Wall clock time and date at job start Sun Mar 7 2021 05:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99889 * 2 1 4 4 H 1.09005 * 112.85305 * 18.79745 * 3 2 1 5 5 C 1.53780 * 113.62034 * 149.99484 * 3 2 1 6 6 C 1.53776 * 87.08494 * 140.06207 * 5 3 2 7 7 H 1.08993 * 113.61581 * 89.20286 * 6 5 3 8 8 C 1.53005 * 113.61587 * 220.02425 * 6 5 3 9 9 C 1.52994 * 109.47160 * 183.47263 * 8 6 5 10 10 N 1.46497 * 109.47227 * 179.97438 * 9 8 6 11 11 C 1.34779 * 120.00186 * 179.97438 * 10 9 8 12 12 O 1.21694 * 119.99655 * 5.10082 * 11 10 9 13 13 C 1.46680 * 120.00095 * 185.10250 * 11 10 9 14 14 C 1.37869 * 126.23233 * 5.00531 * 13 11 10 15 15 C 1.39835 * 107.08246 * 180.02562 * 14 13 11 16 16 C 1.50707 * 126.06724 * 180.02562 * 15 14 13 17 17 O 1.42898 * 109.47078 * 244.97556 * 16 15 14 18 18 Si 1.86307 * 109.46894 * 4.97540 * 16 15 14 19 19 C 1.35448 * 107.86773 * 359.73639 * 15 14 13 20 20 N 1.35539 * 108.86825 * 0.43220 * 19 15 14 21 21 C 1.46498 * 125.67489 * 179.83061 * 20 19 15 22 22 C 1.53788 * 87.17210 * 334.61129 * 6 5 3 23 23 H 1.09001 * 109.46583 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47564 * 300.00612 * 1 2 3 25 25 H 1.09006 * 109.46544 * 60.00711 * 1 2 3 26 26 H 1.09009 * 113.61067 * 25.51396 * 5 3 2 27 27 H 1.08997 * 113.61579 * 254.61848 * 5 3 2 28 28 H 1.08996 * 109.47037 * 63.46932 * 8 6 5 29 29 H 1.09001 * 109.46917 * 303.47131 * 8 6 5 30 30 H 1.09001 * 109.47309 * 59.99433 * 9 8 6 31 31 H 1.09001 * 109.47097 * 299.99757 * 9 8 6 32 32 H 0.97001 * 119.99976 * 359.97438 * 10 9 8 33 33 H 1.07997 * 126.45714 * 359.96829 * 14 13 11 34 34 H 1.08999 * 109.47196 * 124.97057 * 16 15 14 35 35 H 0.96696 * 113.99824 * 179.97438 * 17 16 15 36 36 H 1.48495 * 109.99896 * 178.68334 * 18 16 15 37 37 H 1.48508 * 109.99717 * 300.00002 * 18 16 15 38 38 H 1.08002 * 125.56977 * 180.29855 * 19 15 14 39 39 H 1.09002 * 109.47095 * 264.15724 * 21 20 19 40 40 H 1.09004 * 109.47733 * 24.15894 * 21 20 19 41 41 H 1.09000 * 109.47185 * 144.15738 * 21 20 19 42 42 H 1.08998 * 113.61273 * 139.94025 * 22 6 5 43 43 H 1.08992 * 113.61319 * 270.83707 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 0.3237 5 6 3.3755 1.3721 0.7046 6 6 3.8220 2.3200 -0.4209 7 1 3.6221 3.3708 -0.2118 8 6 5.2538 2.0713 -0.8997 9 6 5.6280 3.1160 -1.9530 10 7 6.9991 2.8784 -2.4110 11 6 7.5462 3.6810 -3.3453 12 8 6.9370 4.6574 -3.7409 13 6 8.8757 3.3776 -3.8854 14 6 9.6343 2.2613 -3.6040 15 6 10.8237 2.3793 -4.3297 16 6 11.9610 1.3904 -4.3362 17 8 13.1218 1.9956 -3.7633 18 14 11.4856 -0.1092 -3.3381 19 6 10.7697 3.5369 -5.0308 20 7 9.5936 4.1559 -4.7649 21 6 9.1565 5.4369 -5.3254 22 6 2.7530 1.6532 -1.3029 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 3.9095 0.4218 0.7127 27 1 3.3380 1.8460 1.6854 28 1 5.3232 1.0748 -1.3357 29 1 5.9378 2.1465 -0.0544 30 1 5.5585 4.1126 -1.5170 31 1 4.9440 3.0408 -2.7984 32 1 7.5132 2.1433 -2.0418 33 1 9.3617 1.4492 -2.9463 34 1 12.1761 1.0908 -5.3619 35 1 13.8944 1.4150 -3.7345 36 1 12.5863 -1.1056 -3.3629 37 1 11.1897 0.2860 -1.9374 38 1 11.5391 3.9075 -5.6920 39 1 9.3945 6.2392 -4.6270 40 1 9.6695 5.6140 -6.2707 41 1 8.0801 5.4107 -5.4956 42 1 2.2138 2.3539 -1.9404 43 1 3.1165 0.7801 -1.8446 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:12:30 Heat of formation + Delta-G solvation = -39.184224 kcal Electronic energy + Delta-G solvation = -23316.430095 eV Core-core repulsion = 19751.118927 eV Total energy + Delta-G solvation = -3565.311168 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.53374 -40.64979 -40.08666 -37.79641 -37.51875 -36.04671 -34.10580 -32.21719 -30.35574 -28.50940 -27.68485 -26.69055 -25.90701 -25.34983 -23.36323 -22.56624 -21.11470 -20.56771 -20.32905 -18.76121 -18.41694 -17.63397 -17.09931 -16.93950 -16.69244 -16.45466 -16.21016 -15.93588 -15.69893 -15.44886 -15.25182 -14.95479 -14.67804 -14.38099 -13.99859 -13.63010 -13.49068 -13.36321 -13.34167 -13.29186 -13.22610 -12.96343 -12.45090 -12.38545 -12.25047 -11.90660 -11.71414 -11.53498 -11.23724 -11.07737 -10.38765 -10.35319 -10.22582 -9.74717 -9.23203 -4.82130 0.38869 1.38459 1.56815 1.57810 1.73085 2.05957 2.25641 2.32638 2.91755 3.50958 3.52372 3.65476 3.76275 3.83878 3.84755 3.92094 4.08382 4.10712 4.22081 4.30196 4.30959 4.32302 4.37341 4.48689 4.54268 4.59048 4.63927 4.66649 4.68780 4.75923 4.84190 4.86919 4.88959 4.99525 5.04619 5.13838 5.16489 5.29390 5.36591 5.48317 5.66290 5.89969 6.15401 6.32691 6.45014 6.71721 7.09798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.049 3.951 4 H 0.095 0.905 5 C -0.130 4.130 6 C -0.099 4.099 7 H 0.101 0.899 8 C -0.110 4.110 9 C 0.125 3.875 10 N -0.708 5.708 11 C 0.586 3.414 12 O -0.584 6.584 13 C -0.075 4.075 14 C -0.127 4.127 15 C -0.183 4.183 16 C -0.050 4.050 17 O -0.562 6.562 18 Si 0.765 3.235 19 C 0.048 3.952 20 N -0.416 5.416 21 C 0.066 3.934 22 C -0.152 4.152 23 H 0.091 0.909 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.415 0.585 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.392 0.608 36 H -0.291 1.291 37 H -0.294 1.294 38 H 0.190 0.810 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.578 -2.595 -0.797 2.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C -0.009 4.009 4 H 0.113 0.887 5 C -0.167 4.167 6 C -0.118 4.118 7 H 0.119 0.881 8 C -0.148 4.148 9 C 0.002 3.998 10 N -0.360 5.360 11 C 0.375 3.625 12 O -0.467 6.467 13 C -0.188 4.188 14 C -0.153 4.153 15 C -0.188 4.188 16 C -0.159 4.159 17 O -0.372 6.372 18 Si 0.671 3.329 19 C -0.089 4.089 20 N -0.089 5.089 21 C -0.074 4.074 22 C -0.190 4.190 23 H 0.109 0.891 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.185 0.815 34 H 0.107 0.893 35 H 0.242 0.758 36 H -0.219 1.219 37 H -0.221 1.221 38 H 0.207 0.793 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.319 -1.734 -0.472 2.229 hybrid contribution 1.174 0.399 0.190 1.254 sum -0.145 -1.335 -0.282 1.372 Atomic orbital electron populations 1.22921 0.80172 1.03520 1.00582 1.87908 1.20928 1.28576 1.94761 1.23954 0.94448 0.84930 0.97535 0.88738 1.23259 0.94844 1.00247 0.98357 1.22181 0.93558 0.99672 0.96348 0.88073 1.21681 0.96283 0.98770 0.98019 1.21393 0.81075 0.99602 0.97709 1.45598 1.16313 1.33289 1.40775 1.17150 0.83969 0.82194 0.79218 1.90779 1.64594 1.29360 1.61941 1.20025 0.96382 0.96830 1.05540 1.21424 0.94126 0.97744 1.02052 1.18893 0.96564 0.98760 1.04615 1.24266 0.85359 1.02468 1.03805 1.86559 1.22246 1.43855 1.84522 0.94154 0.86136 0.74458 0.78199 1.22299 0.88923 0.94347 1.03332 1.44084 1.14162 1.17686 1.32934 1.22357 1.03002 0.81656 1.00427 1.23626 0.97664 1.00791 0.96923 0.89093 0.93239 0.93492 0.89341 0.90254 0.89943 0.89793 0.92135 0.91954 0.74742 0.81516 0.89268 0.75850 1.21860 1.22134 0.79252 0.90570 0.86915 0.89563 0.91060 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 2 O -0.40 -1.67 10.72 -148.98 -1.60 -3.27 16 3 C 0.05 -0.01 4.31 31.18 0.13 0.12 16 4 H 0.09 -0.22 7.87 -2.38 -0.02 -0.24 16 5 C -0.13 0.31 7.47 31.12 0.23 0.54 16 6 C -0.10 0.39 3.64 -10.27 -0.04 0.36 16 7 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 8 C -0.11 0.56 5.15 30.59 0.16 0.72 16 9 C 0.13 -0.08 5.68 86.38 0.49 0.41 16 10 N -0.71 -0.42 5.53 -467.09 -2.58 -3.00 16 11 C 0.59 4.29 7.77 86.45 0.67 4.96 16 12 O -0.58 -8.06 14.78 -4.33 -0.06 -8.12 16 13 C -0.08 -0.44 6.89 40.35 0.28 -0.16 16 14 C -0.13 -0.29 8.83 22.57 0.20 -0.09 16 15 C -0.18 -0.50 5.43 -20.12 -0.11 -0.61 16 16 C -0.05 0.03 2.99 71.24 0.21 0.24 16 17 O -0.56 -1.26 12.86 -148.98 -1.92 -3.17 16 18 Si 0.77 -1.70 30.66 68.60 2.10 0.40 16 19 C 0.05 0.12 11.28 83.48 0.94 1.06 16 20 N -0.42 -1.95 3.16 -534.31 -1.69 -3.64 16 21 C 0.07 0.09 10.49 127.77 1.34 1.43 16 22 C -0.15 0.25 7.48 31.18 0.23 0.48 16 23 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 24 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.05 -0.09 8.14 -2.38 -0.02 -0.11 16 26 H 0.09 -0.11 8.10 -2.38 -0.02 -0.13 16 27 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.08 -0.49 7.87 -2.39 -0.02 -0.51 16 29 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.42 -1.93 7.42 -92.71 -0.69 -2.62 16 33 H 0.17 -0.55 5.83 -2.91 -0.02 -0.57 16 34 H 0.09 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.39 -2.22 8.74 -74.06 -0.65 -2.87 16 36 H -0.29 -0.63 7.11 99.48 0.71 0.08 16 37 H -0.29 -1.26 7.11 99.48 0.71 -0.55 16 38 H 0.19 -0.46 8.06 -2.91 -0.02 -0.49 16 39 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.11 -0.53 8.12 -2.38 -0.02 -0.55 16 41 H 0.09 0.42 6.54 -2.39 -0.02 0.41 16 42 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.09 -0.02 7.92 -2.39 -0.02 -0.04 16 Total: 0.00 -20.34 356.01 -0.06 -20.40 By element: Atomic # 1 Polarization: -9.98 SS G_CDS: -0.29 Total: -10.26 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 5.97 Total: 10.67 kcal Atomic # 7 Polarization: -2.37 SS G_CDS: -4.27 Total: -6.64 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -3.58 Total: -14.57 kcal Atomic # 14 Polarization: -1.70 SS G_CDS: 2.10 Total: 0.40 kcal Total: -20.34 -0.06 -20.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.786 kcal (2) G-P(sol) polarization free energy of solvation -20.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds