Wall clock time and date at job start Sun Mar 7 2021 05:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35656 * 117.00161 * 2 1 4 4 C 1.40135 * 120.14992 * 179.97438 * 3 2 1 5 5 C 1.47530 * 120.19305 * 0.02562 * 4 3 2 6 6 O 1.21595 * 120.00119 * 359.97438 * 5 4 3 7 7 N 1.34783 * 120.00313 * 180.02562 * 5 4 3 8 8 C 1.46489 * 120.00303 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47228 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47315 * 179.97438 * 9 8 7 11 11 H 1.09004 * 112.84482 * 43.80473 * 10 9 8 12 12 C 1.53783 * 113.61351 * 272.50318 * 10 9 8 13 13 C 1.53781 * 87.07583 * 220.01784 * 12 10 9 14 14 H 1.09006 * 113.61271 * 270.87760 * 13 12 10 15 15 O 1.42899 * 113.69132 * 139.99469 * 13 12 10 16 16 C 1.42907 * 114.00484 * 112.46034 * 15 13 12 17 17 C 1.53772 * 87.08454 * 25.43072 * 13 12 10 18 18 C 1.39710 * 119.61522 * 180.02562 * 4 3 2 19 19 C 1.37783 * 119.90774 * 0.02562 * 18 4 3 20 20 C 1.50702 * 119.85055 * 179.97438 * 19 18 4 21 21 O 1.42901 * 109.46883 * 300.00216 * 20 19 18 22 22 Si 1.86294 * 109.47375 * 179.97438 * 20 19 18 23 23 C 1.38546 * 120.30152 * 359.73983 * 19 18 4 24 24 C 1.38054 * 120.39080 * 0.51910 * 23 19 18 25 25 H 1.09000 * 109.47458 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47606 * 300.00349 * 1 2 3 27 27 H 1.09006 * 109.47060 * 60.00550 * 1 2 3 28 28 H 0.97006 * 119.99179 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.47281 * 300.00005 * 8 7 5 30 30 H 1.09003 * 109.47169 * 59.99802 * 8 7 5 31 31 H 1.08991 * 109.47477 * 300.00203 * 9 8 7 32 32 H 1.08998 * 109.46848 * 60.00511 * 9 8 7 33 33 H 1.08995 * 113.61559 * 334.56458 * 12 10 9 34 34 H 1.08998 * 113.61382 * 105.47275 * 12 10 9 35 35 H 1.08994 * 109.46578 * 59.99813 * 16 15 13 36 36 H 1.08998 * 109.46901 * 180.02562 * 16 15 13 37 37 H 1.08994 * 109.46717 * 300.00098 * 16 15 13 38 38 H 1.09006 * 113.61799 * 220.01693 * 17 13 12 39 39 H 1.09007 * 113.69114 * 89.12370 * 17 13 12 40 40 H 1.07997 * 120.04505 * 180.02562 * 18 4 3 41 41 H 1.09001 * 109.46993 * 59.99584 * 20 19 18 42 42 H 0.96698 * 113.99690 * 299.99035 * 21 20 19 43 43 H 1.48498 * 110.00169 * 58.68118 * 22 20 19 44 44 H 1.48501 * 110.00238 * 179.97438 * 22 20 19 45 45 H 1.08001 * 119.80557 * 180.25852 * 23 19 18 46 46 H 1.08002 * 119.96228 * 179.76719 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2550 0.0532 0.0005 6 8 3.7094 -1.0335 0.0005 7 7 5.6005 0.1317 0.0016 8 6 6.4057 -1.0921 0.0022 9 6 7.8911 -0.7254 0.0027 10 6 8.7320 -2.0036 0.0039 11 1 8.3594 -2.7560 -0.6911 12 6 9.0185 -2.5511 1.4121 13 6 10.4379 -2.8702 0.9137 14 1 10.5319 -3.8607 0.4684 15 8 11.4593 -2.5945 1.8743 16 6 12.1197 -3.7602 2.3714 17 6 10.2433 -1.7468 -0.1182 18 6 4.0668 2.5363 0.0011 19 6 3.3038 3.6836 0.0016 20 6 3.9768 5.0320 0.0028 21 8 4.7919 5.1565 1.1699 22 14 2.6826 6.3720 0.0025 23 6 1.9207 3.6033 -0.0038 24 6 1.2924 2.3740 0.0010 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 6.0357 0.9986 0.0020 29 1 6.1754 -1.6782 0.8920 30 1 6.1768 -1.6781 -0.8880 31 1 8.1210 -0.1396 -0.8872 32 1 8.1203 -0.1394 0.8927 33 1 8.9902 -1.7892 2.1910 34 1 8.4346 -3.4366 1.6634 35 1 12.5909 -4.2913 1.5444 36 1 12.8799 -3.4663 3.0951 37 1 11.3917 -4.4121 2.8541 38 1 10.6482 -1.9829 -1.1024 39 1 10.5496 -0.7643 0.2410 40 1 5.1446 2.6037 0.0011 41 1 4.5991 5.1282 -0.8869 42 1 4.3031 5.0809 2.0008 43 1 1.8071 6.2329 1.1938 44 1 3.3335 7.7068 0.0042 45 1 1.3304 4.5077 -0.0076 46 1 0.2138 2.3195 0.0005 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_12496546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:13:37 Heat of formation + Delta-G solvation = -94.933753 kcal Electronic energy + Delta-G solvation = -26854.716564 eV Core-core repulsion = 22905.505494 eV Total energy + Delta-G solvation = -3949.211070 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.77241 -40.63787 -40.01864 -39.22651 -37.55694 -37.22905 -35.94174 -33.10423 -31.89725 -31.25882 -28.54238 -27.73892 -26.73553 -26.16075 -26.01972 -24.52191 -22.79834 -22.34800 -21.46568 -20.48379 -19.54504 -18.44166 -18.18059 -17.58099 -17.30964 -16.96286 -16.76674 -16.55553 -16.35956 -16.15546 -16.01955 -15.92799 -15.79025 -15.52695 -14.85318 -14.69053 -14.52902 -14.45883 -13.67222 -13.59225 -13.48887 -13.39001 -13.36240 -13.11876 -12.96249 -12.43073 -12.40761 -12.27816 -12.23069 -12.04833 -11.75163 -11.68104 -11.54312 -11.25451 -11.00252 -10.55957 -10.41874 -10.31188 -10.04367 -9.29412 -4.89102 -0.26893 0.21290 1.34036 1.62760 1.76643 2.00247 2.09720 2.26979 2.67511 2.88742 3.41106 3.47883 3.56676 3.62355 3.64255 3.73404 3.81248 3.88207 3.97954 4.07882 4.15033 4.27417 4.28247 4.30654 4.36076 4.40813 4.46122 4.51888 4.60319 4.64035 4.64296 4.68854 4.74257 4.81402 4.82943 4.85480 4.92582 4.96252 5.01736 5.09877 5.12589 5.25769 5.27184 5.39730 5.44614 5.56625 6.29689 6.29897 6.50075 6.51810 7.19277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.314 6.314 3 C 0.170 3.830 4 C -0.198 4.198 5 C 0.554 3.446 6 O -0.567 6.567 7 N -0.719 5.719 8 C 0.124 3.876 9 C -0.108 4.108 10 C -0.099 4.099 11 H 0.103 0.897 12 C -0.154 4.154 13 C 0.050 3.950 14 H 0.097 0.903 15 O -0.403 6.403 16 C 0.024 3.976 17 C -0.128 4.128 18 C -0.017 4.017 19 C -0.165 4.165 20 C -0.073 4.073 21 O -0.547 6.547 22 Si 0.762 3.238 23 C -0.042 4.042 24 C -0.212 4.212 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.411 0.589 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.150 0.850 41 H 0.131 0.869 42 H 0.386 0.614 43 H -0.281 1.281 44 H -0.306 1.306 45 H 0.158 0.842 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 2.766 -2.420 4.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.226 6.226 3 C 0.122 3.878 4 C -0.202 4.202 5 C 0.342 3.658 6 O -0.447 6.447 7 N -0.372 5.372 8 C 0.000 4.000 9 C -0.146 4.146 10 C -0.118 4.118 11 H 0.121 0.879 12 C -0.192 4.192 13 C -0.007 4.007 14 H 0.115 0.885 15 O -0.322 6.322 16 C -0.072 4.072 17 C -0.166 4.166 18 C -0.035 4.035 19 C -0.165 4.165 20 C -0.183 4.183 21 O -0.355 6.355 22 Si 0.668 3.332 23 C -0.059 4.059 24 C -0.230 4.230 25 H 0.125 0.875 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.249 0.751 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.168 0.832 41 H 0.149 0.851 42 H 0.235 0.765 43 H -0.208 1.208 44 H -0.234 1.234 45 H 0.175 0.825 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.749 2.684 -2.383 3.993 hybrid contribution 0.340 -0.434 1.263 1.378 sum -1.409 2.251 -1.121 2.882 Atomic orbital electron populations 1.23452 0.76501 1.05471 1.02896 1.86338 1.23235 1.26436 1.86554 1.19429 0.91325 0.85595 0.91447 1.19417 0.91203 0.93972 1.15573 1.18345 0.82678 0.88699 0.76050 1.90808 1.72573 1.30400 1.50911 1.45852 1.05253 1.10875 1.75226 1.21345 0.90671 0.86398 1.01550 1.21665 0.91264 0.97748 1.03879 1.22194 0.94553 0.97709 0.97342 0.87918 1.23604 0.96278 1.01762 0.97556 1.23915 0.87055 0.99449 0.90315 0.88526 1.87910 1.52062 1.32616 1.59661 1.22925 0.97030 0.88035 0.99217 1.23252 0.95154 0.99296 0.98876 1.21103 1.00738 0.89160 0.92530 1.20185 0.93840 0.95846 1.06661 1.25125 1.02963 0.98828 0.91338 1.86576 1.37821 1.94477 1.16622 0.94198 0.77536 0.73888 0.87565 1.21283 0.93792 0.97895 0.92974 1.21475 1.01786 0.90844 1.08907 0.87490 0.90985 0.90584 0.75087 0.92761 0.92155 0.89502 0.90553 0.89936 0.91174 0.93091 0.89084 0.93553 0.89971 0.89459 0.83233 0.85124 0.76451 1.20760 1.23445 0.82460 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.85 8.57 -68.80 -0.59 -3.43 16 3 C 0.17 0.98 6.70 22.84 0.15 1.14 16 4 C -0.20 -1.15 5.89 -20.01 -0.12 -1.27 16 5 C 0.55 5.52 7.76 86.69 0.67 6.19 16 6 O -0.57 -10.67 15.16 16.90 0.26 -10.41 16 7 N -0.72 -1.95 5.51 -466.27 -2.57 -4.52 16 8 C 0.12 0.25 5.66 86.38 0.49 0.74 16 9 C -0.11 0.34 5.17 30.60 0.16 0.50 16 10 C -0.10 0.23 3.65 -10.27 -0.04 0.19 16 11 H 0.10 -0.34 8.13 -2.39 -0.02 -0.36 16 12 C -0.15 -0.05 7.47 31.12 0.23 0.18 16 13 C 0.05 0.05 4.31 31.12 0.13 0.19 16 14 H 0.10 -0.14 7.87 -2.38 -0.02 -0.16 16 15 O -0.40 -2.15 10.72 -148.98 -1.60 -3.74 16 16 C 0.02 0.01 10.85 113.37 1.23 1.24 16 17 C -0.13 0.16 7.47 31.12 0.23 0.39 16 18 C -0.02 0.01 9.09 22.52 0.20 0.21 16 19 C -0.16 0.46 5.39 -19.90 -0.11 0.35 16 20 C -0.07 0.32 2.81 71.24 0.20 0.52 16 21 O -0.55 0.62 12.76 -148.98 -1.90 -1.28 16 22 Si 0.76 -3.82 29.77 68.60 2.04 -1.78 16 23 C -0.04 0.17 8.66 22.30 0.19 0.36 16 24 C -0.21 0.27 9.03 22.34 0.20 0.47 16 25 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 27 H 0.08 -0.38 7.66 -2.38 -0.02 -0.39 16 28 H 0.41 -1.31 6.50 -92.70 -0.60 -1.91 16 29 H 0.05 0.28 8.14 -2.38 -0.02 0.27 16 30 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.08 -0.25 7.84 -2.39 -0.02 -0.27 16 33 H 0.08 0.18 7.89 -2.39 -0.02 0.16 16 34 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 39 H 0.09 0.00 8.10 -2.38 -0.02 -0.02 16 40 H 0.15 -0.65 6.40 -2.91 -0.02 -0.66 16 41 H 0.13 -0.84 7.96 -2.39 -0.02 -0.86 16 42 H 0.39 -2.33 8.70 -74.06 -0.64 -2.98 16 43 H -0.28 0.38 7.11 99.48 0.71 1.09 16 44 H -0.31 -1.10 7.11 99.48 0.71 -0.39 16 45 H 0.16 -1.44 4.85 -2.91 -0.01 -1.46 16 46 H 0.16 -1.06 6.30 -2.91 -0.02 -1.07 16 Total: 0.00 -23.51 375.56 0.39 -23.12 By element: Atomic # 1 Polarization: -10.24 SS G_CDS: -0.21 Total: -10.44 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: 4.95 Total: 12.49 kcal Atomic # 7 Polarization: -1.95 SS G_CDS: -2.57 Total: -4.52 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -3.83 Total: -18.87 kcal Atomic # 14 Polarization: -3.82 SS G_CDS: 2.04 Total: -1.78 kcal Total: -23.51 0.39 -23.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_12496546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.814 kcal (2) G-P(sol) polarization free energy of solvation -23.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds