Wall clock time and date at job start Sun Mar 7 2021 05:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35656 * 117.00161 * 2 1 4 4 C 1.40135 * 120.14992 * 179.97438 * 3 2 1 5 5 C 1.47530 * 120.19305 * 0.02562 * 4 3 2 6 6 O 1.21595 * 120.00119 * 359.97438 * 5 4 3 7 7 N 1.34783 * 120.00313 * 180.02562 * 5 4 3 8 8 C 1.46489 * 120.00303 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47228 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47315 * 179.97438 * 9 8 7 11 11 H 1.09004 * 112.84482 * 43.80473 * 10 9 8 12 12 C 1.53783 * 113.61351 * 272.50318 * 10 9 8 13 13 C 1.53781 * 87.07583 * 220.01784 * 12 10 9 14 14 H 1.09006 * 113.61271 * 270.87760 * 13 12 10 15 15 O 1.42899 * 113.69132 * 139.99469 * 13 12 10 16 16 C 1.42907 * 114.00484 * 112.46034 * 15 13 12 17 17 C 1.53772 * 87.08454 * 25.43072 * 13 12 10 18 18 C 1.39710 * 119.61522 * 180.02562 * 4 3 2 19 19 C 1.37783 * 119.90774 * 0.02562 * 18 4 3 20 20 C 1.50702 * 119.85055 * 179.97438 * 19 18 4 21 21 O 1.42901 * 109.46883 * 300.00216 * 20 19 18 22 22 Si 1.86294 * 109.47375 * 179.97438 * 20 19 18 23 23 C 1.38546 * 120.30152 * 359.73983 * 19 18 4 24 24 C 1.38054 * 120.39080 * 0.51910 * 23 19 18 25 25 H 1.09000 * 109.47458 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47606 * 300.00349 * 1 2 3 27 27 H 1.09006 * 109.47060 * 60.00550 * 1 2 3 28 28 H 0.97006 * 119.99179 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.47281 * 300.00005 * 8 7 5 30 30 H 1.09003 * 109.47169 * 59.99802 * 8 7 5 31 31 H 1.08991 * 109.47477 * 300.00203 * 9 8 7 32 32 H 1.08998 * 109.46848 * 60.00511 * 9 8 7 33 33 H 1.08995 * 113.61559 * 334.56458 * 12 10 9 34 34 H 1.08998 * 113.61382 * 105.47275 * 12 10 9 35 35 H 1.08994 * 109.46578 * 59.99813 * 16 15 13 36 36 H 1.08998 * 109.46901 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.46717 * 300.00098 * 16 15 13 38 38 H 1.09006 * 113.61799 * 220.01693 * 17 13 12 39 39 H 1.09007 * 113.69114 * 89.12370 * 17 13 12 40 40 H 1.07997 * 120.04505 * 180.02562 * 18 4 3 41 41 H 1.09001 * 109.46993 * 59.99584 * 20 19 18 42 42 H 0.96698 * 113.99690 * 299.99035 * 21 20 19 43 43 H 1.48498 * 110.00169 * 58.68118 * 22 20 19 44 44 H 1.48501 * 110.00238 * 179.97438 * 22 20 19 45 45 H 1.08001 * 119.80557 * 180.25852 * 23 19 18 46 46 H 1.08002 * 119.96228 * 179.76719 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2550 0.0532 0.0005 6 8 3.7094 -1.0335 0.0005 7 7 5.6005 0.1317 0.0016 8 6 6.4057 -1.0921 0.0022 9 6 7.8911 -0.7254 0.0027 10 6 8.7320 -2.0036 0.0039 11 1 8.3594 -2.7560 -0.6911 12 6 9.0185 -2.5511 1.4121 13 6 10.4379 -2.8702 0.9137 14 1 10.5319 -3.8607 0.4684 15 8 11.4593 -2.5945 1.8743 16 6 12.1197 -3.7602 2.3714 17 6 10.2433 -1.7468 -0.1182 18 6 4.0668 2.5363 0.0011 19 6 3.3038 3.6836 0.0016 20 6 3.9768 5.0320 0.0028 21 8 4.7919 5.1565 1.1699 22 14 2.6826 6.3720 0.0025 23 6 1.9207 3.6033 -0.0038 24 6 1.2924 2.3740 0.0010 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 6.0357 0.9986 0.0020 29 1 6.1754 -1.6782 0.8920 30 1 6.1768 -1.6781 -0.8880 31 1 8.1210 -0.1396 -0.8872 32 1 8.1203 -0.1394 0.8927 33 1 8.9902 -1.7892 2.1910 34 1 8.4346 -3.4366 1.6634 35 1 12.5909 -4.2913 1.5444 36 1 12.8799 -3.4663 3.0951 37 1 11.3917 -4.4121 2.8541 38 1 10.6482 -1.9829 -1.1024 39 1 10.5496 -0.7643 0.2410 40 1 5.1446 2.6037 0.0011 41 1 4.5991 5.1282 -0.8869 42 1 4.3031 5.0809 2.0008 43 1 1.8071 6.2329 1.1938 44 1 3.3335 7.7068 0.0042 45 1 1.3304 4.5077 -0.0076 46 1 0.2138 2.3195 0.0005 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16488024_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:13:38 Heat of formation + Delta-G solvation = -95.095221 kcal Electronic energy + Delta-G solvation = -26854.723566 eV Core-core repulsion = 22905.505494 eV Total energy + Delta-G solvation = -3949.218072 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.70922 -40.63329 -39.84822 -39.23334 -37.50246 -37.24918 -35.76163 -33.05956 -31.92182 -31.24914 -28.61222 -27.73832 -26.75278 -26.22596 -25.97366 -24.49911 -22.81802 -22.32351 -21.35165 -20.50157 -19.52288 -18.46155 -18.11336 -17.55828 -17.27613 -16.90223 -16.74791 -16.50687 -16.27182 -16.21942 -16.00723 -15.93916 -15.79891 -15.47536 -14.79655 -14.68913 -14.57042 -14.33707 -13.69405 -13.62899 -13.51092 -13.39859 -13.34451 -13.16243 -12.95282 -12.44287 -12.40772 -12.29686 -12.26512 -12.09840 -11.77832 -11.72672 -11.53213 -11.28578 -10.87065 -10.52778 -10.39147 -10.22379 -9.93745 -9.27714 -5.03253 -0.23967 0.19328 1.21267 1.52427 1.89731 1.91162 2.19750 2.23290 2.75168 2.87754 3.28101 3.44565 3.50336 3.58345 3.60548 3.65387 3.78661 3.84247 3.95349 4.04633 4.08115 4.20049 4.20304 4.25482 4.29502 4.35818 4.42180 4.47806 4.50884 4.55970 4.57827 4.62848 4.67956 4.77911 4.81655 4.82989 4.88658 4.94780 5.00557 5.06386 5.11919 5.22645 5.23461 5.39362 5.48919 5.53137 6.29376 6.30249 6.33149 6.59618 7.38618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.279 6.279 3 C 0.193 3.807 4 C -0.174 4.174 5 C 0.560 3.440 6 O -0.517 6.517 7 N -0.732 5.732 8 C 0.122 3.878 9 C -0.119 4.119 10 C -0.106 4.106 11 H 0.096 0.904 12 C -0.152 4.152 13 C 0.058 3.942 14 H 0.087 0.913 15 O -0.378 6.378 16 C 0.029 3.971 17 C -0.131 4.131 18 C -0.020 4.020 19 C -0.167 4.167 20 C -0.069 4.069 21 O -0.530 6.530 22 Si 0.682 3.318 23 C -0.047 4.047 24 C -0.214 4.214 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.398 0.602 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.136 0.864 41 H 0.120 0.880 42 H 0.377 0.623 43 H -0.260 1.260 44 H -0.256 1.256 45 H 0.134 0.866 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 1.559 -1.882 2.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.189 6.189 3 C 0.144 3.856 4 C -0.178 4.178 5 C 0.347 3.653 6 O -0.393 6.393 7 N -0.385 5.385 8 C -0.001 4.001 9 C -0.157 4.157 10 C -0.125 4.125 11 H 0.115 0.885 12 C -0.190 4.190 13 C 0.001 3.999 14 H 0.105 0.895 15 O -0.297 6.297 16 C -0.068 4.068 17 C -0.169 4.169 18 C -0.039 4.039 19 C -0.168 4.168 20 C -0.179 4.179 21 O -0.336 6.336 22 Si 0.583 3.417 23 C -0.065 4.065 24 C -0.233 4.233 25 H 0.123 0.877 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.234 0.766 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.153 0.847 41 H 0.137 0.863 42 H 0.224 0.776 43 H -0.185 1.185 44 H -0.181 1.181 45 H 0.152 0.848 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.593 1.473 -1.842 2.846 hybrid contribution 0.266 -0.117 1.057 1.097 sum -1.327 1.356 -0.785 2.053 Atomic orbital electron populations 1.23237 0.78203 1.04757 1.01447 1.86386 1.21186 1.25199 1.86169 1.19101 0.90952 0.85066 0.90514 1.19351 0.90914 0.93929 1.13620 1.17944 0.81859 0.88657 0.76823 1.90848 1.71551 1.28618 1.48238 1.45916 1.05991 1.10012 1.76617 1.21360 0.89470 0.86642 1.02670 1.21746 0.93086 0.97728 1.03123 1.22226 0.94766 0.97535 0.97992 0.88527 1.23616 0.96277 1.01941 0.97158 1.23727 0.87367 0.98594 0.90260 0.89496 1.87950 1.51433 1.31245 1.59055 1.22804 0.96808 0.88426 0.98712 1.23279 0.94975 0.99868 0.98770 1.20971 0.99912 0.89833 0.93159 1.20068 0.93560 0.95910 1.07255 1.24938 1.02547 0.99174 0.91203 1.86598 1.36840 1.94457 1.15755 0.95090 0.79588 0.77580 0.89466 1.20985 0.93728 0.97339 0.94436 1.21231 1.00740 0.91541 1.09749 0.87673 0.92370 0.92226 0.76640 0.91272 0.91307 0.90812 0.90851 0.89033 0.91124 0.93960 0.89601 0.93981 0.90813 0.88936 0.84675 0.86261 0.77561 1.18455 1.18082 0.84844 0.84131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 9.81 101.05 0.99 0.98 16 2 O -0.28 -1.04 8.57 -40.55 -0.35 -1.39 16 3 C 0.19 0.48 6.70 -38.70 -0.26 0.22 16 4 C -0.17 -0.43 5.89 -104.85 -0.62 -1.05 16 5 C 0.56 2.30 7.76 -12.47 -0.10 2.20 16 6 O -0.52 -4.14 15.16 -16.60 -0.25 -4.39 16 7 N -0.73 -0.66 5.51 -61.35 -0.34 -1.00 16 8 C 0.12 0.06 5.66 -4.05 -0.02 0.03 16 9 C -0.12 0.18 5.17 -26.73 -0.14 0.05 16 10 C -0.11 0.13 3.65 -89.81 -0.33 -0.20 16 11 H 0.10 -0.15 8.13 -51.93 -0.42 -0.58 16 12 C -0.15 0.03 7.47 -25.92 -0.19 -0.17 16 13 C 0.06 0.02 4.31 -25.92 -0.11 -0.09 16 14 H 0.09 -0.06 7.87 -51.93 -0.41 -0.47 16 15 O -0.38 -0.91 10.72 -35.23 -0.38 -1.29 16 16 C 0.03 0.00 10.85 101.05 1.10 1.10 16 17 C -0.13 0.07 7.47 -25.93 -0.19 -0.12 16 18 C -0.02 0.00 9.09 -39.20 -0.36 -0.36 16 19 C -0.17 0.13 5.39 -104.67 -0.56 -0.43 16 20 C -0.07 0.10 2.81 36.01 0.10 0.20 16 21 O -0.53 0.02 12.76 -35.23 -0.45 -0.43 16 22 Si 0.68 -1.30 29.77 -169.99 -5.06 -6.36 16 23 C -0.05 0.06 8.66 -39.53 -0.34 -0.29 16 24 C -0.21 0.05 9.03 -39.47 -0.36 -0.31 16 25 H 0.10 -0.17 8.14 -51.93 -0.42 -0.59 16 26 H 0.06 -0.12 7.66 -51.93 -0.40 -0.52 16 27 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 28 H 0.40 -0.63 6.50 -40.82 -0.27 -0.90 16 29 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 32 H 0.07 -0.11 7.84 -51.93 -0.41 -0.52 16 33 H 0.09 0.05 7.89 -51.93 -0.41 -0.36 16 34 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 35 H 0.04 -0.04 8.14 -51.93 -0.42 -0.46 16 36 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 37 H 0.04 -0.03 8.14 -51.93 -0.42 -0.45 16 38 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 39 H 0.09 0.00 8.10 -51.92 -0.42 -0.42 16 40 H 0.14 -0.24 6.40 -52.49 -0.34 -0.58 16 41 H 0.12 -0.28 7.96 -51.93 -0.41 -0.69 16 42 H 0.38 -0.96 8.70 45.56 0.40 -0.57 16 43 H -0.26 -0.01 7.11 56.52 0.40 0.39 16 44 H -0.26 -0.42 7.11 56.52 0.40 -0.01 16 45 H 0.13 -0.44 4.85 -52.49 -0.25 -0.70 16 46 H 0.14 -0.35 6.30 -52.49 -0.33 -0.68 16 LS Contribution 375.56 15.07 5.66 5.66 Total: 0.00 -9.11 375.56 -9.63 -18.74 By element: Atomic # 1 Polarization: -4.24 SS G_CDS: -7.07 Total: -11.31 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.39 Total: 1.77 kcal Atomic # 7 Polarization: -0.66 SS G_CDS: -0.34 Total: -1.00 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -1.43 Total: -7.50 kcal Atomic # 14 Polarization: -1.30 SS G_CDS: -5.06 Total: -6.36 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -9.11 -9.63 -18.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.356 kcal (2) G-P(sol) polarization free energy of solvation -9.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds