Wall clock time and date at job start Sun Mar 7 2021 07:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.08999 * 112.84699 * 309.38839 * 6 4 3 8 8 C 1.53784 * 113.61671 * 80.58076 * 6 4 3 9 9 C 1.53956 * 87.02047 * 139.95482 * 8 6 4 10 10 O 1.42899 * 113.61283 * 89.19819 * 9 8 6 11 11 C 1.52997 * 113.66601 * 220.06964 * 9 8 6 12 12 N 1.46499 * 109.47195 * 282.55931 * 11 9 8 13 13 C 1.34774 * 120.00320 * 180.02562 * 12 11 9 14 14 O 1.21640 * 119.99567 * 0.02562 * 13 12 11 15 15 C 1.47187 * 120.00145 * 179.97438 * 13 12 11 16 16 C 1.36007 * 123.46290 * 359.70541 * 15 13 12 17 17 S 1.70444 * 110.81922 * 179.89133 * 16 15 13 18 18 C 1.75504 * 92.44528 * 0.32091 * 17 16 15 19 19 C 1.50699 * 124.71545 * 179.85705 * 18 17 16 20 20 O 1.42905 * 109.47132 * 244.95698 * 19 18 17 21 21 Si 1.86300 * 109.46837 * 4.95482 * 19 18 17 22 22 C 1.32774 * 110.57268 * 359.81733 * 18 17 16 23 23 C 1.53776 * 113.61785 * 178.19284 * 6 4 3 24 24 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 25 25 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 26 26 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 28 28 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 29 29 H 1.08998 * 113.61449 * 254.53506 * 8 6 4 30 30 H 1.08999 * 113.60890 * 25.43780 * 8 6 4 31 31 H 0.96708 * 113.99719 * 82.46720 * 10 9 8 32 32 H 1.08998 * 109.47277 * 42.56196 * 11 9 8 33 33 H 1.09004 * 109.46924 * 162.56249 * 11 9 8 34 34 H 0.97004 * 119.99898 * 359.97438 * 12 11 9 35 35 H 1.07998 * 124.58936 * 0.02562 * 16 15 13 36 36 H 1.08999 * 109.47256 * 124.95458 * 19 18 17 37 37 H 0.96692 * 113.99765 * 179.97438 * 20 19 18 38 38 H 1.48490 * 110.00233 * 300.00073 * 21 19 18 39 39 H 1.48501 * 109.99894 * 61.32514 * 21 19 18 40 40 H 1.08003 * 123.45412 * 179.97438 * 22 18 17 41 41 H 1.09003 * 113.61780 * 334.56500 * 23 6 4 42 42 H 1.09001 * 113.61843 * 105.46981 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.4926 3.5759 -0.7671 8 6 3.9445 3.5880 1.3989 9 6 5.3283 4.1496 1.0245 10 8 5.2735 5.4228 0.3779 11 6 6.3385 4.1095 2.1728 12 7 6.0596 5.2028 3.1072 13 6 6.8275 5.3656 4.2027 14 8 7.7526 4.6049 4.4153 15 6 6.5476 6.4644 5.1411 16 6 5.5373 7.3586 4.9689 17 16 5.5044 8.4885 6.2446 18 6 6.8896 7.7526 7.0321 19 6 7.5031 8.2388 8.3199 20 8 8.8307 8.7043 8.0690 21 14 6.4765 9.6319 9.0097 22 6 7.3213 6.7076 6.3361 23 6 5.4575 2.9682 0.0486 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 3.1830 4.3558 1.5353 30 1 3.9723 2.8679 2.2166 31 1 5.1921 6.1699 0.9865 32 1 6.2576 3.1560 2.6948 33 1 7.3467 4.2209 1.7738 34 1 5.3225 5.8101 2.9370 35 1 4.8479 7.3522 4.1377 36 1 7.5349 7.4202 9.0389 37 1 9.2872 9.0332 8.8554 38 1 6.4254 10.7542 8.0387 39 1 5.1024 9.1524 9.3047 40 1 8.1648 6.1019 6.6329 41 1 5.8998 2.0782 0.4966 42 1 5.9157 3.2363 -0.9033 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16466198_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:07:18 Heat of formation + Delta-G solvation = -136.064811 kcal Electronic energy + Delta-G solvation = -26859.240627 eV Core-core repulsion = 22706.027513 eV Total energy + Delta-G solvation = -4153.213114 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14256 -41.10980 -40.22431 -38.69907 -37.65452 -37.20971 -36.06107 -35.46542 -32.73838 -32.19722 -29.72140 -27.18081 -27.02447 -26.66090 -25.03518 -23.75869 -22.00458 -21.93230 -20.88850 -20.63248 -19.26997 -18.69041 -18.53092 -18.24348 -17.70528 -17.58863 -17.39321 -16.76504 -16.61243 -16.28953 -16.10174 -15.64958 -15.29678 -15.04409 -14.78651 -14.52704 -14.38734 -14.25571 -13.98181 -13.92054 -13.85452 -13.69706 -13.63650 -13.27552 -12.98875 -12.82294 -12.70758 -12.63783 -12.39656 -12.35494 -12.10907 -11.80393 -11.53594 -11.46222 -11.06195 -10.97322 -10.53365 -10.32498 -10.04497 -9.58130 -5.34508 -0.44825 0.29738 0.64833 0.83831 1.08654 1.15190 1.47595 1.60628 1.77860 1.90150 2.27785 2.64948 2.99298 3.19127 3.26291 3.32181 3.36622 3.56547 3.74961 3.83020 3.90209 3.92692 3.98229 4.05965 4.18907 4.24946 4.26990 4.28702 4.43835 4.46204 4.62176 4.63288 4.68363 4.71357 4.77521 4.80608 4.96580 4.97950 4.99440 5.10572 5.19150 5.45173 6.20013 6.28952 6.48101 6.73732 7.07557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.356 6.356 4 C 0.470 3.530 5 O -0.504 6.504 6 C -0.102 4.102 7 H 0.132 0.868 8 C -0.146 4.146 9 C 0.097 3.903 10 O -0.530 6.530 11 C 0.105 3.895 12 N -0.729 5.729 13 C 0.582 3.418 14 O -0.525 6.525 15 C -0.154 4.154 16 C -0.204 4.204 17 S 0.180 5.820 18 C -0.197 4.197 19 C -0.035 4.035 20 O -0.542 6.542 21 Si 0.671 3.329 22 C -0.049 4.049 23 C -0.100 4.100 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.377 0.623 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.395 0.605 35 H 0.172 0.828 36 H 0.085 0.915 37 H 0.385 0.615 38 H -0.233 1.233 39 H -0.238 1.238 40 H 0.159 0.841 41 H 0.115 0.885 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.296 4.023 3.708 6.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.313 3.687 5 O -0.391 6.391 6 C -0.121 4.121 7 H 0.150 0.850 8 C -0.183 4.183 9 C 0.055 3.945 10 O -0.335 6.335 11 C -0.019 4.019 12 N -0.383 5.383 13 C 0.368 3.632 14 O -0.401 6.401 15 C -0.173 4.173 16 C -0.342 4.342 17 S 0.446 5.554 18 C -0.313 4.313 19 C -0.148 4.148 20 O -0.349 6.349 21 Si 0.570 3.430 22 C -0.078 4.078 23 C -0.137 4.137 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.117 0.883 31 H 0.226 0.774 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.189 0.811 36 H 0.103 0.897 37 H 0.234 0.766 38 H -0.157 1.157 39 H -0.162 1.162 40 H 0.176 0.824 41 H 0.133 0.867 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.183 4.333 2.937 7.366 hybrid contribution 0.440 -1.254 -0.387 1.384 sum -4.743 3.078 2.549 6.203 Atomic orbital electron populations 1.21820 0.92316 1.03285 1.03643 1.23095 0.95627 0.79849 1.02785 1.86517 1.24357 1.32763 1.83677 1.23520 0.80710 0.92292 0.72179 1.90692 1.60510 1.42899 1.45045 1.22412 0.97276 0.91000 1.01396 0.84999 1.23697 0.98190 1.00959 0.95485 1.22425 0.93797 0.85612 0.92671 1.86603 1.96156 1.14377 1.36395 1.21966 0.99810 0.91112 0.89018 1.45706 1.34579 1.33221 1.24757 1.17541 0.81734 0.83663 0.80283 1.90847 1.29653 1.45149 1.74453 1.20183 0.99240 0.99152 0.98712 1.25786 1.02911 1.00737 1.04790 1.83215 1.27946 1.29908 1.14324 1.23434 1.03148 1.01944 1.02769 1.24001 0.90121 1.05980 0.94721 1.86523 1.25807 1.84469 1.38119 0.94649 0.80422 0.79921 0.88050 1.21043 0.98975 0.96175 0.91617 1.23048 0.93308 0.96480 1.00889 0.91406 0.91343 0.89976 0.91034 0.91102 0.89109 0.88313 0.77422 0.89554 0.89664 0.76998 0.81107 0.89686 0.76650 1.15682 1.16212 0.82364 0.86687 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 10.29 37.15 0.38 0.61 16 2 C 0.06 0.03 6.19 37.15 0.23 0.26 16 3 O -0.36 -0.64 10.22 -39.26 -0.40 -1.04 16 4 C 0.47 0.98 7.48 36.00 0.27 1.25 16 5 O -0.50 -2.45 15.66 -18.76 -0.29 -2.74 16 6 C -0.10 0.06 4.19 -90.96 -0.38 -0.32 16 7 H 0.13 -0.19 8.14 -51.93 -0.42 -0.61 16 8 C -0.15 0.32 7.03 -25.83 -0.18 0.14 16 9 C 0.10 -0.18 1.41 -89.71 -0.13 -0.30 16 10 O -0.53 0.89 13.42 -35.23 -0.47 0.42 16 11 C 0.10 -0.07 5.26 -4.04 -0.02 -0.09 16 12 N -0.73 0.79 5.29 -61.46 -0.32 0.46 16 13 C 0.58 1.51 7.79 -12.63 -0.10 1.42 16 14 O -0.52 -3.50 16.80 5.24 0.09 -3.41 16 15 C -0.15 -0.25 5.98 -104.63 -0.63 -0.88 16 16 C -0.20 0.17 10.38 29.93 0.31 0.48 16 17 S 0.18 0.04 20.20 -107.50 -2.17 -2.13 16 18 C -0.20 -0.29 5.69 -36.18 -0.21 -0.50 16 19 C -0.04 0.03 2.93 36.01 0.11 0.13 16 20 O -0.54 0.13 12.86 -35.23 -0.45 -0.32 16 21 Si 0.67 -1.38 30.92 -169.99 -5.26 -6.64 16 22 C -0.05 -0.13 9.95 -39.02 -0.39 -0.51 16 23 C -0.10 0.06 6.79 -25.92 -0.18 -0.11 16 24 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 25 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 26 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 27 H 0.07 0.04 8.13 -51.93 -0.42 -0.38 16 28 H 0.07 0.03 8.13 -51.93 -0.42 -0.39 16 29 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 30 H 0.10 -0.18 7.99 -51.93 -0.42 -0.59 16 31 H 0.38 -1.86 7.60 45.56 0.35 -1.51 16 32 H 0.09 0.00 8.06 -51.93 -0.42 -0.42 16 33 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 34 H 0.40 -1.68 5.82 -40.82 -0.24 -1.92 16 35 H 0.17 -0.77 7.01 -52.49 -0.37 -1.14 16 36 H 0.09 -0.20 7.96 -51.93 -0.41 -0.62 16 37 H 0.39 -2.09 8.74 45.56 0.40 -1.69 16 38 H -0.23 -0.16 7.11 56.52 0.40 0.24 16 39 H -0.24 0.02 7.11 56.52 0.40 0.42 16 40 H 0.16 0.47 8.06 -52.48 -0.42 0.05 16 41 H 0.11 -0.01 7.41 -51.93 -0.38 -0.39 16 42 H 0.09 -0.05 8.14 -51.93 -0.42 -0.48 16 LS Contribution 372.86 15.07 5.62 5.62 Total: 0.00 -10.96 372.86 -9.49 -20.45 By element: Atomic # 1 Polarization: -7.31 SS G_CDS: -4.92 Total: -12.23 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.91 Total: 1.57 kcal Atomic # 7 Polarization: 0.79 SS G_CDS: -0.32 Total: 0.46 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -1.53 Total: -7.10 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: -5.26 Total: -6.64 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.17 Total: -2.13 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -10.96 -9.49 -20.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.619 kcal (2) G-P(sol) polarization free energy of solvation -10.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds