Wall clock time and date at job start Sun Mar 7 2021 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00120 * 2 1 4 4 H 1.08993 * 112.85030 * 18.79933 * 3 2 1 5 5 C 1.53776 * 113.61538 * 150.00571 * 3 2 1 6 6 C 1.53785 * 87.08251 * 139.97904 * 5 3 2 7 7 H 1.09000 * 113.61524 * 89.19887 * 6 5 3 8 8 C 1.53002 * 113.61065 * 220.01538 * 6 5 3 9 9 C 1.53005 * 109.46647 * 183.46890 * 8 6 5 10 10 N 1.46500 * 109.46839 * 180.02562 * 9 8 6 11 11 C 1.34774 * 120.00029 * 179.97438 * 10 9 8 12 12 O 1.21557 * 119.99708 * 0.02562 * 11 10 9 13 13 C 1.47848 * 120.00206 * 180.02562 * 11 10 9 14 14 C 1.39539 * 120.13733 * 0.02562 * 13 11 10 15 15 C 1.38082 * 119.84073 * 180.02562 * 14 13 11 16 16 Br 1.89096 * 119.93696 * 179.97438 * 15 14 13 17 17 C 1.38420 * 120.12257 * 359.97438 * 15 14 13 18 18 C 1.38362 * 120.28238 * 0.02562 * 17 15 14 19 19 C 1.50707 * 119.91844 * 180.02562 * 18 17 15 20 20 O 1.42903 * 109.46442 * 244.99652 * 19 18 17 21 21 Si 1.86293 * 109.47256 * 4.99218 * 19 18 17 22 22 C 1.37939 * 120.15963 * 0.27097 * 18 17 15 23 23 C 1.53780 * 87.17068 * 334.60507 * 6 5 3 24 24 H 1.09001 * 109.46883 * 299.99819 * 1 2 3 25 25 H 1.08995 * 109.47299 * 60.00229 * 1 2 3 26 26 H 1.08999 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.09005 * 113.61695 * 25.42761 * 5 3 2 28 28 H 1.09000 * 113.68665 * 254.54107 * 5 3 2 29 29 H 1.09004 * 109.47268 * 63.47313 * 8 6 5 30 30 H 1.09001 * 109.47574 * 303.46782 * 8 6 5 31 31 H 1.08995 * 109.46774 * 60.00338 * 9 8 6 32 32 H 1.09001 * 109.47045 * 300.00216 * 9 8 6 33 33 H 0.96999 * 120.00296 * 0.02562 * 10 9 8 34 34 H 1.08004 * 120.08332 * 0.04090 * 14 13 11 35 35 H 1.08001 * 119.85997 * 180.02562 * 17 15 14 36 36 H 1.08999 * 109.47345 * 124.99722 * 19 18 17 37 37 H 0.96700 * 114.00311 * 60.00230 * 20 19 18 38 38 H 1.48501 * 109.99918 * 58.68485 * 21 19 18 39 39 H 1.48506 * 109.99973 * 180.02562 * 21 19 18 40 40 H 1.08003 * 120.06291 * 179.71270 * 22 18 17 41 41 H 1.09003 * 113.61009 * 139.93546 * 23 6 5 42 42 H 1.08994 * 113.61808 * 270.84079 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0789 0.3237 5 6 3.3756 1.3718 0.7044 6 6 3.8227 2.3181 -0.4224 7 1 3.6236 3.3694 -0.2145 8 6 5.2543 2.0679 -0.9008 9 6 5.6291 3.1110 -1.9555 10 7 6.9996 2.8711 -2.4141 11 6 7.5471 3.6720 -3.3496 12 8 6.9039 4.5937 -3.8125 13 6 8.9301 3.4296 -3.8129 14 6 9.6709 2.3720 -3.2838 15 6 10.9621 2.1515 -3.7205 16 35 11.9687 0.7195 -3.0049 17 6 11.5211 2.9766 -4.6811 18 6 10.7911 4.0268 -5.2091 19 6 11.4075 4.9197 -6.2550 20 8 11.5451 6.2421 -5.7311 21 14 13.0854 4.2600 -6.7242 22 6 9.5024 4.2614 -4.7769 23 6 2.7533 1.6510 -1.3034 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.9089 0.4212 0.7136 28 1 3.3398 1.8466 1.6849 29 1 5.3230 1.0707 -1.3357 30 1 5.9384 2.1437 -0.0557 31 1 5.5604 4.1081 -1.5207 32 1 4.9450 3.0352 -2.8007 33 1 7.5128 2.1354 -2.0450 34 1 9.2353 1.7273 -2.5348 35 1 12.5312 2.8000 -5.0199 36 1 10.7667 4.9430 -7.1364 37 1 12.1038 6.2971 -4.9437 38 1 12.9596 2.8734 -7.2408 39 1 13.7041 5.1322 -7.7547 40 1 8.9356 5.0844 -5.1868 41 1 2.2144 2.3513 -1.9417 42 1 3.1160 0.7769 -1.8441 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:13:21 Heat of formation + Delta-G solvation = -58.194565 kcal Electronic energy + Delta-G solvation = -24252.981095 eV Core-core repulsion = 20439.764964 eV Total energy + Delta-G solvation = -3813.216131 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.061 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60281 -40.57659 -39.96000 -37.69972 -37.56875 -36.10006 -33.62421 -33.41372 -31.46087 -30.46161 -27.78731 -27.05587 -26.73836 -26.17918 -24.35331 -22.87547 -22.56618 -21.52384 -20.47401 -19.19907 -17.94183 -17.80511 -17.45884 -17.28315 -16.81809 -16.65065 -16.31624 -16.23108 -16.03995 -15.68346 -15.59083 -15.00471 -14.97138 -14.82027 -14.31302 -14.11301 -13.66870 -13.46415 -13.37905 -13.29229 -13.03887 -12.98629 -12.42790 -12.28169 -12.22792 -11.98518 -11.95123 -11.74563 -11.63586 -11.41384 -11.26629 -11.13364 -10.57566 -10.41868 -10.39372 -10.12941 -9.91958 -5.05826 -0.53003 -0.17395 0.42668 1.20930 1.50116 1.59726 1.90448 1.98263 2.45273 2.88944 3.26203 3.35720 3.47673 3.54445 3.62917 3.78716 3.81863 3.86632 3.89247 3.95365 4.06421 4.18991 4.23564 4.27952 4.31084 4.45879 4.47751 4.52061 4.61315 4.64911 4.74970 4.81827 4.83855 4.86041 4.91422 4.96638 4.99779 5.07846 5.11716 5.25754 5.28609 5.37511 5.45467 6.30222 6.33732 6.71272 7.00804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.049 3.951 4 H 0.096 0.904 5 C -0.128 4.128 6 C -0.099 4.099 7 H 0.103 0.897 8 C -0.109 4.109 9 C 0.120 3.880 10 N -0.711 5.711 11 C 0.557 3.443 12 O -0.575 6.575 13 C -0.136 4.136 14 C -0.044 4.044 15 C -0.099 4.099 16 Br -0.027 7.027 17 C -0.059 4.059 18 C -0.117 4.117 19 C -0.075 4.075 20 O -0.553 6.553 21 Si 0.772 3.228 22 C -0.031 4.031 23 C -0.154 4.154 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.415 0.585 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.112 0.888 37 H 0.397 0.603 38 H -0.277 1.277 39 H -0.293 1.293 40 H 0.129 0.871 41 H 0.069 0.931 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 -2.642 4.787 5.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C -0.009 4.009 4 H 0.113 0.887 5 C -0.166 4.166 6 C -0.118 4.118 7 H 0.121 0.879 8 C -0.147 4.147 9 C -0.003 4.003 10 N -0.363 5.363 11 C 0.344 3.656 12 O -0.456 6.456 13 C -0.140 4.140 14 C -0.065 4.065 15 C -0.178 4.178 16 Br 0.059 6.941 17 C -0.078 4.078 18 C -0.118 4.118 19 C -0.185 4.185 20 O -0.361 6.361 21 Si 0.676 3.324 22 C -0.050 4.050 23 C -0.192 4.192 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.253 0.747 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.129 0.871 37 H 0.247 0.753 38 H -0.204 1.204 39 H -0.221 1.221 40 H 0.147 0.853 41 H 0.088 0.912 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.193 -2.893 3.639 5.140 hybrid contribution -1.188 0.353 -0.381 1.297 sum 1.005 -2.540 3.258 4.252 Atomic orbital electron populations 1.22919 0.80155 1.03527 1.00596 1.87906 1.20953 1.28623 1.94762 1.23964 0.94537 0.84939 0.97459 0.88663 1.23252 0.94699 1.00230 0.98408 1.22191 0.93531 0.99768 0.96269 0.87910 1.21682 0.96404 0.98522 0.98079 1.21432 0.81383 0.99831 0.97653 1.45850 1.16435 1.33074 1.40959 1.18374 0.86256 0.81690 0.79234 1.90802 1.63910 1.32617 1.58275 1.19874 0.94175 0.98889 1.01097 1.21469 0.91970 0.95341 0.97675 1.21748 0.96137 0.98169 1.01791 1.96865 1.71082 1.41962 1.84170 1.21377 1.00190 0.92585 0.93673 1.20341 0.94439 0.97367 0.99653 1.25264 1.10751 0.85768 0.96700 1.86515 1.74455 1.25148 1.49955 0.93876 0.76860 0.76220 0.85407 1.21262 0.94139 0.96724 0.92900 1.23634 0.97849 1.00728 0.97002 0.93148 0.93559 0.89100 0.89374 0.90033 0.90301 0.89296 0.91738 0.92333 0.74705 0.82006 0.82390 0.87081 0.75264 1.20369 1.22088 0.85260 0.91193 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 2 O -0.40 -1.67 10.72 -148.98 -1.60 -3.27 16 3 C 0.05 -0.02 4.31 31.18 0.13 0.12 16 4 H 0.10 -0.25 7.87 -2.39 -0.02 -0.26 16 5 C -0.13 0.38 7.47 31.12 0.23 0.62 16 6 C -0.10 0.45 3.64 -10.27 -0.04 0.41 16 7 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 8 C -0.11 0.68 5.15 30.60 0.16 0.84 16 9 C 0.12 -0.20 5.67 86.38 0.49 0.29 16 10 N -0.71 1.18 5.51 -465.96 -2.57 -1.38 16 11 C 0.56 2.88 7.77 86.79 0.67 3.56 16 12 O -0.58 -8.13 16.35 -3.90 -0.06 -8.20 16 13 C -0.14 -0.23 5.87 -20.09 -0.12 -0.35 16 14 C -0.04 0.14 9.28 22.55 0.21 0.35 16 15 C -0.10 0.28 6.22 22.28 0.14 0.41 16 16 Br -0.03 0.09 33.69 -20.37 -0.69 -0.60 16 17 C -0.06 0.19 8.40 22.34 0.19 0.37 16 18 C -0.12 0.09 5.35 -19.90 -0.11 -0.01 16 19 C -0.08 0.09 2.80 71.24 0.20 0.29 16 20 O -0.55 0.02 12.83 -148.98 -1.91 -1.89 16 21 Si 0.77 -2.74 29.79 68.60 2.04 -0.70 16 22 C -0.03 -0.10 9.22 22.53 0.21 0.11 16 23 C -0.15 0.24 7.48 31.18 0.23 0.47 16 24 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 26 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.09 -0.17 8.10 -2.38 -0.02 -0.19 16 28 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.08 -0.52 7.88 -2.38 -0.02 -0.54 16 30 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.41 -3.29 6.51 -92.71 -0.60 -3.89 16 34 H 0.16 -1.42 6.41 -2.91 -0.02 -1.44 16 35 H 0.16 -1.11 4.89 -2.91 -0.01 -1.12 16 36 H 0.11 0.02 7.96 -2.39 -0.02 0.00 16 37 H 0.40 -3.42 8.70 -74.06 -0.64 -4.06 16 38 H -0.28 -0.17 7.11 99.48 0.71 0.54 16 39 H -0.29 -1.19 7.11 99.48 0.71 -0.48 16 40 H 0.13 0.85 7.65 -2.91 -0.02 0.83 16 41 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.08 0.01 7.92 -2.39 -0.02 -0.01 16 Total: 0.00 -19.10 369.73 -1.10 -20.21 By element: Atomic # 1 Polarization: -12.73 SS G_CDS: -0.16 Total: -12.88 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 3.83 Total: 8.70 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -2.57 Total: -1.38 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: -3.57 Total: -13.35 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.04 Total: -0.70 kcal Atomic # 35 Polarization: 0.09 SS G_CDS: -0.69 Total: -0.60 kcal Total: -19.10 -1.10 -20.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.987 kcal (2) G-P(sol) polarization free energy of solvation -19.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds