Wall clock time and date at job start Sun Mar 7 2021 05:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00266 * 2 1 4 4 H 1.09006 * 112.84814 * 18.80376 * 3 2 1 5 5 C 1.53778 * 113.61626 * 149.99468 * 3 2 1 6 6 C 1.53782 * 87.08068 * 140.06852 * 5 3 2 7 7 H 1.08995 * 113.61620 * 89.20110 * 6 5 3 8 8 C 1.52998 * 113.61625 * 220.02295 * 6 5 3 9 9 C 1.52996 * 109.47199 * 184.99725 * 8 6 5 10 10 N 1.46507 * 109.47093 * 179.97438 * 9 8 6 11 11 C 1.34778 * 119.99755 * 179.97438 * 10 9 8 12 12 O 1.21693 * 120.00315 * 0.02562 * 11 10 9 13 13 C 1.46682 * 119.99680 * 180.02562 * 11 10 9 14 14 C 1.37867 * 126.22827 * 180.02562 * 13 11 10 15 15 C 1.50700 * 126.46180 * 359.97438 * 14 13 11 16 16 C 1.39840 * 107.08428 * 179.97438 * 14 13 11 17 17 C 1.50697 * 126.06904 * 179.97438 * 16 14 13 18 18 O 1.42902 * 109.47324 * 308.96760 * 17 16 14 19 19 Si 1.86294 * 109.47014 * 68.97012 * 17 16 14 20 20 C 1.35455 * 107.86341 * 0.26559 * 16 14 13 21 21 C 1.50698 * 125.56643 * 179.73687 * 20 16 14 22 22 N 1.35534 * 108.86994 * 359.56410 * 20 16 14 23 23 C 1.53773 * 113.69478 * 247.53793 * 3 2 1 24 24 H 1.08992 * 109.46966 * 299.99911 * 1 2 3 25 25 H 1.09000 * 109.46877 * 59.99617 * 1 2 3 26 26 H 1.08998 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.09004 * 113.60817 * 25.52463 * 5 3 2 28 28 H 1.08991 * 113.69781 * 254.62700 * 5 3 2 29 29 H 1.09009 * 109.47366 * 64.99985 * 8 6 5 30 30 H 1.09000 * 109.47314 * 304.99991 * 8 6 5 31 31 H 1.09000 * 109.47236 * 60.00194 * 9 8 6 32 32 H 1.08995 * 109.47483 * 299.99954 * 9 8 6 33 33 H 0.96995 * 120.00126 * 0.02562 * 10 9 8 34 34 H 1.09001 * 109.47256 * 269.97812 * 15 14 13 35 35 H 1.08999 * 109.46729 * 29.98389 * 15 14 13 36 36 H 1.09005 * 109.47023 * 149.97952 * 15 14 13 37 37 H 1.09002 * 109.47189 * 188.96732 * 17 16 14 38 38 H 0.96695 * 113.99770 * 179.97438 * 18 17 16 39 39 H 1.48498 * 110.00313 * 293.90735 * 19 17 16 40 40 H 1.48499 * 110.00173 * 55.22701 * 19 17 16 41 41 H 1.09001 * 109.47149 * 92.83143 * 21 20 16 42 42 H 1.08993 * 109.47193 * 212.83578 * 21 20 16 43 43 H 1.09002 * 109.47069 * 332.83637 * 21 20 16 44 44 H 0.97001 * 125.68185 * 180.17173 * 22 20 16 45 45 H 1.09006 * 113.61921 * 105.45410 * 23 3 2 46 46 H 1.09003 * 113.61315 * 334.55521 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3138 2.0789 0.3238 5 6 3.3755 1.3718 0.7046 6 6 3.8221 2.3199 -0.4209 7 1 3.6222 3.3707 -0.2117 8 6 5.2538 2.0713 -0.8998 9 6 5.6412 3.1388 -1.9250 10 7 7.0124 2.9011 -2.3831 11 6 7.5702 3.7222 -3.2947 12 8 6.9351 4.6613 -3.7370 13 6 8.9428 3.4839 -3.7537 14 6 9.6361 4.2385 -4.6760 15 6 9.1269 5.4585 -5.3994 16 6 10.9010 3.6584 -4.8138 17 6 12.0056 4.1428 -5.7173 18 8 11.4957 4.3200 -7.0404 19 14 12.6605 5.7669 -5.0815 20 6 10.9550 2.5800 -3.9959 21 6 12.1372 1.6592 -3.8363 22 7 9.7734 2.4665 -3.3417 23 6 2.7532 1.6511 -1.3013 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.9094 0.4215 0.7125 28 1 3.3396 1.8453 1.6856 29 1 5.3169 1.0853 -1.3604 30 1 5.9347 2.1195 -0.0500 31 1 5.5782 4.1247 -1.4645 32 1 4.9604 3.0906 -2.7748 33 1 7.5185 2.1523 -2.0308 34 1 8.6481 5.1553 -6.3306 35 1 8.4033 5.9778 -4.7710 36 1 9.9610 6.1247 -5.6199 37 1 12.8104 3.4079 -5.7335 38 1 12.1535 4.6315 -7.6770 39 1 11.6142 6.8148 -5.1921 40 1 13.0880 5.6233 -3.6667 41 1 12.7554 2.0021 -3.0066 42 1 11.7852 0.6479 -3.6334 43 1 12.7262 1.6619 -4.7534 44 1 9.5489 1.7802 -2.6940 45 1 2.2133 2.3504 -1.9398 46 1 3.1169 0.7771 -1.8417 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_12297754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:12:41 Heat of formation + Delta-G solvation = -57.552176 kcal Electronic energy + Delta-G solvation = -25368.452243 eV Core-core repulsion = 21646.806962 eV Total energy + Delta-G solvation = -3721.645281 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 309.177 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.77790 -40.76476 -40.24322 -37.62691 -37.61162 -36.17182 -33.95690 -33.30139 -31.72909 -29.32549 -28.05655 -27.47851 -26.78603 -26.51995 -25.03669 -22.71884 -22.54071 -20.91186 -20.50373 -20.07698 -19.42329 -18.20957 -17.69240 -17.15526 -17.01746 -16.79303 -16.54652 -16.19144 -16.05091 -15.60366 -15.42570 -15.16637 -14.77200 -14.75003 -14.44307 -14.20810 -13.95722 -13.68602 -13.64410 -13.51601 -13.43070 -13.28913 -13.23825 -13.06430 -12.69414 -12.48042 -12.43890 -12.33241 -11.83866 -11.79593 -11.58352 -11.31727 -11.11318 -10.55245 -10.45628 -10.38092 -9.60136 -9.11147 -4.92840 0.21698 1.14924 1.57662 1.72185 1.82761 2.01037 2.09012 2.17717 2.85047 3.41720 3.55537 3.56627 3.68165 3.76186 3.79285 3.83488 3.95378 4.02028 4.15947 4.19320 4.21363 4.32338 4.41777 4.43536 4.49242 4.49576 4.55803 4.57294 4.67949 4.72189 4.77486 4.78957 4.81378 4.85840 4.90053 4.93127 4.96839 5.04706 5.08643 5.15874 5.20463 5.23860 5.39039 5.55058 5.72056 6.24851 6.26266 6.41567 6.96559 7.05785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.050 3.950 4 H 0.096 0.904 5 C -0.128 4.128 6 C -0.100 4.100 7 H 0.102 0.898 8 C -0.107 4.107 9 C 0.122 3.878 10 N -0.717 5.717 11 C 0.586 3.414 12 O -0.568 6.568 13 C -0.083 4.083 14 C -0.078 4.078 15 C -0.087 4.087 16 C -0.202 4.202 17 C -0.026 4.026 18 O -0.564 6.564 19 Si 0.751 3.249 20 C 0.091 3.909 21 C -0.097 4.097 22 N -0.519 5.519 23 C -0.154 4.154 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.410 0.590 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.400 0.600 39 H -0.301 1.301 40 H -0.303 1.303 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.434 0.566 45 H 0.069 0.931 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 -4.917 2.429 7.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C -0.008 4.008 4 H 0.114 0.886 5 C -0.165 4.165 6 C -0.119 4.119 7 H 0.120 0.880 8 C -0.144 4.144 9 C -0.001 4.001 10 N -0.369 5.369 11 C 0.375 3.625 12 O -0.447 6.447 13 C -0.195 4.195 14 C -0.086 4.086 15 C -0.143 4.143 16 C -0.207 4.207 17 C -0.136 4.136 18 O -0.373 6.373 19 Si 0.659 3.341 20 C -0.029 4.029 21 C -0.154 4.154 22 N -0.118 5.118 23 C -0.192 4.192 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.246 0.754 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.250 0.750 39 H -0.230 1.230 40 H -0.231 1.231 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.275 0.725 45 H 0.088 0.912 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.029 -4.102 3.129 6.546 hybrid contribution -1.040 -0.485 0.566 1.279 sum 2.989 -4.587 3.694 6.605 Atomic orbital electron populations 1.22928 0.80089 1.03577 1.00622 1.87905 1.21013 1.28533 1.94759 1.23908 0.94509 0.85010 0.97348 0.88609 1.23251 0.94765 1.00155 0.98359 1.22192 0.93453 0.99777 0.96450 0.88004 1.21663 0.96438 0.98174 0.98167 1.21414 0.81198 0.99701 0.97756 1.45749 1.16570 1.31392 1.43188 1.17167 0.84340 0.82095 0.78944 1.90813 1.63246 1.31944 1.58702 1.19958 0.93259 0.97901 1.08385 1.20034 0.94218 0.97659 0.96721 1.20347 1.00556 0.94175 0.99263 1.18909 0.96035 0.99697 1.06097 1.23953 0.95586 1.08794 0.85287 1.86489 1.42003 1.90234 1.18599 0.96011 0.82212 0.74840 0.81021 1.20853 0.89014 0.97570 0.95443 1.20719 0.92173 0.97157 1.05327 1.41728 1.11066 1.24009 1.34977 1.23607 0.97813 1.00705 0.97063 0.93111 0.93559 0.89024 0.89336 0.90021 0.90295 0.89490 0.92005 0.92373 0.75418 0.91636 0.92361 0.91610 0.88060 0.74963 1.23011 1.23132 0.88824 0.88923 0.88011 0.72477 0.91203 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.40 -1.85 10.72 -148.98 -1.60 -3.45 16 3 C 0.05 0.01 4.31 31.12 0.13 0.15 16 4 H 0.10 -0.18 7.87 -2.38 -0.02 -0.20 16 5 C -0.13 0.29 7.47 31.12 0.23 0.52 16 6 C -0.10 0.34 3.65 -10.27 -0.04 0.30 16 7 H 0.10 -0.41 8.13 -2.39 -0.02 -0.43 16 8 C -0.11 0.51 5.16 30.59 0.16 0.67 16 9 C 0.12 0.08 5.67 86.38 0.49 0.57 16 10 N -0.72 -0.89 5.55 -467.07 -2.59 -3.48 16 11 C 0.59 5.88 7.79 86.45 0.67 6.56 16 12 O -0.57 -10.46 14.80 -4.33 -0.06 -10.52 16 13 C -0.08 -0.70 7.06 40.35 0.28 -0.42 16 14 C -0.08 -0.93 5.88 -19.56 -0.12 -1.04 16 15 C -0.09 -1.24 9.14 71.24 0.65 -0.59 16 16 C -0.20 -1.27 4.43 -20.12 -0.09 -1.36 16 17 C -0.03 -0.02 2.78 71.23 0.20 0.18 16 18 O -0.56 -1.09 12.34 -148.98 -1.84 -2.93 16 19 Si 0.75 1.02 31.50 68.60 2.16 3.18 16 20 C 0.09 0.05 7.13 41.34 0.29 0.35 16 21 C -0.10 0.78 10.16 71.24 0.72 1.50 16 22 N -0.52 0.09 5.99 -171.93 -1.03 -0.94 16 23 C -0.15 0.09 7.47 31.12 0.23 0.32 16 24 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 25 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.09 -0.12 8.10 -2.38 -0.02 -0.14 16 28 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.08 -0.42 7.84 -2.38 -0.02 -0.44 16 30 H 0.09 -0.61 8.14 -2.39 -0.02 -0.62 16 31 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.41 -2.41 7.60 -92.71 -0.70 -3.11 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.02 6.48 -2.39 -0.02 1.00 16 36 H 0.07 0.88 5.01 -2.38 -0.01 0.87 16 37 H 0.10 -0.61 6.47 -2.39 -0.02 -0.62 16 38 H 0.40 -3.51 8.74 -74.06 -0.65 -4.16 16 39 H -0.30 -3.11 5.76 99.48 0.57 -2.54 16 40 H -0.30 -2.33 7.11 99.48 0.71 -1.62 16 41 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H 0.10 -0.98 6.87 -2.39 -0.02 -1.00 16 44 H 0.43 -3.59 8.19 -92.71 -0.76 -4.35 16 45 H 0.07 -0.03 8.14 -2.38 -0.02 -0.05 16 46 H 0.08 0.08 7.90 -2.39 -0.02 0.06 16 Total: 0.00 -26.90 371.46 -1.10 -28.00 By element: Atomic # 1 Polarization: -17.57 SS G_CDS: -1.20 Total: -18.77 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 5.06 Total: 8.92 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -3.62 Total: -4.43 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -3.50 Total: -16.90 kcal Atomic # 14 Polarization: 1.02 SS G_CDS: 2.16 Total: 3.18 kcal Total: -26.90 -1.10 -28.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_12297754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.551 kcal (2) G-P(sol) polarization free energy of solvation -26.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds