Wall clock time and date at job start Sun Mar 7 2021 05:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99803 * 2 1 4 4 H 1.09000 * 112.85304 * 18.79869 * 3 2 1 5 5 C 1.53780 * 113.61175 * 149.99829 * 3 2 1 6 6 C 1.53783 * 87.08108 * 140.06065 * 5 3 2 7 7 H 1.09007 * 113.61480 * 89.19826 * 6 5 3 8 8 C 1.52994 * 113.61695 * 220.01433 * 6 5 3 9 9 C 1.53006 * 109.47336 * 183.46915 * 8 6 5 10 10 N 1.46500 * 109.46916 * 179.97438 * 9 8 6 11 11 C 1.34776 * 119.99510 * 180.02562 * 10 9 8 12 12 O 1.21693 * 120.00537 * 5.06298 * 11 10 9 13 13 C 1.46686 * 119.99903 * 184.79257 * 11 10 9 14 14 C 1.37870 * 126.22949 * 354.90580 * 13 11 10 15 15 C 1.39834 * 107.08410 * 179.97438 * 14 13 11 16 16 C 1.35454 * 107.86489 * 0.02562 * 15 14 13 17 17 C 1.50699 * 125.56676 * 179.97438 * 16 15 14 18 18 O 1.42897 * 109.47374 * 150.02230 * 17 16 15 19 19 Si 1.86300 * 109.46961 * 30.02363 * 17 16 15 20 20 N 1.35536 * 108.87235 * 359.76768 * 16 15 14 21 21 C 1.46500 * 125.68319 * 180.23227 * 20 16 15 22 22 C 1.53777 * 87.17358 * 334.60992 * 6 5 3 23 23 H 1.08997 * 109.47410 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47374 * 300.00177 * 1 2 3 25 25 H 1.09007 * 109.46993 * 60.00490 * 1 2 3 26 26 H 1.09000 * 113.61556 * 25.51438 * 5 3 2 27 27 H 1.09003 * 113.61631 * 254.61181 * 5 3 2 28 28 H 1.09004 * 109.46673 * 63.47505 * 8 6 5 29 29 H 1.09000 * 109.47592 * 303.47752 * 8 6 5 30 30 H 1.09004 * 109.46758 * 60.00641 * 9 8 6 31 31 H 1.08994 * 109.47205 * 300.00525 * 9 8 6 32 32 H 0.97002 * 120.00378 * 0.02562 * 10 9 8 33 33 H 1.08004 * 126.46114 * 0.02562 * 14 13 11 34 34 H 1.08001 * 126.06786 * 179.97438 * 15 14 13 35 35 H 1.08998 * 109.46962 * 270.02424 * 17 16 15 36 36 H 0.96696 * 114.00413 * 300.00257 * 18 17 16 37 37 H 1.48502 * 110.00176 * 58.68119 * 19 17 16 38 38 H 1.48507 * 109.99794 * 180.02562 * 19 17 16 39 39 H 1.08997 * 109.46941 * 276.02169 * 21 20 16 40 40 H 1.09005 * 109.46683 * 36.01482 * 21 20 16 41 41 H 1.08991 * 109.47188 * 156.01886 * 21 20 16 42 42 H 1.09001 * 113.61712 * 139.94005 * 22 6 5 43 43 H 1.08999 * 113.61501 * 270.83847 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 0.3237 5 6 3.3755 1.3719 0.7046 6 6 3.8220 2.3198 -0.4210 7 1 3.6222 3.3708 -0.2118 8 6 5.2537 2.0713 -0.8998 9 6 5.6279 3.1160 -1.9531 10 7 6.9991 2.8783 -2.4110 11 6 7.5464 3.6815 -3.3446 12 8 6.9373 4.6580 -3.7401 13 6 8.8790 3.3821 -3.8798 14 6 9.7216 2.3777 -3.4532 15 6 10.8791 2.4532 -4.2340 16 6 10.7270 3.4800 -5.1043 17 6 11.7394 3.9149 -6.1325 18 8 11.0632 4.4785 -7.2581 19 14 12.7384 2.4416 -6.6820 20 7 9.5138 4.0496 -4.9026 21 6 8.9699 5.1881 -5.6471 22 6 2.7531 1.6532 -1.3029 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 3.9094 0.4216 0.7126 27 1 3.3381 1.8458 1.6855 28 1 5.3231 1.0747 -1.3358 29 1 5.9378 2.1464 -0.0545 30 1 5.5585 4.1126 -1.5171 31 1 4.9439 3.0408 -2.7984 32 1 7.5130 2.1428 -2.0423 33 1 9.5244 1.6660 -2.6650 34 1 11.7417 1.8080 -4.1564 35 1 12.4028 4.6614 -5.6960 36 1 10.4545 3.8687 -7.6971 37 1 11.8417 1.4030 -7.2500 38 1 13.7409 2.8573 -7.6957 39 1 9.3393 6.1166 -5.2120 40 1 9.2845 5.1246 -6.6888 41 1 7.8814 5.1699 -5.5945 42 1 2.2138 2.3539 -1.9404 43 1 3.1164 0.7800 -1.8447 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:12:34 Heat of formation + Delta-G solvation = -39.011849 kcal Electronic energy + Delta-G solvation = -23392.551331 eV Core-core repulsion = 19827.247638 eV Total energy + Delta-G solvation = -3565.303693 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.60147 -40.68815 -40.15245 -37.96599 -37.55547 -36.07443 -33.85510 -32.32519 -30.88375 -27.86005 -27.52971 -27.01760 -26.64260 -25.10114 -23.10088 -22.61108 -21.44970 -20.64763 -20.35975 -18.90012 -18.22106 -17.63189 -17.13099 -17.07034 -16.63149 -16.44455 -16.22037 -15.97230 -15.78988 -15.38512 -15.27840 -14.87885 -14.77050 -14.42569 -14.25369 -13.82985 -13.63486 -13.46044 -13.37380 -13.23938 -12.99849 -12.94487 -12.42118 -12.36337 -12.27124 -11.94906 -11.73754 -11.56201 -11.27430 -11.17411 -10.81983 -10.41029 -10.24505 -9.75042 -9.10258 -4.86738 0.34700 1.16913 1.56352 1.73677 1.75795 2.01958 2.30969 2.34800 2.89714 3.13948 3.48686 3.56361 3.62924 3.72498 3.81733 3.89799 3.95886 4.08524 4.26556 4.27520 4.28163 4.36025 4.46493 4.48681 4.52201 4.54717 4.61519 4.64414 4.68045 4.82052 4.84344 4.86394 4.97252 5.01994 5.09266 5.12310 5.18296 5.27122 5.35149 5.45912 5.72146 5.98149 6.12741 6.29021 6.30455 6.46447 7.09774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.049 3.951 4 H 0.095 0.905 5 C -0.128 4.128 6 C -0.099 4.099 7 H 0.101 0.899 8 C -0.107 4.107 9 C 0.125 3.875 10 N -0.705 5.705 11 C 0.582 3.418 12 O -0.591 6.591 13 C -0.087 4.087 14 C -0.125 4.125 15 C -0.201 4.201 16 C 0.006 3.994 17 C -0.068 4.068 18 O -0.547 6.547 19 Si 0.819 3.181 20 N -0.408 5.408 21 C 0.060 3.940 22 C -0.154 4.154 23 H 0.091 0.909 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.418 0.582 33 H 0.177 0.823 34 H 0.186 0.814 35 H 0.131 0.869 36 H 0.386 0.614 37 H -0.290 1.290 38 H -0.297 1.297 39 H 0.068 0.932 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 -3.891 3.482 5.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C -0.009 4.009 4 H 0.113 0.887 5 C -0.165 4.165 6 C -0.118 4.118 7 H 0.120 0.880 8 C -0.145 4.145 9 C 0.002 3.998 10 N -0.357 5.357 11 C 0.371 3.629 12 O -0.474 6.474 13 C -0.200 4.200 14 C -0.151 4.151 15 C -0.224 4.224 16 C -0.112 4.112 17 C -0.175 4.175 18 O -0.356 6.356 19 Si 0.721 3.279 20 N -0.082 5.082 21 C -0.081 4.081 22 C -0.192 4.192 23 H 0.109 0.891 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.255 0.745 33 H 0.194 0.806 34 H 0.203 0.797 35 H 0.149 0.851 36 H 0.236 0.764 37 H -0.217 1.217 38 H -0.225 1.225 39 H 0.086 0.914 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.809 -3.049 2.534 4.358 hybrid contribution -1.404 0.589 -0.671 1.664 sum 0.405 -2.461 1.863 3.113 Atomic orbital electron populations 1.22923 0.80157 1.03538 1.00586 1.87907 1.20947 1.28584 1.94757 1.23958 0.94536 0.84941 0.97443 0.88696 1.23252 0.94689 1.00229 0.98373 1.22189 0.93562 0.99711 0.96342 0.88048 1.21663 0.96325 0.98499 0.98022 1.21378 0.81183 0.99693 0.97574 1.45547 1.16126 1.33144 1.40881 1.17286 0.84173 0.82103 0.79289 1.90770 1.64993 1.29576 1.62049 1.20242 0.96924 1.02788 1.00012 1.21743 0.93442 0.98004 1.01940 1.21026 1.01354 1.00797 0.99228 1.21488 0.88038 0.98543 1.03144 1.25296 0.96430 1.11050 0.84772 1.86560 1.61162 1.43056 1.44774 0.93265 0.77682 0.72539 0.84402 1.43918 1.13465 1.24777 1.26011 1.22464 1.00803 0.86716 0.98143 1.23633 0.97825 1.00723 0.97006 0.89071 0.93147 0.93580 0.89284 0.90051 0.90194 0.89357 0.92166 0.92524 0.74462 0.80601 0.79697 0.85138 0.76416 1.21674 1.22489 0.91359 0.87028 0.89912 0.91240 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.40 -1.74 10.72 -148.98 -1.60 -3.33 16 3 C 0.05 0.00 4.31 31.18 0.13 0.13 16 4 H 0.10 -0.22 7.87 -2.39 -0.02 -0.23 16 5 C -0.13 0.33 7.47 31.12 0.23 0.56 16 6 C -0.10 0.39 3.64 -10.27 -0.04 0.35 16 7 H 0.10 -0.47 8.14 -2.38 -0.02 -0.49 16 8 C -0.11 0.57 5.15 30.59 0.16 0.73 16 9 C 0.13 -0.04 5.68 86.38 0.49 0.45 16 10 N -0.71 -0.19 5.54 -467.06 -2.59 -2.78 16 11 C 0.58 4.54 7.77 86.45 0.67 5.21 16 12 O -0.59 -9.12 14.63 -4.33 -0.06 -9.18 16 13 C -0.09 -0.48 6.88 40.35 0.28 -0.20 16 14 C -0.12 0.09 10.35 22.57 0.23 0.33 16 15 C -0.20 0.40 9.37 22.01 0.21 0.61 16 16 C 0.01 0.01 6.15 41.34 0.25 0.26 16 17 C -0.07 0.11 2.99 71.24 0.21 0.32 16 18 O -0.55 -0.45 10.12 -148.98 -1.51 -1.96 16 19 Si 0.82 -3.54 31.10 68.60 2.13 -1.41 16 20 N -0.41 -2.35 3.16 -519.71 -1.64 -3.99 16 21 C 0.06 0.33 10.21 127.77 1.30 1.64 16 22 C -0.15 0.18 7.48 31.18 0.23 0.41 16 23 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 24 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.05 -0.08 8.14 -2.38 -0.02 -0.10 16 26 H 0.09 -0.14 8.10 -2.39 -0.02 -0.16 16 27 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.08 -0.47 7.88 -2.39 -0.02 -0.49 16 29 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.42 -2.50 7.37 -92.71 -0.68 -3.18 16 33 H 0.18 -1.38 7.45 -2.91 -0.02 -1.40 16 34 H 0.19 -1.72 6.85 -2.91 -0.02 -1.74 16 35 H 0.13 -0.42 7.96 -2.39 -0.02 -0.44 16 36 H 0.39 -1.44 8.29 -74.06 -0.61 -2.06 16 37 H -0.29 -0.36 7.11 99.48 0.71 0.35 16 38 H -0.30 -0.82 7.11 99.48 0.71 -0.12 16 39 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.11 0.22 5.25 -2.38 -0.01 0.21 16 41 H 0.08 0.76 6.12 -2.39 -0.01 0.75 16 42 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.08 0.04 7.92 -2.39 -0.02 0.02 16 Total: 0.00 -20.65 350.25 0.09 -20.55 By element: Atomic # 1 Polarization: -9.69 SS G_CDS: -0.24 Total: -9.93 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 5.60 Total: 12.03 kcal Atomic # 7 Polarization: -2.54 SS G_CDS: -4.23 Total: -6.77 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -3.17 Total: -14.47 kcal Atomic # 14 Polarization: -3.54 SS G_CDS: 2.13 Total: -1.41 kcal Total: -20.65 0.09 -20.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.457 kcal (2) G-P(sol) polarization free energy of solvation -20.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds