Wall clock time and date at job start Sun Mar 7 2021 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99929 * 2 1 4 4 H 1.08996 * 112.84561 * 18.80192 * 3 2 1 5 5 C 1.53777 * 113.61388 * 150.00166 * 3 2 1 6 6 C 1.53777 * 87.08233 * 139.97756 * 5 3 2 7 7 H 1.09001 * 113.61384 * 89.19889 * 6 5 3 8 8 C 1.52998 * 113.61893 * 220.01485 * 6 5 3 9 9 C 1.52998 * 109.47419 * 185.00204 * 8 6 5 10 10 N 1.46502 * 109.46762 * 180.02562 * 9 8 6 11 11 C 1.34779 * 119.99714 * 180.02562 * 10 9 8 12 12 O 1.21579 * 119.99967 * 359.97438 * 11 10 9 13 13 C 1.47656 * 120.00220 * 179.97438 * 11 10 9 14 14 C 1.40010 * 120.45233 * 354.03292 * 13 11 10 15 15 N 1.31307 * 121.37524 * 179.97438 * 14 13 11 16 16 C 1.32824 * 121.89329 * 359.97438 * 15 14 13 17 17 N 1.37150 * 132.96525 * 180.02562 * 16 15 14 18 18 C 1.36947 * 110.11637 * 179.97438 * 17 16 15 19 19 C 1.34184 * 109.94970 * 0.02562 * 18 17 16 20 20 C 1.50702 * 126.59706 * 179.97438 * 19 18 17 21 21 O 1.42894 * 109.47159 * 255.01978 * 20 19 18 22 22 Si 1.86300 * 109.47159 * 15.02317 * 20 19 18 23 23 C 1.41016 * 120.08220 * 0.30485 * 16 15 14 24 24 C 1.39285 * 119.61525 * 359.39418 * 23 16 15 25 25 C 1.50704 * 121.02928 * 180.26631 * 24 23 16 26 26 C 1.53778 * 87.08098 * 334.56735 * 6 5 3 27 27 H 1.08998 * 109.47341 * 60.00669 * 1 2 3 28 28 H 1.09003 * 109.47183 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47410 * 300.00223 * 1 2 3 30 30 H 1.08994 * 113.61738 * 25.42841 * 5 3 2 31 31 H 1.09008 * 113.61124 * 254.52551 * 5 3 2 32 32 H 1.09004 * 109.46660 * 64.99799 * 8 6 5 33 33 H 1.09001 * 109.46932 * 305.00280 * 8 6 5 34 34 H 1.08992 * 109.47034 * 59.99765 * 9 8 6 35 35 H 1.09001 * 109.47131 * 299.99954 * 9 8 6 36 36 H 0.96997 * 120.00209 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.31559 * 359.94963 * 14 13 11 38 38 H 0.96999 * 124.94431 * 359.96117 * 17 16 15 39 39 H 1.07997 * 125.02458 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.46738 * 135.02210 * 20 19 18 41 41 H 0.96709 * 113.99684 * 60.00466 * 21 20 19 42 42 H 1.48504 * 109.99897 * 58.67779 * 22 20 19 43 43 H 1.48500 * 109.99984 * 179.97438 * 22 20 19 44 44 H 1.08999 * 109.47395 * 264.04648 * 25 24 23 45 45 H 1.09001 * 109.47392 * 24.05166 * 25 24 23 46 46 H 1.09005 * 109.47075 * 144.05187 * 25 24 23 47 47 H 1.09002 * 113.61402 * 139.98054 * 26 6 5 48 48 H 1.09000 * 113.61131 * 270.88372 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0788 0.3237 5 6 3.3755 1.3719 0.7045 6 6 3.8227 2.3181 -0.4223 7 1 3.6235 3.3694 -0.2144 8 6 5.2542 2.0680 -0.9007 9 6 5.6425 3.1339 -1.9273 10 7 7.0131 2.8940 -2.3858 11 6 7.5718 3.7140 -3.2979 12 8 6.9382 4.6526 -3.7404 13 6 8.9533 3.4726 -3.7596 14 6 9.7348 2.4729 -3.1680 15 7 10.9651 2.2424 -3.5646 16 6 11.5296 2.9414 -4.5429 17 7 12.7689 2.8969 -5.1287 18 6 12.8589 3.8449 -6.1129 19 6 11.7058 4.5255 -6.1998 20 6 11.3959 5.6499 -7.1542 21 8 11.4209 6.8930 -6.4500 22 14 12.6702 5.6801 -8.5130 23 6 10.8083 3.9695 -5.1842 24 6 9.4984 4.2379 -4.7942 25 6 8.6964 5.3251 -5.4618 26 6 2.7534 1.6488 -1.3018 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9088 0.4214 0.7138 31 1 3.3383 1.8472 1.6848 32 1 5.3166 1.0814 -1.3599 33 1 5.9351 2.1169 -0.0509 34 1 5.5800 4.1204 -1.4681 35 1 4.9616 3.0850 -2.7771 36 1 7.5186 2.1454 -2.0324 37 1 9.3171 1.8791 -2.3684 38 1 13.4785 2.2834 -4.8818 39 1 13.7293 4.0188 -6.7282 40 1 10.4071 5.4971 -7.5867 41 1 12.2724 7.0948 -6.0383 42 1 12.6762 4.3811 -9.2326 43 1 12.3754 6.7842 -9.4613 44 1 8.7629 6.2397 -4.8726 45 1 9.0920 5.5071 -6.4611 46 1 7.6539 5.0150 -5.5348 47 1 2.2140 2.3476 -1.9412 48 1 3.1166 0.7739 -1.8410 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16488024_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:01 Heat of formation + Delta-G solvation = -14.157037 kcal Electronic energy + Delta-G solvation = -29602.041138 eV Core-core repulsion = 25432.173280 eV Total energy + Delta-G solvation = -4169.867859 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.82227 -40.92454 -40.45235 -38.71139 -37.76231 -37.50936 -36.04831 -34.82796 -32.39056 -31.83626 -30.54091 -28.79277 -27.73183 -26.77767 -26.53662 -25.57922 -24.41053 -23.71923 -22.57689 -21.72160 -20.70412 -20.50762 -19.24649 -18.74974 -17.71828 -17.55912 -17.49168 -16.98277 -16.77843 -16.61328 -16.46755 -16.12834 -15.99792 -15.70371 -15.50626 -15.40491 -15.08659 -14.74682 -14.59295 -14.09945 -13.87846 -13.77040 -13.67308 -13.51249 -13.41697 -13.41339 -13.18374 -13.01718 -12.91641 -12.43094 -12.32637 -12.25856 -12.01995 -11.79334 -11.53808 -11.30082 -11.08592 -10.99566 -10.41931 -10.39048 -10.16328 -10.04744 -9.56103 -9.11135 -5.12674 -0.20023 -0.03259 1.24285 1.38991 1.57758 1.65768 1.95267 1.97534 2.15054 2.86417 2.88405 3.29906 3.42577 3.45534 3.53997 3.56948 3.63372 3.74371 3.77506 3.80633 3.83668 4.02403 4.10038 4.19731 4.24839 4.28351 4.31138 4.40267 4.42773 4.46800 4.54702 4.62467 4.67442 4.76825 4.79935 4.80634 4.81943 4.92398 4.98467 5.01254 5.06807 5.09222 5.20642 5.22113 5.37332 5.38973 5.43916 5.59598 5.79849 6.11539 6.28957 6.51277 6.62378 6.87558 7.29016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.058 3.942 4 H 0.087 0.913 5 C -0.132 4.132 6 C -0.106 4.106 7 H 0.097 0.903 8 C -0.120 4.120 9 C 0.121 3.879 10 N -0.730 5.730 11 C 0.570 3.430 12 O -0.530 6.530 13 C -0.234 4.234 14 C 0.181 3.819 15 N -0.504 5.504 16 C 0.307 3.693 17 N -0.570 5.570 18 C 0.069 3.931 19 C -0.181 4.181 20 C -0.036 4.036 21 O -0.537 6.537 22 Si 0.686 3.314 23 C -0.149 4.149 24 C 0.084 3.916 25 C -0.123 4.123 26 C -0.152 4.152 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.399 0.601 37 H 0.162 0.838 38 H 0.425 0.575 39 H 0.186 0.814 40 H 0.116 0.884 41 H 0.378 0.622 42 H -0.255 1.255 43 H -0.253 1.253 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.070 0.930 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 -1.193 1.349 3.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.297 6.297 3 C 0.000 4.000 4 H 0.105 0.895 5 C -0.169 4.169 6 C -0.125 4.125 7 H 0.115 0.885 8 C -0.157 4.157 9 C -0.002 4.002 10 N -0.382 5.382 11 C 0.358 3.642 12 O -0.407 6.407 13 C -0.241 4.241 14 C 0.012 3.988 15 N -0.217 5.217 16 C 0.074 3.926 17 N -0.176 5.176 18 C -0.057 4.057 19 C -0.189 4.189 20 C -0.147 4.147 21 O -0.342 6.342 22 Si 0.587 3.413 23 C -0.156 4.156 24 C 0.075 3.925 25 C -0.178 4.178 26 C -0.190 4.190 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.234 0.766 37 H 0.179 0.821 38 H 0.264 0.736 39 H 0.203 0.797 40 H 0.133 0.867 41 H 0.225 0.775 42 H -0.180 1.180 43 H -0.177 1.177 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.089 0.911 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.359 -1.428 0.308 3.663 hybrid contribution -0.603 -0.220 0.267 0.695 sum 2.756 -1.648 0.574 3.262 Atomic orbital electron populations 1.22804 0.81033 1.02927 0.99990 1.87948 1.19780 1.27377 1.94593 1.23731 0.93955 0.85355 0.96942 0.89487 1.23283 0.95381 1.00296 0.97952 1.22225 0.93677 0.99605 0.97020 0.88517 1.21753 0.96399 0.99007 0.98585 1.21385 0.82009 0.99155 0.97664 1.45906 1.16214 1.31980 1.44110 1.17863 0.85466 0.82051 0.78801 1.90763 1.63889 1.30054 1.56035 1.20439 0.96527 1.03587 1.03558 1.22510 0.87399 0.92919 0.95995 1.66437 1.12677 1.28681 1.13918 1.18497 0.86936 0.93822 0.93359 1.41505 1.12178 1.32860 1.31012 1.21722 0.99477 0.91375 0.93125 1.20689 0.93822 1.02602 1.01775 1.24516 1.08252 0.82315 0.99644 1.86536 1.39149 1.35723 1.72775 0.95327 0.86067 0.81127 0.78820 1.19464 0.94689 1.00317 1.01104 1.19933 0.90811 0.91946 0.89768 1.21170 1.00634 0.96167 0.99856 1.23616 0.97368 1.00934 0.97070 0.93970 0.89596 0.93963 0.88925 0.90800 0.90800 0.90755 0.91181 0.91171 0.76610 0.82071 0.73584 0.79718 0.86665 0.77535 1.17973 1.17687 0.89378 0.91437 0.88562 0.91126 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.09 16 2 O -0.38 -0.81 10.71 -35.23 -0.38 -1.19 16 3 C 0.06 0.00 4.31 -25.92 -0.11 -0.11 16 4 H 0.09 -0.09 7.87 -51.93 -0.41 -0.49 16 5 C -0.13 0.12 7.47 -25.92 -0.19 -0.07 16 6 C -0.11 0.18 3.65 -89.81 -0.33 -0.15 16 7 H 0.10 -0.20 8.13 -51.93 -0.42 -0.62 16 8 C -0.12 0.27 5.16 -26.73 -0.14 0.13 16 9 C 0.12 -0.06 5.67 -4.04 -0.02 -0.08 16 10 N -0.73 0.11 5.51 -61.31 -0.34 -0.23 16 11 C 0.57 1.71 7.72 -12.41 -0.10 1.61 16 12 O -0.53 -3.20 13.49 5.30 0.07 -3.13 16 13 C -0.23 -0.63 5.89 -104.82 -0.62 -1.25 16 14 C 0.18 0.23 10.67 -17.11 -0.18 0.05 16 15 N -0.50 -1.40 10.37 -11.96 -0.12 -1.52 16 16 C 0.31 0.74 8.42 -155.72 -1.31 -0.58 16 17 N -0.57 0.54 6.04 -12.12 -0.07 0.47 16 18 C 0.07 -0.15 10.44 -16.70 -0.17 -0.32 16 19 C -0.18 -0.04 5.57 -102.72 -0.57 -0.62 16 20 C -0.04 0.01 2.06 36.01 0.07 0.09 16 21 O -0.54 -0.05 12.88 -35.23 -0.45 -0.50 16 22 Si 0.69 -1.44 30.77 -169.99 -5.23 -6.67 16 23 C -0.15 -0.42 6.16 -105.13 -0.65 -1.06 16 24 C 0.08 0.30 5.98 -103.67 -0.62 -0.32 16 25 C -0.12 -0.43 8.69 36.01 0.31 -0.12 16 26 C -0.15 0.09 7.46 -25.92 -0.19 -0.10 16 27 H 0.04 -0.04 8.14 -51.93 -0.42 -0.46 16 28 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 29 H 0.04 -0.04 8.14 -51.93 -0.42 -0.47 16 30 H 0.09 -0.04 8.10 -51.93 -0.42 -0.46 16 31 H 0.07 -0.11 8.14 -51.92 -0.42 -0.53 16 32 H 0.07 -0.17 7.84 -51.93 -0.41 -0.58 16 33 H 0.07 -0.21 8.14 -51.93 -0.42 -0.63 16 34 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 35 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 36 H 0.40 -1.11 6.55 -40.82 -0.27 -1.38 16 37 H 0.16 -0.38 6.43 -52.49 -0.34 -0.71 16 38 H 0.43 -1.51 8.96 -40.82 -0.37 -1.88 16 39 H 0.19 -1.16 6.36 -52.49 -0.33 -1.49 16 40 H 0.12 0.08 6.05 -51.93 -0.31 -0.24 16 41 H 0.38 -1.46 8.70 45.56 0.40 -1.07 16 42 H -0.26 -0.08 7.11 56.52 0.40 0.32 16 43 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.18 5.05 -51.93 -0.26 -0.08 16 46 H 0.10 0.45 5.95 -51.93 -0.31 0.14 16 47 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 48 H 0.09 0.01 7.90 -51.93 -0.41 -0.40 16 LS Contribution 387.31 15.07 5.84 5.84 Total: 0.00 -10.30 387.31 -11.28 -21.57 By element: Atomic # 1 Polarization: -5.97 SS G_CDS: -6.86 Total: -12.84 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.73 Total: -1.80 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -0.53 Total: -1.28 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.76 Total: -4.82 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: -5.23 Total: -6.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -10.30 -11.28 -21.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.416 kcal (2) G-P(sol) polarization free energy of solvation -10.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds