Wall clock time and date at job start Sun Mar 7 2021 07:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.47243 * 2 1 4 4 C 1.34232 * 117.00056 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99811 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00080 * 179.97438 * 4 3 2 7 7 H 1.08996 * 112.90957 * 311.25986 * 6 4 3 8 8 C 1.53789 * 113.60818 * 82.50567 * 6 4 3 9 9 C 1.53785 * 87.07708 * 139.98000 * 8 6 4 10 10 O 1.42907 * 113.68735 * 89.12775 * 9 8 6 11 11 C 1.52992 * 113.61500 * 220.01565 * 9 8 6 12 12 N 1.46504 * 109.47283 * 282.50139 * 11 9 8 13 13 C 1.34773 * 119.99798 * 179.97438 * 12 11 9 14 14 O 1.21284 * 120.00454 * 0.02562 * 13 12 11 15 15 C 1.50702 * 120.00003 * 179.97438 * 13 12 11 16 16 O 1.42902 * 109.47512 * 180.02562 * 15 13 12 17 17 C 1.35899 * 116.99864 * 180.02562 * 16 15 13 18 18 C 1.38711 * 120.05043 * 180.02562 * 17 16 15 19 19 C 1.38165 * 119.94450 * 180.02562 * 18 17 16 20 20 C 1.50699 * 119.97727 * 179.72287 * 19 18 17 21 21 O 1.42906 * 109.46866 * 64.99854 * 20 19 18 22 22 Si 1.86299 * 109.47292 * 185.00015 * 20 19 18 23 23 C 1.38244 * 120.05319 * 359.97438 * 19 18 17 24 24 C 1.38287 * 120.11305 * 359.97438 * 23 19 18 25 25 C 1.38123 * 120.05390 * 0.02562 * 24 23 19 26 26 C 1.53776 * 113.61550 * 180.02562 * 6 4 3 27 27 H 1.09001 * 109.46946 * 59.99671 * 1 2 3 28 28 H 1.08993 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46932 * 299.99987 * 1 2 3 30 30 H 1.09000 * 109.47205 * 240.00449 * 2 1 3 31 31 H 1.08996 * 109.47377 * 120.00183 * 2 1 3 32 32 H 1.08998 * 113.61564 * 25.43665 * 8 6 4 33 33 H 1.09000 * 113.61477 * 254.52535 * 8 6 4 34 34 H 0.96703 * 113.99963 * 80.93390 * 10 9 8 35 35 H 1.09005 * 109.47188 * 162.49881 * 11 9 8 36 36 H 1.09001 * 109.47072 * 42.49930 * 11 9 8 37 37 H 0.96993 * 119.99850 * 359.97438 * 12 11 9 38 38 H 1.08997 * 109.47246 * 59.99484 * 15 13 12 39 39 H 1.09001 * 109.46817 * 300.00022 * 15 13 12 40 40 H 1.08000 * 120.03159 * 359.97438 * 18 17 16 41 41 H 1.08998 * 109.47126 * 305.00522 * 20 19 18 42 42 H 0.96700 * 113.99536 * 60.00321 * 21 20 19 43 43 H 1.48498 * 110.00037 * 58.68022 * 22 20 19 44 44 H 1.48506 * 109.99742 * 180.02562 * 22 20 19 45 45 H 1.08004 * 119.94705 * 179.97438 * 23 19 18 46 46 H 1.08001 * 119.97618 * 179.97438 * 24 23 19 47 47 H 1.08001 * 120.02758 * 179.97438 * 25 24 23 48 48 H 1.08997 * 113.61437 * 105.47677 * 26 6 4 49 49 H 1.09004 * 113.69363 * 334.57897 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.4715 3.5821 -0.7553 8 6 3.9857 3.5776 1.3968 9 6 5.3561 4.1428 0.9877 10 8 5.2835 5.4204 0.3514 11 6 6.3978 4.0952 2.1072 12 7 6.1448 5.1822 3.0562 13 6 6.9423 5.3371 4.1316 14 8 7.8697 4.5769 4.3135 15 6 6.6825 6.4556 5.1076 16 8 7.6554 6.4110 6.1533 17 6 7.5621 7.3581 7.1235 18 6 8.4741 7.3741 8.1685 19 6 8.3770 8.3376 9.1540 20 6 9.3636 8.3519 10.2930 21 8 10.6702 8.6343 9.7878 22 14 8.8754 9.6650 11.5211 23 6 7.3722 9.2855 9.0988 24 6 6.4624 9.2723 8.0575 25 6 6.5553 8.3111 7.0699 26 6 5.4582 2.9680 0.0001 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 4.0375 2.8514 2.2080 33 1 3.2286 4.3443 1.5613 34 1 5.1956 6.1616 0.9662 35 1 7.3946 4.2094 1.6812 36 1 6.3313 3.1382 2.6248 37 1 5.4034 5.7904 2.9106 38 1 5.6855 6.3422 5.5332 39 1 6.7498 7.4124 4.5898 40 1 9.2590 6.6336 8.2123 41 1 9.3664 7.3786 10.7835 42 1 10.7419 9.4871 9.3375 43 1 7.5057 9.4003 12.0301 44 1 9.8411 9.6896 12.6491 45 1 7.2976 10.0377 9.8703 46 1 5.6780 10.0136 8.0168 47 1 5.8442 8.3010 6.2570 48 1 5.8895 3.2428 -0.9625 49 1 5.9141 2.0756 0.4290 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:06:28 Heat of formation + Delta-G solvation = -180.311357 kcal Electronic energy + Delta-G solvation = -31869.233692 eV Core-core repulsion = 27150.729846 eV Total energy + Delta-G solvation = -4718.503845 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.165 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.17633 -41.56335 -40.87566 -40.11107 -38.93738 -37.78799 -37.23202 -36.02375 -35.46052 -32.70386 -32.47160 -31.84220 -30.46954 -28.58340 -27.02018 -26.82660 -26.04054 -23.81292 -23.66978 -22.65711 -21.96013 -21.67065 -20.79381 -19.36206 -19.21867 -18.68373 -17.94750 -17.79078 -17.54388 -17.39746 -17.37298 -17.24798 -16.98673 -16.48948 -16.29004 -16.11767 -15.89945 -15.46259 -15.17862 -15.01274 -14.83651 -14.67148 -14.48940 -14.22369 -14.18076 -14.01395 -13.81484 -13.53026 -13.47653 -13.26405 -12.99810 -12.92648 -12.78720 -12.60893 -12.58546 -12.29981 -12.13525 -12.01577 -11.78588 -11.67713 -11.59882 -11.49290 -11.09326 -10.93000 -10.49169 -10.36730 -9.92960 -9.28003 -4.99000 0.21468 0.39685 1.02407 1.26692 1.36900 1.40520 1.61376 1.65990 1.97639 2.51696 2.68127 2.84218 3.08411 3.31727 3.39852 3.43691 3.52104 3.56301 3.68610 3.85199 3.88620 3.93736 4.00776 4.01349 4.06675 4.14148 4.19102 4.25845 4.28812 4.29351 4.34759 4.49438 4.56507 4.61261 4.65055 4.67026 4.78565 4.84676 4.86732 4.88849 4.98492 5.08776 5.11231 5.13241 5.25111 5.37826 5.39743 5.45901 5.70121 6.20661 6.38970 6.61473 6.65121 6.74955 7.03058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.540 6.540 6 C -0.101 4.101 7 H 0.147 0.853 8 C -0.135 4.135 9 C 0.118 3.882 10 O -0.537 6.537 11 C 0.107 3.893 12 N -0.706 5.706 13 C 0.514 3.486 14 O -0.573 6.573 15 C 0.038 3.962 16 O -0.326 6.326 17 C 0.113 3.887 18 C -0.152 4.152 19 C -0.086 4.086 20 C -0.087 4.087 21 O -0.558 6.558 22 Si 0.796 3.204 23 C -0.156 4.156 24 C -0.070 4.070 25 C -0.200 4.200 26 C -0.111 4.111 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.396 0.604 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.421 0.579 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.396 0.604 43 H -0.281 1.281 44 H -0.302 1.302 45 H 0.151 0.849 46 H 0.165 0.835 47 H 0.165 0.835 48 H 0.093 0.907 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 9.122 -1.914 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.313 3.687 5 O -0.430 6.430 6 C -0.120 4.120 7 H 0.164 0.836 8 C -0.172 4.172 9 C 0.076 3.924 10 O -0.346 6.346 11 C -0.017 4.017 12 N -0.362 5.362 13 C 0.300 3.700 14 O -0.451 6.451 15 C -0.039 4.039 16 O -0.239 6.239 17 C 0.068 3.932 18 C -0.171 4.171 19 C -0.086 4.086 20 C -0.196 4.196 21 O -0.367 6.367 22 Si 0.701 3.299 23 C -0.173 4.173 24 C -0.087 4.087 25 C -0.219 4.219 26 C -0.149 4.149 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.247 0.753 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.260 0.740 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.246 0.754 43 H -0.207 1.207 44 H -0.231 1.231 45 H 0.168 0.832 46 H 0.183 0.817 47 H 0.182 0.818 48 H 0.111 0.889 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.864 7.332 -1.293 11.576 hybrid contribution 0.038 -1.033 0.076 1.036 sum -8.826 6.299 -1.218 10.911 Atomic orbital electron populations 1.21821 0.90574 1.04260 1.03823 1.23257 0.97021 0.79415 1.02398 1.86526 1.24245 1.33397 1.83380 1.24121 0.80546 0.93045 0.70960 1.90675 1.61208 1.44309 1.46837 1.22542 0.96767 0.89611 1.03046 0.83574 1.23657 0.98347 1.01190 0.94035 1.22039 0.93343 0.85452 0.91592 1.86599 1.95974 1.14752 1.37261 1.21858 0.99498 0.91040 0.89275 1.45448 1.33268 1.33445 1.24037 1.20612 0.81723 0.85466 0.82182 1.90795 1.32137 1.46806 1.75378 1.22751 0.94052 0.99134 0.88014 1.86124 1.53011 1.50562 1.34217 1.19181 0.95832 0.89379 0.88761 1.20299 1.00308 1.01551 0.94968 1.20199 0.97193 0.95243 0.95988 1.25441 0.84536 1.09141 1.00449 1.86484 1.27713 1.44305 1.78164 0.93559 0.75901 0.84660 0.75764 1.21221 0.96010 0.99399 1.00699 1.21365 0.98121 0.97395 0.91861 1.21653 0.99947 0.96909 1.03368 1.23080 0.93515 0.97017 1.01242 0.91191 0.88648 0.91094 0.91565 0.91475 0.88784 0.86443 0.75304 0.91341 0.90832 0.73991 0.85375 0.85076 0.87371 0.88402 0.75437 1.20724 1.23062 0.83181 0.81727 0.81806 0.88882 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.60 10.29 71.98 0.74 1.34 16 2 C 0.05 0.04 6.19 71.98 0.45 0.49 16 3 O -0.36 -1.04 10.22 -51.44 -0.53 -1.57 16 4 C 0.47 1.80 7.48 71.23 0.53 2.34 16 5 O -0.54 -5.74 15.65 21.97 0.34 -5.39 16 6 C -0.10 0.30 4.20 -11.01 -0.05 0.25 16 7 H 0.15 -0.82 8.14 -2.39 -0.02 -0.84 16 8 C -0.13 1.03 7.02 31.12 0.22 1.24 16 9 C 0.12 -0.76 1.41 -10.26 -0.01 -0.77 16 10 O -0.54 4.16 13.41 -148.98 -2.00 2.17 16 11 C 0.11 -0.35 5.26 86.38 0.45 0.10 16 12 N -0.71 5.26 5.33 -463.06 -2.47 2.80 16 13 C 0.51 0.48 7.91 87.66 0.69 1.17 16 14 O -0.57 -8.14 16.50 15.99 0.26 -7.88 16 15 C 0.04 -0.20 5.22 71.24 0.37 0.18 16 16 O -0.33 -1.92 9.67 -73.37 -0.71 -2.63 16 17 C 0.11 0.37 6.69 22.50 0.15 0.53 16 18 C -0.15 -0.96 9.62 22.37 0.22 -0.75 16 19 C -0.09 -0.16 5.35 -19.88 -0.11 -0.26 16 20 C -0.09 -0.15 2.80 71.24 0.20 0.05 16 21 O -0.56 -1.79 12.83 -148.98 -1.91 -3.70 16 22 Si 0.80 -1.83 29.80 68.60 2.04 0.21 16 23 C -0.16 0.51 8.66 22.28 0.19 0.70 16 24 C -0.07 0.41 10.04 22.25 0.22 0.63 16 25 C -0.20 0.88 9.04 22.36 0.20 1.08 16 26 C -0.11 0.21 6.80 31.13 0.21 0.43 16 27 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 31 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 32 H 0.09 -0.56 7.99 -2.39 -0.02 -0.58 16 33 H 0.12 -1.45 8.14 -2.39 -0.02 -1.47 16 34 H 0.40 -6.38 7.62 -74.05 -0.56 -6.94 16 35 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 36 H 0.07 -0.01 8.05 -2.39 -0.02 -0.03 16 37 H 0.42 -7.07 7.32 -92.71 -0.68 -7.75 16 38 H 0.13 -1.55 7.66 -2.39 -0.02 -1.56 16 39 H 0.13 -1.64 7.66 -2.39 -0.02 -1.66 16 40 H 0.11 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.10 0.41 7.96 -2.39 -0.02 0.39 16 42 H 0.40 -2.23 8.70 -74.06 -0.64 -2.88 16 43 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 44 H -0.30 -1.69 7.11 99.48 0.71 -0.99 16 45 H 0.15 -1.23 4.90 -2.91 -0.01 -1.24 16 46 H 0.17 -2.04 8.06 -2.91 -0.02 -2.06 16 47 H 0.16 -1.99 6.30 -2.91 -0.02 -2.00 16 48 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 49 H 0.10 0.09 7.40 -2.39 -0.02 0.07 16 Total: 0.00 -35.58 412.54 -1.12 -36.70 By element: Atomic # 1 Polarization: -28.60 SS G_CDS: -0.84 Total: -29.44 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 4.69 Total: 8.74 kcal Atomic # 7 Polarization: 5.26 SS G_CDS: -2.47 Total: 2.80 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -4.54 Total: -19.00 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: 2.04 Total: 0.21 kcal Total: -35.58 -1.12 -36.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.613 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds