Wall clock time and date at job start Sun Mar 7 2021 07:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45200 * 109.46985 * 2 1 4 4 C 1.34233 * 116.99945 * 180.02562 * 3 2 1 5 5 O 1.20835 * 119.99842 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00453 * 179.97438 * 4 3 2 7 7 H 1.09002 * 112.84182 * 311.19399 * 6 4 3 8 8 C 1.53779 * 113.61713 * 82.49646 * 6 4 3 9 9 C 1.53783 * 87.08150 * 139.98303 * 8 6 4 10 10 O 1.42900 * 113.61197 * 89.11378 * 9 8 6 11 11 C 1.53002 * 113.69219 * 220.00909 * 9 8 6 12 12 N 1.46494 * 109.46828 * 282.53681 * 11 9 8 13 13 C 1.34777 * 119.99856 * 180.02562 * 12 11 9 14 14 O 1.21698 * 119.99923 * 0.02562 * 13 12 11 15 15 C 1.46576 * 120.00273 * 179.97438 * 13 12 11 16 16 C 1.36646 * 125.46328 * 180.02562 * 15 13 12 17 17 C 1.37468 * 113.30192 * 180.02562 * 16 15 13 18 18 C 1.50708 * 122.45128 * 180.02562 * 17 16 15 19 19 C 1.33817 * 115.10381 * 359.97438 * 17 16 15 20 20 C 1.50694 * 124.52537 * 180.02562 * 19 17 16 21 21 O 1.42897 * 109.47216 * 313.64419 * 20 19 17 22 22 Si 1.86308 * 109.46927 * 193.64717 * 20 19 17 23 23 S 1.70624 * 110.94847 * 359.72865 * 19 17 16 24 24 C 1.53783 * 87.08320 * 334.57057 * 9 8 6 25 25 H 1.09000 * 109.47457 * 300.00777 * 1 2 3 26 26 H 1.09005 * 109.47086 * 60.00272 * 1 2 3 27 27 H 1.08999 * 109.47703 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47019 * 239.99439 * 2 1 3 29 29 H 1.08999 * 109.46681 * 119.99575 * 2 1 3 30 30 H 1.09003 * 113.61709 * 254.53478 * 8 6 4 31 31 H 1.09003 * 113.61393 * 25.43851 * 8 6 4 32 32 H 0.96702 * 113.99761 * 82.50473 * 10 9 8 33 33 H 1.09002 * 109.46954 * 42.53723 * 11 9 8 34 34 H 1.08998 * 109.46558 * 162.53552 * 11 9 8 35 35 H 0.97003 * 120.00233 * 359.97438 * 12 11 9 36 36 H 1.08009 * 123.35079 * 359.97438 * 16 15 13 37 37 H 1.09002 * 109.47015 * 95.81590 * 18 17 16 38 38 H 1.09001 * 109.46808 * 215.82104 * 18 17 16 39 39 H 1.08998 * 109.46857 * 335.81935 * 18 17 16 40 40 H 1.08995 * 109.47359 * 73.65124 * 20 19 17 41 41 H 0.96698 * 114.00210 * 300.00553 * 21 20 19 42 42 H 1.48500 * 109.99793 * 179.97438 * 22 20 19 43 43 H 1.48492 * 109.99834 * 301.31912 * 22 20 19 44 44 H 1.09001 * 113.61166 * 270.89003 * 24 9 8 45 45 H 1.08991 * 113.61949 * 139.97811 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.4709 3.5811 -0.7571 8 6 3.9868 3.5774 1.3956 9 6 5.3569 4.1427 0.9855 10 8 5.2819 5.4201 0.3494 11 6 6.4007 4.0959 2.1032 12 7 6.1485 5.1827 3.0527 13 6 6.9485 5.3389 4.1260 14 8 7.8806 4.5775 4.3062 15 6 6.6965 6.4265 5.0758 16 6 7.4338 6.6872 6.1964 17 6 6.9752 7.7693 6.9095 18 6 7.6356 8.2392 8.1801 19 6 5.9001 8.3756 6.3925 20 6 5.2241 9.5786 6.9982 21 8 5.0498 9.3709 8.4012 22 14 3.5610 9.8260 6.1958 23 16 5.4018 7.6097 4.9516 24 6 5.4583 2.9680 -0.0017 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.2298 4.3441 1.5608 31 1 4.0392 2.8511 2.2066 32 1 5.2179 6.1630 0.9652 33 1 6.3361 3.1388 2.6208 34 1 7.3965 4.2111 1.6752 35 1 5.4062 5.7902 2.9084 36 1 8.2911 6.1009 6.4928 37 1 8.3326 9.0452 7.9506 38 1 6.8754 8.6020 8.8719 39 1 8.1763 7.4101 8.6365 40 1 5.8410 10.4623 6.8356 41 1 4.5097 8.5994 8.6206 42 1 2.8839 11.0091 6.7849 43 1 3.7261 10.0113 4.7317 44 1 5.9129 2.0751 0.4274 45 1 5.8892 3.2427 -0.9644 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:07:13 Heat of formation + Delta-G solvation = -142.404480 kcal Electronic energy + Delta-G solvation = -29031.368804 eV Core-core repulsion = 24722.343162 eV Total energy + Delta-G solvation = -4309.025641 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.15346 -41.15223 -40.30915 -39.65518 -37.76735 -37.35630 -36.03194 -35.47613 -32.68717 -32.37410 -30.15472 -29.85114 -27.16058 -26.84950 -25.67741 -24.33747 -23.66866 -21.96995 -21.95754 -20.78728 -20.30191 -19.69192 -18.84385 -18.12580 -17.76969 -17.58212 -17.37465 -17.14353 -16.85034 -16.67841 -16.32328 -16.08759 -15.80925 -15.37713 -15.17107 -14.83456 -14.78671 -14.46908 -14.44748 -14.21611 -13.93458 -13.79636 -13.53491 -13.48143 -13.28956 -13.13562 -12.98312 -12.92362 -12.76855 -12.56239 -12.47738 -12.30155 -12.23909 -11.80774 -11.72747 -11.57180 -11.50111 -11.28233 -10.94491 -10.58099 -10.43718 -9.77434 -9.43105 -5.08277 -0.70015 0.24911 0.65087 1.04844 1.13407 1.26733 1.56689 1.59803 1.83367 1.91963 2.01418 2.82747 3.09950 3.32953 3.38279 3.42023 3.45413 3.60617 3.71023 3.89273 3.96447 4.03878 4.09547 4.19636 4.29154 4.30044 4.31521 4.42730 4.57038 4.58400 4.61076 4.67643 4.79506 4.81608 4.84810 4.86360 4.88975 4.90129 5.00251 5.06858 5.11274 5.13541 5.38678 5.42175 5.46194 6.17276 6.57236 6.64104 6.67582 6.91467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.470 3.530 5 O -0.539 6.539 6 C -0.100 4.100 7 H 0.145 0.855 8 C -0.137 4.137 9 C 0.111 3.889 10 O -0.538 6.538 11 C 0.107 3.893 12 N -0.712 5.712 13 C 0.593 3.407 14 O -0.568 6.568 15 C -0.284 4.284 16 C -0.058 4.058 17 C -0.097 4.097 18 C -0.107 4.107 19 C -0.237 4.237 20 C -0.032 4.032 21 O -0.540 6.540 22 Si 0.724 3.276 23 S 0.256 5.744 24 C -0.107 4.107 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.392 0.608 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.410 0.590 36 H 0.144 0.856 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.121 0.879 41 H 0.397 0.603 42 H -0.272 1.272 43 H -0.247 1.247 44 H 0.105 0.895 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 2.894 0.832 8.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.314 3.686 5 O -0.429 6.429 6 C -0.119 4.119 7 H 0.163 0.837 8 C -0.174 4.174 9 C 0.070 3.930 10 O -0.346 6.346 11 C -0.017 4.017 12 N -0.365 5.365 13 C 0.380 3.620 14 O -0.449 6.449 15 C -0.404 4.404 16 C -0.092 4.092 17 C -0.110 4.110 18 C -0.165 4.165 19 C -0.356 4.356 20 C -0.144 4.144 21 O -0.349 6.349 22 Si 0.625 3.375 23 S 0.525 5.475 24 C -0.145 4.145 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.114 0.886 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.116 0.884 32 H 0.243 0.757 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.162 0.838 37 H 0.083 0.917 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.138 0.862 41 H 0.248 0.752 42 H -0.198 1.198 43 H -0.173 1.173 44 H 0.123 0.877 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.116 2.984 -1.107 8.718 hybrid contribution 1.872 0.002 1.448 2.367 sum -6.244 2.986 0.341 6.930 Atomic orbital electron populations 1.21824 0.90627 1.04243 1.03810 1.23257 0.96984 0.79402 1.02434 1.86527 1.24222 1.33410 1.83371 1.24068 0.80560 0.92950 0.70979 1.90676 1.61178 1.44233 1.46811 1.22521 0.96845 0.89695 1.02838 0.83708 1.23673 0.98219 1.01238 0.94292 1.22133 0.93581 0.85457 0.91870 1.86583 1.96214 1.14683 1.37085 1.21949 0.99694 0.90908 0.89147 1.45562 1.32729 1.33556 1.24685 1.17139 0.81494 0.82834 0.80506 1.90855 1.31906 1.46369 1.75722 1.24534 1.07329 1.05065 1.03452 1.20809 0.99417 0.96503 0.92462 1.18755 0.96091 0.96092 1.00044 1.20755 1.01084 1.01263 0.93414 1.24628 1.02872 1.05396 1.02738 1.24625 1.08614 0.94654 0.86509 1.86455 1.75449 1.53164 1.19788 0.94146 0.77223 0.87817 0.78267 1.82528 1.26340 1.18594 1.20044 1.23070 0.93488 0.96822 1.01103 0.91062 0.91269 0.88649 0.91575 0.91371 0.86684 0.88426 0.75742 0.89995 0.90823 0.75292 0.83847 0.91652 0.88445 0.91497 0.86233 0.75232 1.19767 1.17283 0.87671 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.61 10.29 71.98 0.74 1.35 16 2 C 0.05 0.04 6.19 71.98 0.45 0.48 16 3 O -0.36 -1.04 10.22 -51.45 -0.53 -1.57 16 4 C 0.47 1.80 7.48 71.23 0.53 2.33 16 5 O -0.54 -5.54 15.65 21.94 0.34 -5.20 16 6 C -0.10 0.25 4.19 -11.01 -0.05 0.20 16 7 H 0.15 -0.71 8.14 -2.39 -0.02 -0.73 16 8 C -0.14 0.88 7.02 31.12 0.22 1.09 16 9 C 0.11 -0.55 1.41 -10.27 -0.01 -0.56 16 10 O -0.54 2.90 13.41 -148.98 -2.00 0.90 16 11 C 0.11 -0.20 5.26 86.38 0.45 0.25 16 12 N -0.71 2.19 5.31 -467.19 -2.48 -0.29 16 13 C 0.59 2.60 7.78 86.42 0.67 3.27 16 14 O -0.57 -7.68 16.84 -4.34 -0.07 -7.75 16 15 C -0.28 -0.35 6.45 24.07 0.16 -0.20 16 16 C -0.06 -0.16 9.78 21.72 0.21 0.05 16 17 C -0.10 0.00 5.75 -21.05 -0.12 -0.12 16 18 C -0.11 0.12 9.74 71.24 0.69 0.81 16 19 C -0.24 0.75 5.61 24.68 0.14 0.89 16 20 C -0.03 0.15 2.68 71.23 0.19 0.35 16 21 O -0.54 2.55 10.27 -148.98 -1.53 1.01 16 22 Si 0.72 -4.88 30.97 68.60 2.12 -2.76 16 23 S 0.26 -1.44 19.34 -56.49 -1.09 -2.53 16 24 C -0.11 0.18 6.80 31.12 0.21 0.39 16 25 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.07 -0.28 8.14 -2.38 -0.02 -0.30 16 27 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 28 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 29 H 0.07 0.07 8.13 -2.39 -0.02 0.05 16 30 H 0.11 -1.22 8.14 -2.39 -0.02 -1.24 16 31 H 0.10 -0.53 7.99 -2.39 -0.02 -0.55 16 32 H 0.39 -4.74 7.60 -74.06 -0.56 -5.30 16 33 H 0.08 -0.01 8.06 -2.39 -0.02 -0.03 16 34 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.41 -3.93 6.44 -92.71 -0.60 -4.53 16 36 H 0.14 0.62 8.06 -2.91 -0.02 0.60 16 37 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.10 -0.17 5.55 -2.39 -0.01 -0.18 16 39 H 0.07 -0.10 8.10 -2.39 -0.02 -0.12 16 40 H 0.12 -0.46 7.96 -2.39 -0.02 -0.48 16 41 H 0.40 -4.77 8.70 -74.06 -0.64 -5.42 16 42 H -0.27 -0.12 7.11 99.48 0.71 0.59 16 43 H -0.25 1.08 7.11 99.48 0.71 1.79 16 44 H 0.10 0.06 7.39 -2.39 -0.02 0.04 16 45 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 Total: 0.00 -23.00 389.92 -1.46 -24.46 By element: Atomic # 1 Polarization: -16.16 SS G_CDS: -0.72 Total: -16.88 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 4.49 Total: 10.59 kcal Atomic # 7 Polarization: 2.19 SS G_CDS: -2.48 Total: -0.29 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -3.78 Total: -12.61 kcal Atomic # 14 Polarization: -4.88 SS G_CDS: 2.12 Total: -2.76 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -1.09 Total: -2.53 kcal Total: -23.00 -1.46 -24.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.940 kcal (2) G-P(sol) polarization free energy of solvation -23.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds