 179.97438 * 27 26 22 48 48 H 1.08997 * 113.61870 * 270.88253 * 28 9 8 49 49 H 1.09003 * 113.61364 * 139.97480 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.4716 3.5810 -0.7564 8 6 3.9856 3.5778 1.3966 9 6 5.3561 4.1430 0.9875 10 8 5.2834 5.4204 0.3511 11 6 6.3977 4.0954 2.1072 12 7 6.1446 5.1825 3.0562 13 6 6.9421 5.3375 4.1316 14 8 7.8689 4.5767 4.3140 15 6 6.6821 6.4561 5.1074 16 9 6.7683 7.6841 4.4429 17 9 5.4025 6.3103 5.6538 18 8 7.6542 6.4108 6.1539 19 6 7.5608 7.3578 7.1241 20 6 6.5577 8.3144 7.0671 21 6 6.4617 9.2728 8.0574 22 6 7.3707 9.2855 9.0992 23 6 7.2671 10.3356 10.1751 24 8 7.0744 9.7025 11.4417 25 14 5.8217 11.4542 9.8140 26 6 8.3749 8.3366 9.1553 27 6 8.4718 7.3729 8.1703 28 6 5.4583 2.9681 0.0008 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.2286 4.3444 1.5611 35 1 4.0374 2.8517 2.2079 36 1 5.2190 6.1634 0.9667 37 1 6.3312 3.1384 2.6249 38 1 7.3945 4.2096 1.6813 39 1 5.4032 5.7908 2.9105 40 1 5.8501 8.3076 6.2511 41 1 5.6783 10.0151 8.0158 42 1 8.1846 10.9235 10.1986 43 1 6.9995 10.3196 12.1825 44 1 6.0247 12.1428 8.5142 45 1 4.5645 10.6645 9.7795 46 1 9.0839 8.3489 9.9698 47 1 9.2565 6.6322 8.2143 48 1 5.9126 2.0753 0.4304 49 1 5.8899 3.2426 -0.9618 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_4549640.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:06:17 Heat of formation + Delta-G solvation = -267.946001 kcal Electronic energy + Delta-G solvation = -38083.341049 eV Core-core repulsion = 32422.129129 eV Total energy + Delta-G solvation = -5661.211920 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.146 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -51.01480 -48.98326 -42.23035 -41.55915 -41.26891 -40.30416 -39.28230 -37.81289 -37.31387 -36.27392 -35.69747 -32.71804 -32.65117 -32.23621 -30.69284 -28.64219 -27.06022 -26.59487 -25.94428 -24.61246 -23.80932 -22.80584 -22.44142 -22.05372 -20.86610 -20.78719 -20.28427 -19.81797 -18.90565 -18.42532 -18.28443 -17.89215 -17.76395 -17.49632 -17.41957 -17.07669 -16.84035 -16.52828 -16.33674 -16.19067 -16.01139 -15.83321 -15.52080 -15.40027 -15.28206 -15.22380 -15.01011 -14.85596 -14.59446 -14.54589 -14.43175 -14.30687 -13.99534 -13.84456 -13.73158 -13.57372 -13.34664 -13.25181 -13.01468 -12.86749 -12.60226 -12.57884 -12.34335 -12.26787 -12.00035 -11.93489 -11.68632 -11.60525 -11.46036 -11.04365 -10.73674 -10.37153 -10.32675 -9.67181 -4.95990 -0.11958 -0.00999 0.30582 0.50297 1.01343 1.28728 1.52682 1.59176 1.62631 1.85682 1.95204 2.30740 2.58360 2.76760 3.04089 3.10423 3.24347 3.27347 3.36434 3.39301 3.41290 3.51947 3.82227 3.83045 3.92811 3.93084 4.00196 4.09344 4.13492 4.19688 4.25464 4.28117 4.44642 4.45757 4.53654 4.58621 4.64113 4.67281 4.76815 4.77859 4.84119 4.85210 4.86253 4.87827 5.06003 5.09928 5.20770 5.25185 5.38916 5.60490 5.69874 6.25248 6.54064 6.60438 6.91363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.469 3.531 5 O -0.538 6.538 6 C -0.101 4.101 7 H 0.145 0.855 8 C -0.141 4.141 9 C 0.113 3.887 10 O -0.537 6.537 11 C 0.103 3.897 12 N -0.684 5.684 13 C 0.521 3.479 14 O -0.501 6.501 15 C 0.433 3.567 16 F -0.170 7.170 17 F -0.172 7.172 18 O -0.302 6.302 19 C 0.086 3.914 20 C -0.192 4.192 21 C -0.100 4.100 22 C -0.109 4.109 23 C -0.074 4.074 24 O -0.563 6.563 25 Si 0.770 3.230 26 C -0.054 4.054 27 C -0.130 4.130 28 C -0.104 4.104 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.393 0.607 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.422 0.578 40 H 0.141 0.859 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.405 0.595 44 H -0.287 1.287 45 H -0.298 1.298 46 H 0.161 0.839 47 H 0.154 0.846 48 H 0.109 0.891 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.781 5.708 1.786 7.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.314 3.686 5 O -0.427 6.427 6 C -0.120 4.120 7 H 0.162 0.838 8 C -0.178 4.178 9 C 0.071 3.929 10 O -0.345 6.345 11 C -0.020 4.020 12 N -0.340 5.340 13 C 0.299 3.701 14 O -0.374 6.374 15 C 0.355 3.645 16 F -0.151 7.151 17 F -0.153 7.153 18 O -0.218 6.218 19 C 0.043 3.957 20 C -0.210 4.210 21 C -0.118 4.118 22 C -0.109 4.109 23 C -0.184 4.184 24 O -0.373 6.373 25 Si 0.676 3.324 26 C -0.072 4.072 27 C -0.148 4.148 28 C -0.142 4.142 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.117 0.883 36 H 0.244 0.756 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.261 0.739 40 H 0.158 0.842 41 H 0.145 0.855 42 H 0.120 0.880 43 H 0.257 0.743 44 H -0.214 1.214 45 H -0.226 1.226 46 H 0.179 0.821 47 H 0.172 0.828 48 H 0.127 0.873 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.413 4.006 0.445 5.282 hybrid contribution -0.372 0.006 -0.067 0.378 sum -3.785 4.013 0.378 5.529 Atomic orbital electron populations 1.21829 0.90715 1.04267 1.03744 1.23259 0.96935 0.79369 1.02486 1.86530 1.24337 1.33463 1.83379 1.24066 0.80539 0.92979 0.71025 1.90674 1.61121 1.44191 1.46748 1.22524 0.97103 0.89684 1.02716 0.83775 1.23711 0.98328 1.01284 0.94501 1.22134 0.93303 0.85712 0.91791 1.86608 1.96165 1.14624 1.37100 1.22263 1.00763 0.90269 0.88676 1.45540 1.31915 1.33659 1.22844 1.19259 0.84135 0.84278 0.82431 1.90885 1.29878 1.43179 1.73448 1.21810 0.75775 0.82846 0.84068 1.93201 1.95531 1.45799 1.80586 1.93203 1.40131 1.95514 1.86467 1.86644 1.50477 1.51374 1.33347 1.19169 0.97396 0.89321 0.89768 1.21506 1.00041 0.97132 1.02355 1.20829 0.98246 0.98118 0.94597 1.19807 0.96346 0.98769 0.96013 1.24740 1.10926 0.97779 0.84978 1.86436 1.96134 1.38542 1.16211 0.94380 0.74305 0.80303 0.83363 1.21146 0.97282 0.91614 0.97123 1.20822 0.99642 1.01667 0.92709 1.23072 0.93280 0.96679 1.01153 0.91255 0.88583 0.91220 0.91367 0.91440 0.87034 0.88267 0.75589 0.88744 0.89164 0.73926 0.84154 0.85511 0.88040 0.74341 1.21407 1.22625 0.82105 0.82805 0.87289 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.54 10.29 71.98 0.74 1.28 16 2 C 0.05 0.05 6.19 71.98 0.45 0.49 16 3 O -0.36 -1.12 10.22 -51.44 -0.53 -1.65 16 4 C 0.47 1.65 7.48 71.24 0.53 2.18 16 5 O -0.54 -5.20 15.65 21.97 0.34 -4.86 16 6 C -0.10 0.31 4.20 -11.01 -0.05 0.27 16 7 H 0.14 -0.75 8.14 -2.39 -0.02 -0.77 16 8 C -0.14 0.98 7.02 31.12 0.22 1.20 16 9 C 0.11 -0.74 1.41 -10.27 -0.01 -0.76 16 10 O -0.54 3.61 13.42 -148.98 -2.00 1.61 16 11 C 0.10 -0.50 5.26 86.38 0.45 -0.04 16 12 N -0.68 3.48 5.32 -463.04 -2.46 1.02 16 13 C 0.52 1.66 7.34 87.66 0.64 2.30 16 14 O -0.50 -5.42 16.50 15.99 0.26 -5.16 16 15 C 0.43 1.78 2.05 71.24 0.15 1.93 16 16 F -0.17 -0.37 15.28 44.97 0.69 0.31 16 17 F -0.17 -0.49 15.31 44.97 0.69 0.20 16 18 O -0.30 -2.76 9.60 -73.44 -0.71 -3.46 16 19 C 0.09 0.71 6.48 22.51 0.15 0.85 16 20 C -0.19 -1.35 8.26 22.37 0.18 -1.16 16 21 C -0.10 -0.63 8.66 22.25 0.19 -0.44 16 22 C -0.11 -0.48 5.42 -19.85 -0.11 -0.59 16 23 C -0.07 0.13 2.81 71.24 0.20 0.33 16 24 O -0.56 0.95 12.74 -148.98 -1.90 -0.95 16 25 Si 0.77 -2.09 29.78 68.60 2.04 -0.04 16 26 C -0.05 -0.19 9.60 22.26 0.21 0.03 16 27 C -0.13 -0.71 9.99 22.37 0.22 -0.48 16 28 C -0.10 0.34 6.80 31.12 0.21 0.55 16 29 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 33 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 34 H 0.11 -1.14 8.14 -2.39 -0.02 -1.16 16 35 H 0.10 -0.62 7.99 -2.39 -0.02 -0.64 16 36 H 0.39 -5.28 7.60 -74.06 -0.56 -5.84 16 37 H 0.09 -0.36 8.05 -2.38 -0.02 -0.38 16 38 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 39 H 0.42 -4.81 7.33 -92.71 -0.68 -5.49 16 40 H 0.14 0.66 5.10 -2.91 -0.01 0.65 16 41 H 0.13 0.60 4.87 -2.91 -0.01 0.59 16 42 H 0.10 -0.65 7.96 -2.39 -0.02 -0.67 16 43 H 0.41 -4.95 8.74 -74.06 -0.65 -5.60 16 44 H -0.29 -0.72 7.11 99.48 0.71 -0.02 16 45 H -0.30 -1.55 7.11 99.48 0.71 -0.84 16 46 H 0.16 -0.17 8.06 -2.91 -0.02 -0.19 16 47 H 0.15 0.35 8.06 -2.91 -0.02 0.33 16 48 H 0.11 -0.17 7.39 -2.39 -0.02 -0.19 16 49 H 0.10 -0.30 8.14 -2.39 -0.02 -0.32 16 Total: 0.00 -26.95 421.71 0.02 -26.93 By element: Atomic # 1 Polarization: -21.09 SS G_CDS: -0.80 Total: -21.89 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 4.39 Total: 7.94 kcal Atomic # 7 Polarization: 3.48 SS G_CDS: -2.46 Total: 1.02 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -4.52 Total: -14.47 kcal Atomic # 9 Polarization: -0.86 SS G_CDS: 1.38 Total: 0.51 kcal Atomic # 14 Polarization: -2.09 SS G_CDS: 2.04 Total: -0.04 kcal Total: -26.95 0.02 -26.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_4549640.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.016 kcal (2) G-P(sol) polarization free energy of solvation -26.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds