Wall clock time and date at job start Sun Mar 7 2021 07:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.08999 * 112.84699 * 309.38839 * 6 4 3 8 8 C 1.53784 * 113.61671 * 80.58076 * 6 4 3 9 9 C 1.53956 * 87.02047 * 139.95482 * 8 6 4 10 10 O 1.42899 * 113.61283 * 89.19819 * 9 8 6 11 11 C 1.52997 * 113.66601 * 220.06964 * 9 8 6 12 12 N 1.46499 * 109.47195 * 282.55931 * 11 9 8 13 13 C 1.34774 * 120.00320 * 180.02562 * 12 11 9 14 14 O 1.21640 * 119.99567 * 0.02562 * 13 12 11 15 15 C 1.47187 * 120.00145 * 179.97438 * 13 12 11 16 16 C 1.36007 * 123.46290 * 359.70541 * 15 13 12 17 17 S 1.70444 * 110.81922 * 179.89133 * 16 15 13 18 18 C 1.75504 * 92.44528 * 0.32091 * 17 16 15 19 19 C 1.50699 * 124.71545 * 179.85705 * 18 17 16 20 20 O 1.42905 * 109.47132 * 244.95698 * 19 18 17 21 21 Si 1.86300 * 109.46837 * 4.95482 * 19 18 17 22 22 C 1.32774 * 110.57268 * 359.81733 * 18 17 16 23 23 C 1.53776 * 113.61785 * 178.19284 * 6 4 3 24 24 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 25 25 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 26 26 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 28 28 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 29 29 H 1.08998 * 113.61449 * 254.53506 * 8 6 4 30 30 H 1.08999 * 113.60890 * 25.43780 * 8 6 4 31 31 H 0.96708 * 113.99719 * 82.46720 * 10 9 8 32 32 H 1.08998 * 109.47277 * 42.56196 * 11 9 8 33 33 H 1.09004 * 109.46924 * 162.56249 * 11 9 8 34 34 H 0.97004 * 119.99898 * 359.97438 * 12 11 9 35 35 H 1.07998 * 124.58936 * 0.02562 * 16 15 13 36 36 H 1.08999 * 109.47256 * 124.95458 * 19 18 17 37 37 H 0.96692 * 113.99765 * 179.97438 * 20 19 18 38 38 H 1.48490 * 110.00233 * 300.00073 * 21 19 18 39 39 H 1.48501 * 109.99894 * 61.32514 * 21 19 18 40 40 H 1.08003 * 123.45412 * 179.97438 * 22 18 17 41 41 H 1.09003 * 113.61780 * 334.56500 * 23 6 4 42 42 H 1.09001 * 113.61843 * 105.46981 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.4926 3.5759 -0.7671 8 6 3.9445 3.5880 1.3989 9 6 5.3283 4.1496 1.0245 10 8 5.2735 5.4228 0.3779 11 6 6.3385 4.1095 2.1728 12 7 6.0596 5.2028 3.1072 13 6 6.8275 5.3656 4.2027 14 8 7.7526 4.6049 4.4153 15 6 6.5476 6.4644 5.1411 16 6 5.5373 7.3586 4.9689 17 16 5.5044 8.4885 6.2446 18 6 6.8896 7.7526 7.0321 19 6 7.5031 8.2388 8.3199 20 8 8.8307 8.7043 8.0690 21 14 6.4765 9.6319 9.0097 22 6 7.3213 6.7076 6.3361 23 6 5.4575 2.9682 0.0486 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5137 0.8901 29 1 3.1830 4.3558 1.5353 30 1 3.9723 2.8679 2.2166 31 1 5.1921 6.1699 0.9865 32 1 6.2576 3.1560 2.6948 33 1 7.3467 4.2209 1.7738 34 1 5.3225 5.8101 2.9370 35 1 4.8479 7.3522 4.1377 36 1 7.5349 7.4202 9.0389 37 1 9.2872 9.0332 8.8554 38 1 6.4254 10.7542 8.0387 39 1 5.1024 9.1524 9.3047 40 1 8.1648 6.1019 6.6329 41 1 5.8998 2.0782 0.4966 42 1 5.9157 3.2363 -0.9033 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_6894386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:07:18 Heat of formation + Delta-G solvation = -140.200344 kcal Electronic energy + Delta-G solvation = -26859.419957 eV Core-core repulsion = 22706.027513 eV Total energy + Delta-G solvation = -4153.392444 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.18882 -41.24470 -40.26537 -38.71415 -37.79979 -37.21302 -36.06527 -35.50162 -32.71837 -32.20728 -29.72233 -27.10297 -27.01180 -26.68250 -25.06654 -23.74297 -22.07284 -21.98801 -20.84191 -20.68208 -19.27642 -18.76704 -18.48016 -18.29934 -17.80876 -17.56612 -17.40942 -16.82870 -16.64570 -16.28637 -16.07374 -15.66974 -15.32398 -15.06167 -14.83086 -14.57390 -14.35714 -14.23491 -13.94035 -13.92162 -13.82262 -13.74198 -13.55019 -13.30000 -13.00508 -12.82115 -12.68439 -12.59895 -12.41503 -12.31529 -12.09836 -11.79750 -11.60836 -11.52037 -11.19511 -10.96298 -10.48307 -10.39697 -10.04792 -9.62066 -5.18720 -0.46482 0.27894 0.62118 0.71912 1.01265 1.19436 1.56557 1.60395 1.85635 1.90324 2.14060 2.80413 3.05931 3.28394 3.34933 3.39214 3.43497 3.69193 3.78697 3.86133 3.92853 3.94050 4.00384 4.15262 4.18272 4.26708 4.28003 4.41277 4.54279 4.58451 4.60289 4.64421 4.76811 4.81937 4.85506 4.86822 4.89921 5.04694 5.06579 5.09918 5.12630 5.38420 6.24731 6.56803 6.60240 6.83427 6.98745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.539 6.539 6 C -0.100 4.100 7 H 0.146 0.854 8 C -0.136 4.136 9 C 0.114 3.886 10 O -0.538 6.538 11 C 0.107 3.893 12 N -0.708 5.708 13 C 0.581 3.419 14 O -0.577 6.577 15 C -0.179 4.179 16 C -0.180 4.180 17 S 0.188 5.812 18 C -0.212 4.212 19 C -0.051 4.051 20 O -0.564 6.564 21 Si 0.758 3.242 22 C -0.072 4.072 23 C -0.108 4.108 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.393 0.607 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.414 0.586 35 H 0.212 0.788 36 H 0.099 0.901 37 H 0.405 0.595 38 H -0.270 1.270 39 H -0.263 1.263 40 H 0.141 0.859 41 H 0.104 0.896 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 5.523 3.743 8.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.314 3.686 5 O -0.429 6.429 6 C -0.119 4.119 7 H 0.163 0.837 8 C -0.173 4.173 9 C 0.073 3.927 10 O -0.346 6.346 11 C -0.017 4.017 12 N -0.362 5.362 13 C 0.368 3.632 14 O -0.458 6.458 15 C -0.196 4.196 16 C -0.318 4.318 17 S 0.454 5.546 18 C -0.328 4.328 19 C -0.162 4.162 20 O -0.375 6.375 21 Si 0.659 3.341 22 C -0.101 4.101 23 C -0.145 4.145 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.244 0.756 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.252 0.748 35 H 0.229 0.771 36 H 0.117 0.883 37 H 0.257 0.743 38 H -0.195 1.195 39 H -0.188 1.188 40 H 0.159 0.841 41 H 0.122 0.878 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.942 5.855 2.975 9.557 hybrid contribution 0.962 -1.692 -0.423 1.992 sum -5.980 4.163 2.553 7.721 Atomic orbital electron populations 1.21823 0.90601 1.04284 1.03784 1.23264 0.97004 0.79381 1.02452 1.86526 1.24224 1.33452 1.83382 1.24078 0.80564 0.92971 0.70989 1.90676 1.61178 1.44238 1.46793 1.22524 0.96838 0.89641 1.02877 0.83650 1.23684 0.98268 1.01106 0.94285 1.22130 0.93584 0.85529 0.91502 1.86586 1.96111 1.14703 1.37157 1.21903 0.99628 0.90849 0.89301 1.45494 1.34232 1.33032 1.23406 1.17757 0.81285 0.83319 0.80875 1.90817 1.32047 1.47095 1.75808 1.20096 1.00656 1.00088 0.98808 1.26174 1.01928 0.98654 1.05042 1.83230 1.27108 1.29783 1.14479 1.23795 1.03675 1.01742 1.03608 1.24325 0.90334 1.07465 0.94115 1.86470 1.26226 1.84734 1.40065 0.93561 0.77916 0.76562 0.86067 1.21073 0.99306 0.96853 0.92839 1.23066 0.93544 0.96786 1.01149 0.91156 0.91220 0.88577 0.91491 0.91424 0.86789 0.88680 0.75628 0.90407 0.91093 0.74826 0.77110 0.88299 0.74282 1.19533 1.18791 0.84107 0.87797 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.51 10.29 71.98 0.74 1.25 16 2 C 0.05 0.07 6.19 71.98 0.45 0.52 16 3 O -0.36 -1.34 10.22 -51.41 -0.53 -1.87 16 4 C 0.47 2.21 7.48 71.23 0.53 2.74 16 5 O -0.54 -6.03 15.66 21.94 0.34 -5.69 16 6 C -0.10 0.16 4.19 -11.02 -0.05 0.12 16 7 H 0.15 -0.61 8.14 -2.39 -0.02 -0.63 16 8 C -0.14 0.76 7.03 31.18 0.22 0.98 16 9 C 0.11 -0.48 1.41 -10.21 -0.01 -0.50 16 10 O -0.54 2.73 13.42 -148.98 -2.00 0.73 16 11 C 0.11 -0.09 5.26 86.38 0.45 0.37 16 12 N -0.71 1.81 5.29 -466.60 -2.47 -0.66 16 13 C 0.58 3.57 7.79 86.59 0.67 4.24 16 14 O -0.58 -9.14 16.80 -4.16 -0.07 -9.21 16 15 C -0.18 -0.66 5.98 -19.87 -0.12 -0.78 16 16 C -0.18 0.55 10.38 67.30 0.70 1.25 16 17 S 0.19 -0.05 20.20 -56.49 -1.14 -1.19 16 18 C -0.21 -0.76 5.69 24.51 0.14 -0.62 16 19 C -0.05 0.06 2.93 71.24 0.21 0.27 16 20 O -0.56 0.04 12.86 -148.98 -1.92 -1.88 16 21 Si 0.76 -3.38 30.92 68.60 2.12 -1.26 16 22 C -0.07 -0.48 9.95 22.67 0.23 -0.26 16 23 C -0.11 0.08 6.79 31.12 0.21 0.29 16 24 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 25 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 28 H 0.07 0.12 8.13 -2.38 -0.02 0.10 16 29 H 0.11 -1.12 8.14 -2.39 -0.02 -1.13 16 30 H 0.09 -0.40 7.99 -2.39 -0.02 -0.42 16 31 H 0.39 -4.86 7.60 -74.05 -0.56 -5.43 16 32 H 0.08 0.11 8.06 -2.39 -0.02 0.09 16 33 H 0.07 0.19 8.14 -2.38 -0.02 0.17 16 34 H 0.41 -4.36 5.82 -92.71 -0.54 -4.90 16 35 H 0.21 -2.64 7.01 -2.91 -0.02 -2.66 16 36 H 0.10 -0.45 7.96 -2.39 -0.02 -0.47 16 37 H 0.41 -4.43 8.74 -74.06 -0.65 -5.07 16 38 H -0.27 -0.39 7.11 99.48 0.71 0.31 16 39 H -0.26 0.15 7.11 99.48 0.71 0.86 16 40 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.10 0.17 7.41 -2.39 -0.02 0.15 16 42 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 Total: 0.00 -28.09 372.86 -1.91 -30.00 By element: Atomic # 1 Polarization: -18.22 SS G_CDS: -0.63 Total: -18.85 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 4.37 Total: 9.87 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -2.47 Total: -0.66 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -4.17 Total: -17.91 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.12 Total: -1.26 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.14 Total: -1.19 kcal Total: -28.09 -1.91 -30.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_6894386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.198 kcal (2) G-P(sol) polarization free energy of solvation -28.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds