Wall clock time and date at job start Sun Mar 7 2021 07:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45203 * 109.46861 * 2 1 4 4 C 1.34222 * 116.99660 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00585 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99745 * 179.97438 * 4 3 2 7 7 H 1.08994 * 112.85099 * 48.80363 * 6 4 3 8 8 C 1.53784 * 113.61380 * 179.97438 * 6 4 3 9 9 C 1.53789 * 87.07985 * 139.98076 * 8 6 4 10 10 O 1.42898 * 113.61220 * 89.20084 * 9 8 6 11 11 C 1.52997 * 113.61249 * 220.01905 * 9 8 6 12 12 N 1.46502 * 109.47095 * 179.97438 * 11 9 8 13 13 C 1.34770 * 120.00411 * 180.02562 * 12 11 9 14 14 O 1.21652 * 119.99915 * 0.02562 * 13 12 11 15 15 C 1.46992 * 120.00279 * 180.02562 * 13 12 11 16 16 C 1.35809 * 125.14137 * 179.97438 * 15 13 12 17 17 C 1.46258 * 106.09024 * 179.97438 * 16 15 13 18 18 C 1.39774 * 134.14954 * 179.97438 * 17 16 15 19 19 C 1.50692 * 120.09964 * 0.02562 * 18 17 16 20 20 O 1.42901 * 109.46894 * 75.00231 * 19 18 17 21 21 Si 1.86295 * 109.47529 * 195.00240 * 19 18 17 22 22 C 1.36635 * 119.80651 * 180.02562 * 18 17 16 23 23 C 1.38768 * 120.49963 * 359.74813 * 22 18 17 24 24 C 1.38260 * 120.67279 * 0.51020 * 23 22 18 25 25 O 1.35965 * 120.12167 * 179.76739 * 24 23 22 26 26 C 1.42901 * 116.99638 * 359.72551 * 25 24 23 27 27 C 1.39453 * 119.76216 * 359.49469 * 24 23 22 28 28 O 1.34766 * 133.24576 * 180.22572 * 27 24 23 29 29 C 1.53783 * 87.08041 * 334.56598 * 9 8 6 30 30 H 1.08999 * 109.46870 * 299.99544 * 1 2 3 31 31 H 1.08992 * 109.47361 * 60.00095 * 1 2 3 32 32 H 1.09001 * 109.46943 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46955 * 239.99906 * 2 1 3 34 34 H 1.09002 * 109.46829 * 119.99830 * 2 1 3 35 35 H 1.09004 * 113.61496 * 25.43496 * 8 6 4 36 36 H 1.08988 * 113.69383 * 254.53841 * 8 6 4 37 37 H 0.96694 * 114.00168 * 181.52683 * 10 9 8 38 38 H 1.09000 * 109.47262 * 60.00115 * 11 9 8 39 39 H 1.08994 * 109.47462 * 299.99768 * 11 9 8 40 40 H 0.97006 * 119.99599 * 0.02562 * 12 11 9 41 41 H 1.08003 * 126.95535 * 0.02562 * 16 15 13 42 42 H 1.09008 * 109.47424 * 315.00213 * 19 18 17 43 43 H 0.96696 * 113.99916 * 60.00153 * 20 19 18 44 44 H 1.48505 * 110.00360 * 180.02562 * 21 19 18 45 45 H 1.48504 * 110.00003 * 301.32074 * 21 19 18 46 46 H 1.08003 * 119.74591 * 180.02562 * 22 18 17 47 47 H 1.07999 * 119.66269 * 180.25772 * 23 22 18 48 48 H 1.09005 * 109.47329 * 179.97438 * 26 25 24 49 49 H 1.08996 * 109.47352 * 299.99786 * 26 25 24 50 50 H 1.08996 * 109.47452 * 60.00239 * 26 25 24 51 51 H 1.09004 * 113.60916 * 139.97613 * 29 9 8 52 52 H 1.08993 * 113.61716 * 270.88394 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.4714 3.5817 0.7546 8 6 5.4582 2.9682 -0.0011 9 6 5.3564 4.1422 -0.9893 10 8 5.2834 5.4202 -0.3542 11 6 6.3986 4.0934 -2.1083 12 7 6.2198 5.2474 -2.9928 13 6 7.0308 5.4135 -4.0563 14 8 7.9111 4.6048 -4.2821 15 6 6.8518 6.5718 -4.9435 16 6 7.6067 6.8408 -6.0399 17 6 7.0724 8.0790 -6.6061 18 6 7.4029 8.8652 -7.7134 19 6 8.5443 8.4638 -8.6117 20 8 8.1409 7.3657 -9.4325 21 14 9.0207 9.9046 -9.6922 22 6 6.6881 9.9990 -7.9791 23 6 5.6322 10.3738 -7.1605 24 6 5.2911 9.6139 -6.0569 25 8 4.2574 9.9942 -5.2597 26 6 3.5695 11.1944 -5.6179 27 6 6.0075 8.4530 -5.7675 28 8 5.9121 7.5282 -4.7919 29 6 3.9862 3.5763 -1.3985 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.9128 2.0749 -0.4296 36 1 5.8907 3.2434 0.9607 37 1 5.1958 6.1608 -0.9697 38 1 6.2740 3.1744 -2.6811 39 1 7.3984 4.1187 -1.6751 40 1 5.5176 5.8921 -2.8130 41 1 8.4336 6.2578 -6.4178 42 1 9.3989 8.1678 -8.0032 43 1 7.3835 7.5579 -10.0021 44 1 10.1451 9.5213 -10.5834 45 1 7.8551 10.3381 -10.5038 46 1 6.9441 10.6056 -8.8352 47 1 5.0736 11.2703 -7.3854 48 1 2.7694 11.3822 -4.9018 49 1 4.2688 12.0304 -5.6092 50 1 3.1451 11.0860 -6.6160 51 1 3.2291 4.3429 -1.5641 52 1 4.0384 2.8494 -2.2089 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_6672420.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:07:08 Heat of formation + Delta-G solvation = -167.480353 kcal Electronic energy + Delta-G solvation = -38321.723814 eV Core-core repulsion = 33028.641889 eV Total energy + Delta-G solvation = -5293.081924 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.164 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.78266 -42.17824 -41.17133 -40.60722 -40.05926 -39.13041 -37.79860 -37.12171 -36.14443 -35.53583 -33.67964 -32.70557 -32.00888 -31.28063 -29.79870 -28.46315 -27.06857 -26.63686 -26.21834 -24.70033 -24.02513 -23.69693 -22.09610 -21.98264 -21.80054 -20.81591 -20.15915 -19.15210 -18.90798 -18.64293 -18.04559 -17.84393 -17.79586 -17.60013 -17.40774 -17.24264 -16.91484 -16.70260 -16.33259 -16.19372 -16.07330 -15.85714 -15.69826 -15.20390 -14.91128 -14.73845 -14.59180 -14.56065 -14.50059 -14.23849 -14.21615 -13.83649 -13.56118 -13.50546 -13.42751 -13.32084 -13.25311 -13.00120 -12.81252 -12.59363 -12.47312 -12.33154 -12.25920 -12.12856 -11.93532 -11.67225 -11.66414 -11.59794 -11.43497 -11.04990 -10.98293 -10.61649 -10.50173 -9.85328 -9.01929 -4.89229 -0.70229 0.08782 0.58330 1.01892 1.11547 1.29927 1.57483 1.59093 1.77532 1.82755 1.98158 2.13259 2.38270 2.79137 3.05111 3.11745 3.32310 3.37274 3.39524 3.45547 3.53877 3.65040 3.79569 3.85836 3.86094 3.93742 3.96619 4.01030 4.15695 4.17021 4.26575 4.28707 4.33524 4.43359 4.44003 4.48464 4.54683 4.56873 4.64141 4.75586 4.78469 4.81069 4.81977 4.85767 4.86081 4.87435 4.95906 5.03924 5.07401 5.10568 5.20755 5.31909 5.39276 5.54825 6.05565 6.25732 6.49604 6.51274 6.61186 6.72206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.360 6.360 4 C 0.470 3.530 5 O -0.537 6.537 6 C -0.100 4.100 7 H 0.145 0.855 8 C -0.104 4.104 9 C 0.112 3.888 10 O -0.538 6.538 11 C 0.104 3.896 12 N -0.702 5.702 13 C 0.606 3.394 14 O -0.542 6.542 15 C -0.033 4.033 16 C -0.111 4.111 17 C -0.097 4.097 18 C -0.100 4.100 19 C -0.089 4.089 20 O -0.548 6.548 21 Si 0.781 3.219 22 C -0.089 4.089 23 C -0.166 4.166 24 C 0.139 3.861 25 O -0.331 6.331 26 C 0.014 3.986 27 C 0.024 3.976 28 O -0.177 6.177 29 C -0.139 4.139 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.391 0.609 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.416 0.584 41 H 0.171 0.829 42 H 0.115 0.885 43 H 0.386 0.614 44 H -0.306 1.306 45 H -0.262 1.262 46 H 0.164 0.836 47 H 0.179 0.821 48 H 0.116 0.884 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.108 0.892 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.015 9.236 -1.107 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.277 6.277 4 C 0.315 3.685 5 O -0.427 6.427 6 C -0.119 4.119 7 H 0.162 0.838 8 C -0.142 4.142 9 C 0.070 3.930 10 O -0.346 6.346 11 C -0.019 4.019 12 N -0.354 5.354 13 C 0.392 3.608 14 O -0.421 6.421 15 C -0.083 4.083 16 C -0.132 4.132 17 C -0.098 4.098 18 C -0.101 4.101 19 C -0.197 4.197 20 O -0.356 6.356 21 Si 0.684 3.316 22 C -0.106 4.106 23 C -0.184 4.184 24 C 0.093 3.907 25 O -0.245 6.245 26 C -0.080 4.080 27 C -0.024 4.024 28 O -0.079 6.079 29 C -0.177 4.177 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.242 0.758 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.254 0.746 41 H 0.188 0.812 42 H 0.133 0.867 43 H 0.236 0.764 44 H -0.234 1.234 45 H -0.188 1.188 46 H 0.182 0.818 47 H 0.197 0.803 48 H 0.134 0.866 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.126 0.874 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.912 7.894 -0.785 9.331 hybrid contribution -0.960 -0.752 -0.870 1.498 sum -5.872 7.143 -1.655 9.393 Atomic orbital electron populations 1.21826 0.90658 1.04284 1.03751 1.23268 0.96977 0.79358 1.02489 1.86528 1.24289 1.33493 1.83380 1.24038 0.80552 0.92926 0.71015 1.90669 1.61119 1.44168 1.46756 1.22518 0.97086 0.89729 1.02591 0.83779 1.23065 0.93261 0.96722 1.01116 1.22139 0.93380 0.85507 0.91961 1.86578 1.95990 1.14828 1.37170 1.22076 1.00501 0.88956 0.90413 1.45635 1.35004 1.28223 1.26571 1.16596 0.81676 0.82385 0.80168 1.90920 1.34452 1.43655 1.73055 1.21811 0.93903 0.92572 1.00019 1.22862 1.00711 0.95673 0.93951 1.19567 0.96669 0.96195 0.97383 1.19538 0.99668 0.95473 0.95408 1.25372 0.97233 0.99914 0.97182 1.86609 1.53958 1.37766 1.57288 0.93901 0.77880 0.80148 0.79638 1.20883 0.94182 0.95365 1.00199 1.21373 1.00833 1.02152 0.94058 1.17958 0.89550 0.90749 0.92450 1.86143 1.42917 1.44766 1.50649 1.23486 0.97179 0.83840 1.03493 1.19158 0.99555 0.92468 0.91189 1.83991 1.48405 1.30154 1.45380 1.23689 0.98398 1.01145 0.94454 0.91232 0.91230 0.88537 0.91399 0.91405 0.87409 0.88575 0.75755 0.89527 0.90006 0.74602 0.81188 0.86708 0.76444 1.23407 1.18812 0.81848 0.80345 0.86572 0.90507 0.90909 0.87362 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.44 10.29 71.98 0.74 1.18 16 2 C 0.05 0.10 6.19 71.98 0.45 0.54 16 3 O -0.36 -1.57 10.22 -51.34 -0.52 -2.10 16 4 C 0.47 2.39 7.48 71.24 0.53 2.93 16 5 O -0.54 -5.98 15.65 21.98 0.34 -5.64 16 6 C -0.10 0.10 4.20 -11.01 -0.05 0.05 16 7 H 0.14 -0.47 8.14 -2.39 -0.02 -0.49 16 8 C -0.10 0.08 6.80 31.12 0.21 0.30 16 9 C 0.11 -0.38 1.48 -10.26 -0.02 -0.39 16 10 O -0.54 1.83 13.40 -148.98 -2.00 -0.17 16 11 C 0.10 -0.10 5.32 86.38 0.46 0.36 16 12 N -0.70 0.52 5.35 -466.81 -2.50 -1.98 16 13 C 0.61 3.84 7.80 86.54 0.67 4.51 16 14 O -0.54 -7.15 16.83 -4.20 -0.07 -7.23 16 15 C -0.03 -0.21 7.07 24.00 0.17 -0.04 16 16 C -0.11 -0.76 10.68 23.79 0.25 -0.50 16 17 C -0.10 -0.47 6.16 -20.24 -0.12 -0.60 16 18 C -0.10 -0.03 5.26 -19.87 -0.10 -0.13 16 19 C -0.09 0.04 2.70 71.23 0.19 0.23 16 20 O -0.55 -1.70 12.88 -148.98 -1.92 -3.62 16 21 Si 0.78 -3.31 30.25 68.60 2.08 -1.24 16 22 C -0.09 0.37 8.62 22.02 0.19 0.56 16 23 C -0.17 0.73 9.03 22.40 0.20 0.93 16 24 C 0.14 0.17 6.70 22.57 0.15 0.32 16 25 O -0.33 -0.14 10.50 -93.15 -0.98 -1.11 16 26 C 0.01 -0.12 9.81 113.37 1.11 1.00 16 27 C 0.02 0.13 7.35 23.14 0.17 0.30 16 28 O -0.18 -0.99 10.28 -13.32 -0.14 -1.12 16 29 C -0.14 0.56 7.01 31.12 0.22 0.78 16 30 H 0.07 -0.21 8.14 -2.39 -0.02 -0.22 16 31 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 32 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.07 0.15 8.13 -2.39 -0.02 0.13 16 34 H 0.07 0.16 8.13 -2.39 -0.02 0.14 16 35 H 0.11 0.10 7.39 -2.38 -0.02 0.08 16 36 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.39 -3.62 7.33 -74.06 -0.54 -4.17 16 38 H 0.09 0.01 7.94 -2.39 -0.02 -0.01 16 39 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.42 -2.34 6.75 -92.70 -0.63 -2.96 16 41 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.11 -0.03 7.96 -2.38 -0.02 -0.05 16 43 H 0.39 -1.29 8.70 -74.06 -0.64 -1.94 16 44 H -0.31 -1.35 7.11 99.48 0.71 -0.64 16 45 H -0.26 0.91 6.69 99.48 0.67 1.57 16 46 H 0.16 -1.50 4.81 -2.91 -0.01 -1.51 16 47 H 0.18 -2.00 6.26 -2.91 -0.02 -2.02 16 48 H 0.12 -1.26 8.14 -2.38 -0.02 -1.28 16 49 H 0.08 -0.88 7.67 -2.39 -0.02 -0.90 16 50 H 0.07 -0.80 7.65 -2.39 -0.02 -0.82 16 51 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 52 H 0.10 -0.31 7.91 -2.39 -0.02 -0.33 16 Total: 0.00 -26.76 438.95 -1.07 -27.83 By element: Atomic # 1 Polarization: -15.15 SS G_CDS: -0.80 Total: -15.95 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 5.43 Total: 12.32 kcal Atomic # 7 Polarization: 0.52 SS G_CDS: -2.50 Total: -1.98 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -5.28 Total: -20.98 kcal Atomic # 14 Polarization: -3.31 SS G_CDS: 2.08 Total: -1.24 kcal Total: -26.76 -1.07 -27.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_6672420.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.650 kcal (2) G-P(sol) polarization free energy of solvation -26.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds