Wall clock time and date at job start Sun Mar 7 2021 07:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.47334 * 2 1 4 4 C 1.34232 * 116.99945 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00133 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99939 * 180.02562 * 4 3 2 7 7 H 1.08997 * 112.85150 * 48.80498 * 6 4 3 8 8 C 1.53782 * 113.61567 * 180.02562 * 6 4 3 9 9 C 1.53792 * 87.08038 * 140.06435 * 8 6 4 10 10 O 1.42899 * 113.60918 * 89.20245 * 9 8 6 11 11 C 1.52999 * 113.61157 * 220.01618 * 9 8 6 12 12 N 1.46500 * 109.46957 * 178.47052 * 11 9 8 13 13 C 1.34772 * 120.00302 * 180.02562 * 12 11 9 14 14 O 1.21696 * 119.99631 * 0.02562 * 13 12 11 15 15 C 1.46681 * 120.00085 * 180.02562 * 13 12 11 16 16 C 1.37875 * 126.23236 * 180.02562 * 15 13 12 17 17 C 1.39833 * 107.08615 * 179.74025 * 16 15 13 18 18 C 1.35454 * 107.86387 * 359.97438 * 17 16 15 19 19 C 1.50702 * 125.56530 * 180.02562 * 18 17 16 20 20 O 1.42900 * 109.47465 * 244.97975 * 19 18 17 21 21 Si 1.86304 * 109.46728 * 4.97857 * 19 18 17 22 22 N 1.35535 * 108.87121 * 0.02562 * 18 17 16 23 23 C 1.53778 * 87.17139 * 334.61098 * 9 8 6 24 24 H 1.09009 * 109.46769 * 60.00111 * 1 2 3 25 25 H 1.08993 * 109.47235 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47410 * 300.00482 * 1 2 3 27 27 H 1.09002 * 109.47579 * 239.99842 * 2 1 3 28 28 H 1.09004 * 109.47182 * 120.00017 * 2 1 3 29 29 H 1.09003 * 113.61464 * 25.52148 * 8 6 4 30 30 H 1.08995 * 113.69358 * 254.62159 * 8 6 4 31 31 H 0.96698 * 113.99709 * 181.52784 * 10 9 8 32 32 H 1.09004 * 109.46990 * 58.48047 * 11 9 8 33 33 H 1.08996 * 109.47376 * 298.47058 * 11 9 8 34 34 H 0.97008 * 119.99736 * 0.02562 * 12 11 9 35 35 H 1.07997 * 126.45730 * 359.75831 * 16 15 13 36 36 H 1.07992 * 126.06953 * 179.97438 * 17 16 15 37 37 H 1.08997 * 109.47062 * 124.97754 * 19 18 17 38 38 H 0.96695 * 114.00007 * 179.97438 * 20 19 18 39 39 H 1.48497 * 110.00105 * 299.99563 * 21 19 18 40 40 H 1.48499 * 110.00186 * 61.32149 * 21 19 18 41 41 H 0.97004 * 125.67280 * 180.02562 * 22 18 17 42 42 H 1.08998 * 113.61085 * 139.93780 * 23 9 8 43 43 H 1.08996 * 113.61656 * 270.83913 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 1 3.4710 3.5811 0.7570 8 6 5.4583 2.9679 0.0011 9 6 5.3565 4.1443 -0.9843 10 8 5.2837 5.4208 -0.3461 11 6 6.3986 4.0981 -2.1035 12 7 6.1970 5.2347 -3.0056 13 6 7.0039 5.3998 -4.0724 14 8 7.8997 4.6044 -4.2865 15 6 6.8024 6.5381 -4.9752 16 6 7.5472 6.8293 -6.0984 17 6 7.0086 7.9918 -6.6585 18 6 5.9670 8.3816 -5.8853 19 6 5.1003 9.5906 -6.1267 20 8 5.2784 10.5251 -5.0604 21 14 5.5836 10.3889 -7.7392 22 7 5.8313 7.5067 -4.8590 23 6 3.9855 3.5820 -1.3954 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.9128 2.0757 -0.4297 30 1 5.8910 3.2408 0.9635 31 1 5.1960 6.1628 -0.9599 32 1 6.2914 3.1680 -2.6617 33 1 7.3981 4.1498 -1.6718 34 1 5.4827 5.8685 -2.8351 35 1 8.3880 6.2656 -6.4747 36 1 7.3606 8.4904 -7.5494 37 1 4.0550 9.2852 -6.1714 38 1 4.7500 11.3298 -5.1503 39 1 7.0068 10.8099 -7.6911 40 1 5.3727 9.4380 -8.8601 41 1 5.1610 7.5549 -4.1595 42 1 3.2296 4.3502 -1.5581 43 1 4.0365 2.8580 -2.2086 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_6580494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:07:04 Heat of formation + Delta-G solvation = -129.949773 kcal Electronic energy + Delta-G solvation = -27308.651921 eV Core-core repulsion = 23129.351959 eV Total energy + Delta-G solvation = -4179.299963 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.68917 -42.14366 -40.88565 -39.95112 -37.81155 -37.61542 -36.13241 -35.54948 -32.72665 -32.46102 -31.75505 -29.80353 -27.25526 -26.96201 -25.93260 -23.89972 -23.16127 -22.05719 -21.69571 -21.39796 -20.84107 -20.08831 -18.88496 -18.44387 -17.91496 -17.81008 -17.43281 -17.26425 -16.84316 -16.59927 -16.18605 -15.75835 -15.55603 -15.30446 -15.12603 -14.97909 -14.83656 -14.43207 -14.39354 -14.21118 -13.91168 -13.80414 -13.57147 -13.54528 -13.32547 -13.01413 -12.83139 -12.69846 -12.60326 -12.34873 -12.04496 -11.85157 -11.61467 -11.59519 -11.39570 -11.00539 -10.51394 -10.42808 -10.25434 -9.41975 -4.92496 0.14223 1.00365 1.19923 1.34709 1.55038 1.74323 1.75774 1.99105 2.10827 2.11496 2.76933 3.04370 3.27375 3.32698 3.36582 3.40370 3.66795 3.83402 3.85352 3.92762 4.00223 4.02416 4.14437 4.16001 4.24495 4.27888 4.40557 4.52738 4.55978 4.61905 4.74488 4.77628 4.80291 4.84607 4.85870 4.86838 5.00366 5.06122 5.09746 5.38173 5.41193 5.56988 6.09933 6.31300 6.51998 6.59777 6.86576 6.87407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.470 3.530 5 O -0.539 6.539 6 C -0.100 4.100 7 H 0.146 0.854 8 C -0.107 4.107 9 C 0.114 3.886 10 O -0.536 6.536 11 C 0.107 3.893 12 N -0.712 5.712 13 C 0.595 3.405 14 O -0.566 6.566 15 C -0.058 4.058 16 C -0.118 4.118 17 C -0.231 4.231 18 C 0.072 3.928 19 C -0.059 4.059 20 O -0.564 6.564 21 Si 0.806 3.194 22 N -0.503 5.503 23 C -0.136 4.136 24 H 0.070 0.930 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.391 0.609 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.409 0.591 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.110 0.890 38 H 0.410 0.590 39 H -0.302 1.302 40 H -0.292 1.292 41 H 0.434 0.566 42 H 0.114 0.886 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 7.164 -0.370 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.429 6.429 6 C -0.119 4.119 7 H 0.164 0.836 8 C -0.145 4.145 9 C 0.072 3.928 10 O -0.344 6.344 11 C -0.017 4.017 12 N -0.365 5.365 13 C 0.383 3.617 14 O -0.444 6.444 15 C -0.172 4.172 16 C -0.145 4.145 17 C -0.255 4.255 18 C -0.048 4.048 19 C -0.169 4.169 20 O -0.375 6.375 21 Si 0.712 3.288 22 N -0.101 5.101 23 C -0.173 4.173 24 H 0.089 0.911 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.113 0.887 31 H 0.242 0.758 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.246 0.754 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.263 0.737 39 H -0.230 1.230 40 H -0.219 1.219 41 H 0.275 0.725 42 H 0.132 0.868 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.476 5.395 -0.270 10.051 hybrid contribution -0.090 -0.482 0.163 0.517 sum -8.566 4.913 -0.107 9.876 Atomic orbital electron populations 1.21824 0.90593 1.04279 1.03796 1.23266 0.97009 0.79372 1.02452 1.86525 1.24218 1.33457 1.83376 1.24060 0.80570 0.92954 0.71012 1.90676 1.61178 1.44231 1.46768 1.22545 0.96839 0.89700 1.02793 0.83645 1.23066 0.93479 0.96804 1.01165 1.22117 0.93437 0.85486 0.91796 1.86604 1.96008 1.14756 1.37056 1.21949 1.00001 0.89647 0.90106 1.45516 1.34725 1.29718 1.26562 1.17061 0.81279 0.83231 0.80139 1.90873 1.34022 1.45450 1.74081 1.20195 0.98637 0.95977 1.02415 1.21423 1.00568 0.97654 0.94843 1.20738 1.00079 1.00809 1.03914 1.20451 0.99440 0.93979 0.90892 1.24567 1.01209 0.88498 1.02590 1.86428 1.71665 1.33467 1.45918 0.94253 0.79998 0.83247 0.71335 1.41803 1.25977 1.19494 1.22824 1.23699 0.98193 1.01154 0.94304 0.91142 0.88599 0.91203 0.91427 0.91495 0.87714 0.88746 0.75818 0.90110 0.90907 0.75387 0.83694 0.84090 0.87220 0.73702 1.22969 1.21896 0.72545 0.86800 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.31 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.17 10.22 -51.43 -0.53 -1.69 16 4 C 0.47 1.96 7.49 71.23 0.53 2.50 16 5 O -0.54 -5.76 15.65 21.96 0.34 -5.42 16 6 C -0.10 0.23 4.19 -10.95 -0.05 0.18 16 7 H 0.15 -0.70 8.14 -2.39 -0.02 -0.72 16 8 C -0.11 0.15 6.80 31.12 0.21 0.36 16 9 C 0.11 -0.55 1.46 -10.27 -0.01 -0.57 16 10 O -0.54 3.07 13.40 -148.98 -2.00 1.07 16 11 C 0.11 -0.16 5.30 86.38 0.46 0.30 16 12 N -0.71 2.24 5.34 -467.08 -2.49 -0.26 16 13 C 0.59 3.43 7.79 86.45 0.67 4.10 16 14 O -0.57 -8.53 16.88 -4.34 -0.07 -8.61 16 15 C -0.06 -0.26 7.06 40.35 0.28 0.03 16 16 C -0.12 -0.93 10.65 22.57 0.24 -0.69 16 17 C -0.23 -1.29 9.32 22.01 0.21 -1.08 16 18 C 0.07 0.05 6.50 41.34 0.27 0.32 16 19 C -0.06 0.38 3.07 71.24 0.22 0.60 16 20 O -0.56 3.86 12.86 -148.98 -1.92 1.95 16 21 Si 0.81 -4.59 30.56 68.60 2.10 -2.50 16 22 N -0.50 1.04 5.99 -171.93 -1.03 0.01 16 23 C -0.14 0.85 7.03 31.18 0.22 1.07 16 24 H 0.07 -0.29 8.14 -2.38 -0.02 -0.31 16 25 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 26 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 28 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 29 H 0.10 0.10 7.40 -2.39 -0.02 0.09 16 30 H 0.09 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.39 -5.10 7.42 -74.06 -0.55 -5.65 16 32 H 0.08 0.04 7.98 -2.38 -0.02 0.02 16 33 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.41 -4.48 6.25 -92.70 -0.58 -5.06 16 35 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.14 0.69 6.19 -2.91 -0.02 0.67 16 37 H 0.11 -1.36 7.96 -2.39 -0.02 -1.38 16 38 H 0.41 -7.08 8.74 -74.06 -0.65 -7.73 16 39 H -0.30 -1.00 7.11 99.48 0.71 -0.30 16 40 H -0.29 -0.24 7.11 99.48 0.71 0.46 16 41 H 0.43 -4.29 8.19 -92.71 -0.76 -5.05 16 42 H 0.11 -1.20 8.14 -2.39 -0.02 -1.22 16 43 H 0.10 -0.46 7.94 -2.39 -0.02 -0.48 16 Total: 0.00 -30.18 367.63 -2.57 -32.75 By element: Atomic # 1 Polarization: -24.81 SS G_CDS: -1.41 Total: -26.23 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 4.44 Total: 8.92 kcal Atomic # 7 Polarization: 3.28 SS G_CDS: -3.52 Total: -0.25 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -4.17 Total: -12.70 kcal Atomic # 14 Polarization: -4.59 SS G_CDS: 2.10 Total: -2.50 kcal Total: -30.18 -2.57 -32.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_6580494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.198 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds