Wall clock time and date at job start Sun Mar 7 2021 05:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99929 * 2 1 4 4 H 1.08996 * 112.84561 * 18.80192 * 3 2 1 5 5 C 1.53777 * 113.61388 * 150.00166 * 3 2 1 6 6 C 1.53777 * 87.08233 * 139.97756 * 5 3 2 7 7 H 1.09001 * 113.61384 * 89.19889 * 6 5 3 8 8 C 1.52998 * 113.61893 * 220.01485 * 6 5 3 9 9 C 1.52998 * 109.47419 * 185.00204 * 8 6 5 10 10 N 1.46502 * 109.46762 * 180.02562 * 9 8 6 11 11 C 1.34779 * 119.99714 * 180.02562 * 10 9 8 12 12 O 1.21579 * 119.99967 * 359.97438 * 11 10 9 13 13 C 1.47656 * 120.00220 * 179.97438 * 11 10 9 14 14 C 1.40010 * 120.45233 * 354.03292 * 13 11 10 15 15 N 1.31307 * 121.37524 * 179.97438 * 14 13 11 16 16 C 1.32824 * 121.89329 * 359.97438 * 15 14 13 17 17 N 1.37150 * 132.96525 * 180.02562 * 16 15 14 18 18 C 1.36947 * 110.11637 * 179.97438 * 17 16 15 19 19 C 1.34184 * 109.94970 * 0.02562 * 18 17 16 20 20 C 1.50702 * 126.59706 * 179.97438 * 19 18 17 21 21 O 1.42894 * 109.47159 * 255.01978 * 20 19 18 22 22 Si 1.86300 * 109.47159 * 15.02317 * 20 19 18 23 23 C 1.41016 * 120.08220 * 0.30485 * 16 15 14 24 24 C 1.39285 * 119.61525 * 359.39418 * 23 16 15 25 25 C 1.50704 * 121.02928 * 180.26631 * 24 23 16 26 26 C 1.53778 * 87.08098 * 334.56735 * 6 5 3 27 27 H 1.08998 * 109.47341 * 60.00669 * 1 2 3 28 28 H 1.09003 * 109.47183 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47410 * 300.00223 * 1 2 3 30 30 H 1.08994 * 113.61738 * 25.42841 * 5 3 2 31 31 H 1.09008 * 113.61124 * 254.52551 * 5 3 2 32 32 H 1.09004 * 109.46660 * 64.99799 * 8 6 5 33 33 H 1.09001 * 109.46932 * 305.00280 * 8 6 5 34 34 H 1.08992 * 109.47034 * 59.99765 * 9 8 6 35 35 H 1.09001 * 109.47131 * 299.99954 * 9 8 6 36 36 H 0.96997 * 120.00209 * 359.97438 * 10 9 8 37 37 H 1.08000 * 119.31559 * 359.94963 * 14 13 11 38 38 H 0.96999 * 124.94431 * 359.96117 * 17 16 15 39 39 H 1.07997 * 125.02458 * 180.02562 * 18 17 16 40 40 H 1.09000 * 109.46738 * 135.02210 * 20 19 18 41 41 H 0.96709 * 113.99684 * 60.00466 * 21 20 19 42 42 H 1.48504 * 109.99897 * 58.67779 * 22 20 19 43 43 H 1.48500 * 109.99984 * 179.97438 * 22 20 19 44 44 H 1.08999 * 109.47395 * 264.04648 * 25 24 23 45 45 H 1.09001 * 109.47392 * 24.05166 * 25 24 23 46 46 H 1.09005 * 109.47075 * 144.05187 * 25 24 23 47 47 H 1.09002 * 113.61402 * 139.98054 * 26 6 5 48 48 H 1.09000 * 113.61131 * 270.88372 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0788 0.3237 5 6 3.3755 1.3719 0.7045 6 6 3.8227 2.3181 -0.4223 7 1 3.6235 3.3694 -0.2144 8 6 5.2542 2.0680 -0.9007 9 6 5.6425 3.1339 -1.9273 10 7 7.0131 2.8940 -2.3858 11 6 7.5718 3.7140 -3.2979 12 8 6.9382 4.6526 -3.7404 13 6 8.9533 3.4726 -3.7596 14 6 9.7348 2.4729 -3.1680 15 7 10.9651 2.2424 -3.5646 16 6 11.5296 2.9414 -4.5429 17 7 12.7689 2.8969 -5.1287 18 6 12.8589 3.8449 -6.1129 19 6 11.7058 4.5255 -6.1998 20 6 11.3959 5.6499 -7.1542 21 8 11.4209 6.8930 -6.4500 22 14 12.6702 5.6801 -8.5130 23 6 10.8083 3.9695 -5.1842 24 6 9.4984 4.2379 -4.7942 25 6 8.6964 5.3251 -5.4618 26 6 2.7534 1.6488 -1.3018 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.9088 0.4214 0.7138 31 1 3.3383 1.8472 1.6848 32 1 5.3166 1.0814 -1.3599 33 1 5.9351 2.1169 -0.0509 34 1 5.5800 4.1204 -1.4681 35 1 4.9616 3.0850 -2.7771 36 1 7.5186 2.1454 -2.0324 37 1 9.3171 1.8791 -2.3684 38 1 13.4785 2.2834 -4.8818 39 1 13.7293 4.0188 -6.7282 40 1 10.4071 5.4971 -7.5867 41 1 12.2724 7.0948 -6.0383 42 1 12.6762 4.3811 -9.2326 43 1 12.3754 6.7842 -9.4613 44 1 8.7629 6.2397 -4.8726 45 1 9.0920 5.5071 -6.4611 46 1 7.6539 5.0150 -5.5348 47 1 2.2140 2.3476 -1.9412 48 1 3.1166 0.7739 -1.8410 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:00 Heat of formation + Delta-G solvation = -16.072780 kcal Electronic energy + Delta-G solvation = -29602.124211 eV Core-core repulsion = 25432.173280 eV Total energy + Delta-G solvation = -4169.950932 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.85511 -41.03816 -40.45947 -38.78223 -37.73910 -37.53822 -36.15741 -34.96822 -32.44624 -31.83605 -30.56475 -28.96045 -27.71648 -26.72903 -26.51046 -25.60296 -24.46578 -23.79321 -22.54597 -21.85177 -20.67588 -20.45863 -19.30413 -18.81500 -17.71808 -17.57606 -17.50403 -17.03536 -16.83539 -16.63550 -16.48047 -16.19520 -16.02303 -15.71229 -15.52500 -15.38914 -15.14838 -14.80802 -14.63692 -14.15696 -14.01723 -13.77500 -13.73180 -13.59939 -13.43641 -13.37299 -13.29449 -13.08183 -12.95911 -12.38668 -12.31873 -12.25694 -12.02021 -11.72926 -11.51297 -11.24668 -11.19210 -11.13665 -10.54109 -10.40565 -10.19740 -10.18179 -9.62724 -9.11131 -4.98641 -0.36446 -0.08967 1.35249 1.43149 1.65736 1.75012 1.78894 2.05458 2.07173 2.74102 2.89785 3.30466 3.46610 3.50387 3.61115 3.61857 3.64218 3.72107 3.76515 3.83059 3.90536 4.08646 4.14158 4.23981 4.28300 4.31034 4.34856 4.35351 4.47119 4.52351 4.58626 4.63206 4.67436 4.68826 4.77821 4.82402 4.84746 4.87357 4.97802 4.98852 5.03420 5.12556 5.18026 5.22388 5.27927 5.34662 5.44319 5.47067 5.72981 6.23205 6.30730 6.45652 6.82020 6.88788 7.14561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.049 3.951 4 H 0.096 0.904 5 C -0.129 4.129 6 C -0.099 4.099 7 H 0.102 0.898 8 C -0.109 4.109 9 C 0.123 3.877 10 N -0.714 5.714 11 C 0.567 3.433 12 O -0.569 6.569 13 C -0.242 4.242 14 C 0.179 3.821 15 N -0.515 5.515 16 C 0.287 3.713 17 N -0.559 5.559 18 C 0.097 3.903 19 C -0.207 4.207 20 C -0.050 4.050 21 O -0.558 6.558 22 Si 0.805 3.195 23 C -0.166 4.166 24 C 0.058 3.942 25 C -0.110 4.110 26 C -0.154 4.154 27 H 0.046 0.954 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.413 0.587 37 H 0.195 0.805 38 H 0.439 0.561 39 H 0.232 0.768 40 H 0.095 0.905 41 H 0.394 0.606 42 H -0.280 1.280 43 H -0.305 1.305 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 -2.046 1.832 6.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.009 4.009 4 H 0.114 0.886 5 C -0.166 4.166 6 C -0.118 4.118 7 H 0.121 0.879 8 C -0.147 4.147 9 C 0.000 4.000 10 N -0.367 5.367 11 C 0.355 3.645 12 O -0.449 6.449 13 C -0.249 4.249 14 C 0.011 3.989 15 N -0.228 5.228 16 C 0.053 3.947 17 N -0.166 5.166 18 C -0.030 4.030 19 C -0.215 4.215 20 C -0.159 4.159 21 O -0.365 6.365 22 Si 0.709 3.291 23 C -0.173 4.173 24 C 0.050 3.950 25 C -0.166 4.166 26 C -0.192 4.192 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.251 0.749 37 H 0.211 0.789 38 H 0.281 0.719 39 H 0.248 0.752 40 H 0.112 0.888 41 H 0.244 0.756 42 H -0.207 1.207 43 H -0.234 1.234 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.360 -2.327 0.860 5.906 hybrid contribution -1.252 0.062 0.092 1.257 sum 4.108 -2.265 0.952 4.786 Atomic orbital electron populations 1.22920 0.80158 1.03522 1.00599 1.87908 1.20957 1.28631 1.94771 1.23934 0.94526 0.84940 0.97496 0.88633 1.23260 0.94719 1.00237 0.98416 1.22190 0.93596 0.99719 0.96254 0.87941 1.21678 0.96272 0.98354 0.98385 1.21378 0.81472 0.99557 0.97595 1.45802 1.16338 1.31615 1.42906 1.18028 0.85588 0.81892 0.78955 1.90742 1.64774 1.31830 1.57598 1.20516 0.96515 1.04163 1.03715 1.22961 0.86977 0.92630 0.96352 1.66516 1.13126 1.28945 1.14237 1.18787 0.88202 0.93998 0.93692 1.41620 1.11420 1.33024 1.30551 1.22407 0.99735 0.89093 0.91745 1.20818 0.94488 1.03869 1.02297 1.24802 1.08470 0.82097 1.00542 1.86496 1.40868 1.36004 1.73161 0.94067 0.83502 0.76666 0.74874 1.19776 0.94667 1.00898 1.02009 1.20072 0.91690 0.92522 0.90761 1.20974 0.99844 0.95875 0.99910 1.23603 0.97838 1.00719 0.97001 0.93556 0.89099 0.93145 0.89391 0.90064 0.90362 0.89368 0.91920 0.92472 0.74893 0.78894 0.71913 0.75153 0.88763 0.75618 1.20705 1.23354 0.90791 0.91122 0.90173 0.91201 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 10.85 113.37 1.23 1.23 16 2 O -0.40 -1.95 10.71 -148.98 -1.60 -3.55 16 3 C 0.05 0.02 4.31 31.12 0.13 0.15 16 4 H 0.10 -0.18 7.87 -2.39 -0.02 -0.20 16 5 C -0.13 0.27 7.47 31.12 0.23 0.50 16 6 C -0.10 0.35 3.65 -10.27 -0.04 0.31 16 7 H 0.10 -0.45 8.13 -2.39 -0.02 -0.47 16 8 C -0.11 0.54 5.16 30.59 0.16 0.70 16 9 C 0.12 -0.04 5.67 86.38 0.49 0.45 16 10 N -0.71 -0.14 5.51 -466.15 -2.57 -2.71 16 11 C 0.57 4.37 7.72 86.73 0.67 5.04 16 12 O -0.57 -8.47 13.49 -3.97 -0.05 -8.53 16 13 C -0.24 -1.66 5.89 -20.00 -0.12 -1.78 16 14 C 0.18 0.49 10.67 85.20 0.91 1.40 16 15 N -0.51 -2.77 10.37 -191.75 -1.99 -4.76 16 16 C 0.29 1.32 8.42 134.02 1.13 2.45 16 17 N -0.56 1.95 6.04 -192.25 -1.16 0.79 16 18 C 0.10 -0.62 10.44 82.97 0.87 0.25 16 19 C -0.21 -0.06 5.57 -18.63 -0.10 -0.17 16 20 C -0.05 0.01 2.06 71.24 0.15 0.16 16 21 O -0.56 -0.55 12.88 -148.98 -1.92 -2.47 16 22 Si 0.80 -4.09 30.77 68.60 2.11 -1.98 16 23 C -0.17 -1.08 6.16 -20.19 -0.12 -1.20 16 24 C 0.06 0.54 5.98 -19.25 -0.12 0.42 16 25 C -0.11 -1.13 8.69 71.24 0.62 -0.51 16 26 C -0.15 0.10 7.46 31.12 0.23 0.33 16 27 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.09 -0.08 8.10 -2.39 -0.02 -0.10 16 31 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 32 H 0.08 -0.41 7.84 -2.38 -0.02 -0.43 16 33 H 0.09 -0.63 8.14 -2.39 -0.02 -0.64 16 34 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.41 -2.52 6.55 -92.71 -0.61 -3.12 16 37 H 0.19 -1.08 6.43 -2.91 -0.02 -1.10 16 38 H 0.44 -4.05 8.96 -92.71 -0.83 -4.88 16 39 H 0.23 -3.83 6.36 -2.91 -0.02 -3.85 16 40 H 0.10 0.32 6.05 -2.39 -0.01 0.30 16 41 H 0.39 -3.10 8.70 -74.05 -0.64 -3.74 16 42 H -0.28 0.22 7.11 99.48 0.71 0.93 16 43 H -0.31 -1.15 7.11 99.48 0.71 -0.44 16 44 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.61 5.05 -2.39 -0.01 0.59 16 46 H 0.08 1.05 5.95 -2.38 -0.01 1.04 16 47 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.08 0.09 7.90 -2.39 -0.02 0.07 16 Total: 0.00 -27.30 387.31 -1.87 -29.18 By element: Atomic # 1 Polarization: -14.68 SS G_CDS: -1.02 Total: -15.69 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.32 Total: 9.73 kcal Atomic # 7 Polarization: -0.97 SS G_CDS: -5.72 Total: -6.68 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -3.57 Total: -14.54 kcal Atomic # 14 Polarization: -4.09 SS G_CDS: 2.11 Total: -1.98 kcal Total: -27.30 -1.87 -29.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.102 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds