Wall clock time and date at job start Sun Mar 7 2021 05:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99816 * 2 1 4 4 H 1.08998 * 112.85219 * 18.80037 * 3 2 1 5 5 C 1.53783 * 113.61288 * 149.99898 * 3 2 1 6 6 C 1.53774 * 87.08155 * 140.06242 * 5 3 2 7 7 H 1.09002 * 113.61558 * 89.20120 * 6 5 3 8 8 C 1.53007 * 113.61892 * 220.01835 * 6 5 3 9 9 C 1.52992 * 109.47335 * 183.46949 * 8 6 5 10 10 N 1.46495 * 109.47080 * 179.97438 * 9 8 6 11 11 C 1.34784 * 120.00035 * 180.02562 * 10 9 8 12 12 O 1.21508 * 119.99893 * 359.97438 * 11 10 9 13 13 C 1.48172 * 119.99686 * 180.02562 * 11 10 9 14 14 N 1.32714 * 119.72725 * 359.97438 * 13 11 10 15 15 C 1.31517 * 121.64417 * 179.97438 * 14 13 11 16 16 C 1.38556 * 120.90505 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.32679 * 179.97438 * 16 15 14 18 18 O 1.42903 * 109.47131 * 119.99863 * 17 16 15 19 19 Si 1.86305 * 109.47185 * 0.02562 * 17 16 15 20 20 C 1.38624 * 119.35010 * 0.25425 * 16 15 14 21 21 C 1.38594 * 118.48902 * 359.50888 * 20 16 15 22 22 C 1.53779 * 87.17470 * 334.61034 * 6 5 3 23 23 H 1.08998 * 109.47144 * 300.00272 * 1 2 3 24 24 H 1.09002 * 109.47082 * 59.99766 * 1 2 3 25 25 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 26 26 H 1.09002 * 113.61341 * 25.51330 * 5 3 2 27 27 H 1.09002 * 113.69174 * 254.62543 * 5 3 2 28 28 H 1.09002 * 109.46369 * 63.46942 * 8 6 5 29 29 H 1.08998 * 109.46693 * 303.47572 * 8 6 5 30 30 H 1.09011 * 109.46969 * 60.00170 * 9 8 6 31 31 H 1.08998 * 109.47739 * 299.99983 * 9 8 6 32 32 H 0.96994 * 120.00386 * 0.02562 * 10 9 8 33 33 H 1.08001 * 119.54975 * 179.97438 * 15 14 13 34 34 H 1.08999 * 109.47358 * 240.00223 * 17 16 15 35 35 H 0.96700 * 114.00311 * 300.00591 * 18 17 16 36 36 H 1.48497 * 110.00233 * 179.97438 * 19 17 16 37 37 H 1.48492 * 109.99800 * 301.31995 * 19 17 16 38 38 H 1.08002 * 120.75676 * 179.72298 * 20 16 15 39 39 H 1.07998 * 120.46748 * 180.22258 * 21 20 16 40 40 H 1.08997 * 113.61767 * 139.93856 * 22 6 5 41 41 H 1.09002 * 113.61361 * 270.83765 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0790 0.3237 5 6 3.3755 1.3720 0.7046 6 6 3.8220 2.3199 -0.4209 7 1 3.6222 3.3708 -0.2117 8 6 5.2538 2.0714 -0.8998 9 6 5.6279 3.1160 -1.9531 10 7 6.9990 2.8784 -2.4111 11 6 7.5464 3.6817 -3.3448 12 8 6.9025 4.6028 -3.8069 13 6 8.9329 3.4410 -3.8084 14 7 9.6310 2.4331 -3.3003 15 6 10.8640 2.1848 -3.6847 16 6 11.4833 2.9723 -4.6419 17 6 12.8968 2.6764 -5.0723 18 8 12.9200 2.4005 -6.4742 19 14 13.5334 1.1956 -4.1380 20 6 10.7919 4.0387 -5.1954 21 6 9.4923 4.2736 -4.7751 22 6 2.7530 1.6533 -1.3028 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.9094 0.4217 0.7126 27 1 3.3395 1.8455 1.6857 28 1 5.3231 1.0748 -1.3359 29 1 5.9378 2.1465 -0.0545 30 1 5.5585 4.1127 -1.5170 31 1 4.9439 3.0409 -2.7984 32 1 7.5129 2.1430 -2.0426 33 1 11.4013 1.3557 -3.2484 34 1 13.5291 3.5389 -4.8612 35 1 12.3778 1.6435 -6.7352 36 1 14.9265 0.8930 -4.5539 37 1 13.4845 1.4573 -2.6772 38 1 11.2542 4.6700 -5.9398 39 1 8.9230 5.0934 -5.1877 40 1 2.2138 2.3540 -1.9402 41 1 3.1165 0.7802 -1.8447 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16488024_13287726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:26 Heat of formation + Delta-G solvation = -52.052986 kcal Electronic energy + Delta-G solvation = -22380.512450 eV Core-core repulsion = 18841.954730 eV Total energy + Delta-G solvation = -3538.557721 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.85018 -40.67033 -40.06640 -37.99301 -37.53598 -35.94395 -33.91638 -33.01935 -31.65684 -28.15296 -27.56775 -26.75062 -25.52447 -25.01112 -23.63377 -22.61085 -21.77691 -20.56805 -19.24679 -18.66699 -17.80011 -17.61318 -16.85652 -16.81654 -16.63612 -16.41438 -16.26729 -16.08028 -15.97102 -15.65542 -15.14661 -14.93977 -14.43120 -14.33752 -14.22119 -13.71791 -13.57745 -13.43659 -13.41642 -13.02210 -12.65983 -12.46267 -12.32812 -12.17386 -11.79863 -11.61179 -11.34799 -11.23275 -11.09630 -10.70383 -10.63814 -10.40833 -10.31912 -10.02944 -5.19181 -0.57778 0.04341 1.08466 1.47185 1.65512 1.83534 2.02623 2.70433 2.84636 2.95325 3.23331 3.41280 3.42189 3.56392 3.63103 3.71946 3.76359 3.82727 3.92009 4.02013 4.11858 4.22307 4.24309 4.28646 4.40113 4.46555 4.51494 4.53803 4.60050 4.76242 4.79669 4.79808 4.83463 4.91266 4.93987 4.98061 5.06665 5.20332 5.33703 5.37118 5.40748 6.28743 6.32392 6.36948 6.62908 7.15445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.058 3.942 4 H 0.087 0.913 5 C -0.131 4.131 6 C -0.107 4.107 7 H 0.096 0.904 8 C -0.119 4.119 9 C 0.118 3.882 10 N -0.711 5.711 11 C 0.571 3.429 12 O -0.530 6.530 13 C 0.081 3.919 14 N -0.453 5.453 15 C 0.103 3.897 16 C -0.151 4.151 17 C -0.067 4.067 18 O -0.536 6.536 19 Si 0.688 3.312 20 C -0.053 4.053 21 C -0.108 4.108 22 C -0.152 4.152 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.412 0.588 33 H 0.164 0.836 34 H 0.121 0.879 35 H 0.381 0.619 36 H -0.249 1.249 37 H -0.253 1.253 38 H 0.148 0.852 39 H 0.153 0.847 40 H 0.070 0.930 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -2.766 0.973 2.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.297 6.297 3 C 0.001 3.999 4 H 0.105 0.895 5 C -0.169 4.169 6 C -0.125 4.125 7 H 0.114 0.886 8 C -0.157 4.157 9 C -0.006 4.006 10 N -0.363 5.363 11 C 0.355 3.645 12 O -0.405 6.405 13 C -0.057 4.057 14 N -0.164 5.164 15 C -0.057 4.057 16 C -0.153 4.153 17 C -0.178 4.178 18 O -0.342 6.342 19 Si 0.589 3.411 20 C -0.079 4.079 21 C -0.129 4.129 22 C -0.190 4.190 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.248 0.752 33 H 0.181 0.819 34 H 0.138 0.862 35 H 0.229 0.771 36 H -0.174 1.174 37 H -0.177 1.177 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.089 0.911 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.063 -2.579 1.854 3.177 hybrid contribution 0.339 1.084 -0.493 1.238 sum 0.275 -1.496 1.361 2.041 Atomic orbital electron populations 1.22807 0.81032 1.02932 0.99986 1.87950 1.19777 1.27352 1.94581 1.23757 0.93944 0.85345 0.96902 0.89516 1.23274 0.95378 1.00297 0.97927 1.22228 0.93648 0.99604 0.97069 0.88551 1.21740 0.96413 0.99159 0.98346 1.21458 0.81964 0.99439 0.97705 1.45844 1.15864 1.33250 1.41302 1.17847 0.84890 0.82167 0.79560 1.90819 1.61968 1.30835 1.56914 1.21179 0.94843 0.93512 0.96179 1.67509 1.07564 1.16566 1.24779 1.22621 0.90674 0.98191 0.94180 1.21658 0.98443 0.97036 0.98181 1.25051 0.94586 1.09710 0.88482 1.86535 1.72371 1.54469 1.20784 0.94749 0.83727 0.83644 0.78949 1.21559 0.93268 0.95512 0.97545 1.22233 0.95444 0.99639 0.95569 1.23645 0.97352 1.00950 0.97066 0.93973 0.93967 0.89584 0.88896 0.90801 0.90679 0.90715 0.91115 0.90984 0.75177 0.81925 0.86195 0.77113 1.17354 1.17728 0.83436 0.82967 0.91101 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.09 16 2 O -0.38 -0.77 10.72 -35.23 -0.38 -1.15 16 3 C 0.06 0.00 4.31 -25.83 -0.11 -0.11 16 4 H 0.09 -0.09 7.87 -51.93 -0.41 -0.50 16 5 C -0.13 0.12 7.47 -25.92 -0.19 -0.07 16 6 C -0.11 0.18 3.64 -89.81 -0.33 -0.15 16 7 H 0.10 -0.20 8.14 -51.93 -0.42 -0.62 16 8 C -0.12 0.23 5.15 -26.73 -0.14 0.09 16 9 C 0.12 -0.02 5.67 -4.05 -0.02 -0.04 16 10 N -0.71 -0.52 5.55 -61.15 -0.34 -0.85 16 11 C 0.57 1.81 7.81 -12.18 -0.10 1.71 16 12 O -0.53 -3.26 16.32 5.36 0.09 -3.17 16 13 C 0.08 0.16 6.75 -83.01 -0.56 -0.40 16 14 N -0.45 -0.43 9.54 -9.80 -0.09 -0.53 16 15 C 0.10 -0.08 9.84 -17.57 -0.17 -0.26 16 16 C -0.15 0.17 5.40 -104.36 -0.56 -0.40 16 17 C -0.07 0.13 2.83 36.00 0.10 0.23 16 18 O -0.54 0.75 12.78 -35.23 -0.45 0.30 16 19 Si 0.69 -1.85 29.82 -169.99 -5.07 -6.92 16 20 C -0.05 0.03 9.77 -39.31 -0.38 -0.36 16 21 C -0.11 -0.11 9.63 -39.05 -0.38 -0.48 16 22 C -0.15 0.11 7.48 -25.83 -0.19 -0.09 16 23 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 24 H 0.04 -0.04 8.14 -51.93 -0.42 -0.46 16 25 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 26 H 0.09 -0.03 8.10 -51.93 -0.42 -0.46 16 27 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.07 -0.15 7.87 -51.93 -0.41 -0.55 16 29 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 30 H 0.07 0.03 8.14 -51.92 -0.42 -0.39 16 31 H 0.07 0.05 8.14 -51.93 -0.42 -0.38 16 32 H 0.41 -0.31 7.80 -40.82 -0.32 -0.63 16 33 H 0.16 -0.52 4.89 -52.49 -0.26 -0.78 16 34 H 0.12 -0.21 7.96 -51.93 -0.41 -0.62 16 35 H 0.38 -1.96 8.70 45.56 0.40 -1.57 16 36 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 37 H -0.25 0.12 7.11 56.52 0.40 0.53 16 38 H 0.15 -0.26 8.06 -52.49 -0.42 -0.69 16 39 H 0.15 0.10 7.64 -52.49 -0.40 -0.30 16 40 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 41 H 0.09 0.00 7.92 -51.93 -0.41 -0.41 16 LS Contribution 345.64 15.07 5.21 5.21 Total: 0.00 -7.53 345.64 -9.04 -16.57 By element: Atomic # 1 Polarization: -4.14 SS G_CDS: -6.07 Total: -10.21 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.94 Total: 0.76 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -0.43 Total: -1.38 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.74 Total: -4.03 kcal Atomic # 14 Polarization: -1.85 SS G_CDS: -5.07 Total: -6.92 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -7.53 -9.04 -16.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_13287726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.485 kcal (2) G-P(sol) polarization free energy of solvation -7.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds