Wall clock time and date at job start Sun Mar 7 2021 07:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45206 * 109.46777 * 2 1 4 4 C 1.34224 * 117.00077 * 179.97438 * 3 2 1 5 5 O 1.20833 * 120.00103 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00302 * 180.02562 * 4 3 2 7 7 H 1.09004 * 112.85403 * 50.32645 * 6 4 3 8 8 C 1.53777 * 113.61736 * 181.52975 * 6 4 3 9 9 C 1.53781 * 87.08386 * 139.97799 * 8 6 4 10 10 O 1.42900 * 113.61478 * 89.20161 * 9 8 6 11 11 C 1.53004 * 113.61611 * 220.01877 * 9 8 6 12 12 N 1.46493 * 109.47506 * 179.97438 * 11 9 8 13 13 C 1.34771 * 120.00186 * 180.02562 * 12 11 9 14 14 O 1.21624 * 120.00244 * 359.97438 * 13 12 11 15 15 C 1.47266 * 120.00020 * 179.97438 * 13 12 11 16 16 C 1.36769 * 126.94463 * 179.97438 * 15 13 12 17 17 C 1.50699 * 125.80013 * 359.97438 * 16 15 13 18 18 N 1.34655 * 108.39947 * 180.02562 * 16 15 13 19 19 C 1.36452 * 110.29892 * 359.97438 * 18 16 15 20 20 C 1.50700 * 125.57162 * 179.97438 * 19 18 16 21 21 O 1.42903 * 109.46743 * 65.00608 * 20 19 18 22 22 Si 1.86303 * 109.46759 * 185.00326 * 20 19 18 23 23 C 1.34492 * 108.85194 * 359.71471 * 19 18 16 24 24 C 1.53790 * 113.61063 * 279.13608 * 6 4 3 25 25 H 1.09001 * 109.47362 * 60.00671 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 299.99948 * 1 2 3 28 28 H 1.09000 * 109.47486 * 240.00051 * 2 1 3 29 29 H 1.09001 * 109.47362 * 119.99329 * 2 1 3 30 30 H 1.09002 * 113.61542 * 254.52757 * 8 6 4 31 31 H 1.09000 * 113.61623 * 25.34459 * 8 6 4 32 32 H 0.96701 * 113.99940 * 180.02562 * 10 9 8 33 33 H 1.09001 * 109.47196 * 300.00003 * 11 9 8 34 34 H 1.09003 * 109.46987 * 59.99231 * 11 9 8 35 35 H 0.97008 * 119.99895 * 359.97438 * 12 11 9 36 36 H 1.09001 * 109.46963 * 89.99751 * 17 16 15 37 37 H 1.09003 * 109.47457 * 209.99861 * 17 16 15 38 38 H 1.08998 * 109.47096 * 330.00127 * 17 16 15 39 39 H 0.97000 * 124.85096 * 179.97438 * 18 16 15 40 40 H 1.09000 * 109.47326 * 305.00085 * 20 19 18 41 41 H 0.96696 * 114.00139 * 59.99810 * 21 20 19 42 42 H 1.48492 * 110.00091 * 58.68368 * 22 20 19 43 43 H 1.48503 * 109.99602 * 180.02562 * 22 20 19 44 44 H 1.08000 * 126.82996 * 180.26744 * 23 19 18 45 45 H 1.08995 * 113.61221 * 334.55991 * 24 6 4 46 46 H 1.08992 * 113.61243 * 105.47010 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9205 2.9376 0.0012 7 1 3.4895 3.5736 0.7743 8 6 5.4575 2.9685 -0.0359 9 6 5.3319 4.1532 -1.0084 10 8 5.2746 5.4242 -0.3579 11 6 6.3467 4.1168 -2.1530 12 7 6.1466 5.2804 -3.0202 13 6 6.9316 5.4581 -4.1012 14 8 7.8064 4.6527 -4.3565 15 6 6.7300 6.6275 -4.9733 16 6 7.4394 6.9459 -6.0985 17 6 8.5830 6.1509 -6.6739 18 7 6.9430 8.0910 -6.6040 19 6 5.9117 8.5413 -5.8323 20 6 5.1104 9.7927 -6.0834 21 8 4.3821 9.6548 -7.3051 22 14 3.9186 10.0595 -4.6765 23 6 5.7236 7.6828 -4.8143 24 6 3.9497 3.5927 -1.3899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 5.9121 3.2336 0.9187 31 1 5.9016 2.0795 -0.4837 32 1 5.1952 6.1732 -0.9644 33 1 7.3568 4.1375 -1.7439 34 1 6.2081 3.2040 -2.7324 35 1 5.4485 5.9226 -2.8168 36 1 8.1961 5.4191 -7.3831 37 1 9.2720 6.8232 -7.1851 38 1 9.1079 5.6352 -5.8698 39 1 7.2717 8.5326 -7.4027 40 1 5.7837 10.6468 -6.1560 41 1 3.7621 8.9128 -7.3118 42 1 4.6616 10.1725 -3.3959 43 1 3.1218 11.2903 -4.9124 44 1 4.9813 7.7573 -4.0334 45 1 3.9807 2.8752 -2.2098 46 1 3.1887 4.3608 -1.5268 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16466198_9865296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:07:39 Heat of formation + Delta-G solvation = -137.955417 kcal Electronic energy + Delta-G solvation = -29492.558413 eV Core-core repulsion = 25157.373680 eV Total energy + Delta-G solvation = -4335.184733 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.47501 -42.05267 -40.73508 -39.72590 -37.74636 -37.68579 -35.95222 -35.26586 -32.88456 -32.66061 -32.25653 -29.71145 -28.86047 -26.96899 -26.46122 -25.28673 -23.84039 -23.02888 -21.88898 -21.40938 -20.91238 -20.71247 -19.16392 -18.82989 -18.00923 -17.74180 -17.33471 -17.29792 -16.88119 -16.62268 -16.51825 -16.10596 -15.96802 -15.39956 -15.29397 -15.02298 -14.91869 -14.68551 -14.58462 -14.25029 -14.08480 -14.00952 -13.85173 -13.74403 -13.46340 -13.39438 -13.21253 -12.94132 -12.92082 -12.70904 -12.53699 -12.23012 -12.13240 -12.04559 -11.68819 -11.54890 -11.41164 -10.95277 -10.83722 -10.62518 -10.22770 -9.84142 -9.17626 -4.91495 0.69184 1.08332 1.21994 1.28994 1.64052 1.75200 1.94886 2.09719 2.46862 2.50573 2.90811 3.16591 3.43752 3.49353 3.51177 3.55025 3.59158 3.87397 3.95199 3.98256 4.05887 4.09226 4.19570 4.26470 4.33276 4.40062 4.40611 4.49260 4.64001 4.66677 4.70402 4.73391 4.74798 4.83629 4.90979 4.92809 4.95590 4.97333 5.14023 5.15363 5.18232 5.39432 5.44565 5.68721 5.87655 6.42571 6.55952 6.67063 6.69894 6.71902 7.31046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.470 3.530 5 O -0.540 6.540 6 C -0.101 4.101 7 H 0.145 0.855 8 C -0.109 4.109 9 C 0.114 3.886 10 O -0.539 6.539 11 C 0.110 3.890 12 N -0.712 5.712 13 C 0.591 3.409 14 O -0.586 6.586 15 C -0.258 4.258 16 C 0.109 3.891 17 C -0.096 4.096 18 N -0.531 5.531 19 C -0.016 4.016 20 C -0.058 4.058 21 O -0.559 6.559 22 Si 0.810 3.190 23 C -0.153 4.153 24 C -0.134 4.134 25 H 0.071 0.929 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.393 0.607 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.412 0.588 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.426 0.574 40 H 0.107 0.893 41 H 0.398 0.602 42 H -0.274 1.274 43 H -0.302 1.302 44 H 0.181 0.819 45 H 0.095 0.905 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 3.192 -1.224 7.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.021 4.021 3 O -0.275 6.275 4 C 0.314 3.686 5 O -0.430 6.430 6 C -0.119 4.119 7 H 0.163 0.837 8 C -0.147 4.147 9 C 0.072 3.928 10 O -0.347 6.347 11 C -0.014 4.014 12 N -0.366 5.366 13 C 0.381 3.619 14 O -0.468 6.468 15 C -0.268 4.268 16 C -0.011 4.011 17 C -0.154 4.154 18 N -0.127 5.127 19 C -0.126 4.126 20 C -0.167 4.167 21 O -0.367 6.367 22 Si 0.713 3.287 23 C -0.177 4.177 24 C -0.171 4.171 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.244 0.756 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.250 0.750 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.265 0.735 40 H 0.125 0.875 41 H 0.248 0.752 42 H -0.200 1.200 43 H -0.230 1.230 44 H 0.198 0.802 45 H 0.113 0.887 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.300 3.071 -0.488 6.145 hybrid contribution 0.772 0.485 -1.061 1.399 sum -4.528 3.556 -1.550 5.963 Atomic orbital electron populations 1.21822 0.90619 1.04217 1.03823 1.23255 0.96988 0.79451 1.02398 1.86527 1.24233 1.33354 1.83382 1.24104 0.80539 0.92998 0.70926 1.90673 1.61194 1.44287 1.46873 1.22539 0.96769 0.89548 1.03092 0.83702 1.23069 0.93556 0.96897 1.01163 1.22130 0.93740 0.85393 0.91492 1.86573 1.96157 1.14802 1.37181 1.21805 0.99533 0.89449 0.90642 1.45441 1.37181 1.27363 1.26632 1.17545 0.80194 0.84077 0.80088 1.90757 1.35221 1.46987 1.73806 1.20035 1.05370 1.00411 1.00945 1.20583 0.97444 0.88511 0.94588 1.20574 0.93914 0.98907 1.01964 1.41638 1.27133 1.19578 1.24386 1.21026 0.95191 1.00277 0.96060 1.25107 0.99002 0.94173 0.98427 1.86477 1.58380 1.55952 1.35918 0.93212 0.79242 0.83774 0.72428 1.22048 1.01212 0.93898 1.00524 1.23688 0.98328 1.01052 0.94070 0.91044 0.88688 0.91253 0.91413 0.91610 0.89042 0.87909 0.75593 0.91648 0.90663 0.75010 0.89952 0.89840 0.90000 0.73534 0.87549 0.75178 1.20039 1.22976 0.80210 0.88652 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.57 10.29 71.98 0.74 1.31 16 2 C 0.05 0.05 6.19 71.98 0.45 0.50 16 3 O -0.36 -1.17 10.22 -51.35 -0.52 -1.70 16 4 C 0.47 2.05 7.48 71.23 0.53 2.58 16 5 O -0.54 -5.90 15.66 21.94 0.34 -5.55 16 6 C -0.10 0.20 4.19 -11.01 -0.05 0.15 16 7 H 0.15 -0.65 8.14 -2.39 -0.02 -0.67 16 8 C -0.11 0.09 6.79 31.12 0.21 0.30 16 9 C 0.11 -0.50 1.49 -10.21 -0.02 -0.51 16 10 O -0.54 2.75 13.41 -148.98 -2.00 0.76 16 11 C 0.11 -0.12 5.33 86.38 0.46 0.34 16 12 N -0.71 1.94 5.33 -466.54 -2.49 -0.55 16 13 C 0.59 2.82 7.81 86.62 0.68 3.50 16 14 O -0.59 -7.54 14.81 -4.11 -0.06 -7.60 16 15 C -0.26 -0.46 6.29 -19.04 -0.12 -0.58 16 16 C 0.11 0.16 7.17 41.78 0.30 0.46 16 17 C -0.10 -0.08 9.88 71.24 0.70 0.62 16 18 N -0.53 1.28 5.90 -171.07 -1.01 0.27 16 19 C -0.02 0.06 6.47 40.98 0.27 0.32 16 20 C -0.06 0.31 3.08 71.24 0.22 0.53 16 21 O -0.56 2.36 12.88 -148.98 -1.92 0.44 16 22 Si 0.81 -6.29 30.58 68.60 2.10 -4.20 16 23 C -0.15 0.68 9.03 23.62 0.21 0.90 16 24 C -0.13 0.80 7.03 31.18 0.22 1.02 16 25 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 27 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.07 0.10 8.13 -2.39 -0.02 0.08 16 29 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 30 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.10 0.16 7.41 -2.39 -0.02 0.14 16 32 H 0.39 -4.82 7.30 -74.06 -0.54 -5.36 16 33 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.08 0.08 7.95 -2.39 -0.02 0.06 16 35 H 0.41 -4.12 6.16 -92.70 -0.57 -4.69 16 36 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.08 0.48 6.47 -2.39 -0.02 0.46 16 39 H 0.43 -2.48 8.96 -92.71 -0.83 -3.31 16 40 H 0.11 -0.44 7.96 -2.39 -0.02 -0.46 16 41 H 0.40 -4.67 8.70 -74.06 -0.64 -5.32 16 42 H -0.27 1.03 7.11 99.48 0.71 1.74 16 43 H -0.30 -0.17 7.11 99.48 0.71 0.54 16 44 H 0.18 -2.17 5.88 -2.91 -0.02 -2.19 16 45 H 0.10 -0.45 7.92 -2.39 -0.02 -0.47 16 46 H 0.12 -1.21 8.14 -2.39 -0.02 -1.23 16 Total: 0.00 -26.46 385.79 -2.25 -28.71 By element: Atomic # 1 Polarization: -20.53 SS G_CDS: -1.49 Total: -22.03 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 4.81 Total: 11.44 kcal Atomic # 7 Polarization: 3.23 SS G_CDS: -3.50 Total: -0.27 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -4.16 Total: -13.66 kcal Atomic # 14 Polarization: -6.29 SS G_CDS: 2.10 Total: -4.20 kcal Total: -26.46 -2.25 -28.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16466198_9865296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.247 kcal (2) G-P(sol) polarization free energy of solvation -26.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds