Wall clock time and date at job start Sun Mar 7 2021 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42896 * 113.99958 * 2 1 4 4 H 1.09002 * 112.85462 * 341.19381 * 3 2 1 5 5 C 1.53956 * 113.74384 * 112.40455 * 3 2 1 6 6 C 1.53778 * 87.02468 * 139.94157 * 5 3 2 7 7 H 1.09000 * 113.61324 * 89.22605 * 6 5 3 8 8 C 1.52992 * 113.61727 * 220.04570 * 6 5 3 9 9 C 1.52997 * 109.47482 * 274.13766 * 8 6 5 10 10 N 1.46505 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 8 12 12 O 1.21548 * 120.00715 * 0.02562 * 11 10 9 13 13 C 1.47848 * 119.99742 * 179.97438 * 11 10 9 14 14 C 1.39525 * 120.55897 * 0.02562 * 13 11 10 15 15 N 1.31690 * 120.56597 * 180.02562 * 14 13 11 16 16 C 1.31920 * 121.88022 * 359.97272 * 15 14 13 17 17 C 1.38349 * 121.08050 * 0.02562 * 16 15 14 18 18 C 1.50709 * 120.34782 * 179.97438 * 17 16 15 19 19 O 1.42897 * 109.46862 * 120.00096 * 18 17 16 20 20 Si 1.86297 * 109.47117 * 359.97438 * 18 17 16 21 21 C 1.38354 * 119.30664 * 359.74133 * 17 16 15 22 22 C 1.53784 * 87.17274 * 334.63907 * 6 5 3 23 23 H 1.09009 * 109.46930 * 59.99943 * 1 2 3 24 24 H 1.09001 * 109.47579 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47368 * 300.00559 * 1 2 3 26 26 H 1.08996 * 113.61467 * 25.42154 * 5 3 2 27 27 H 1.09000 * 113.66378 * 254.47293 * 5 3 2 28 28 H 1.09002 * 109.47103 * 154.13519 * 8 6 5 29 29 H 1.08998 * 109.46862 * 34.14331 * 8 6 5 30 30 H 1.09002 * 109.47153 * 59.99783 * 9 8 6 31 31 H 1.09001 * 109.46832 * 299.99974 * 9 8 6 32 32 H 0.96996 * 119.99606 * 0.02562 * 10 9 8 33 33 H 1.08002 * 119.71115 * 0.02562 * 14 13 11 34 34 H 1.08006 * 119.45835 * 180.02562 * 16 15 14 35 35 H 1.08999 * 109.46695 * 239.99727 * 18 17 16 36 36 H 0.96705 * 113.99617 * 180.02562 * 19 18 17 37 37 H 1.48500 * 110.00319 * 298.68458 * 20 18 17 38 38 H 1.48506 * 109.99876 * 60.00177 * 20 18 17 39 39 H 1.07997 * 120.86003 * 180.25673 * 21 17 16 40 40 H 1.08998 * 113.61407 * 139.93222 * 22 6 5 41 41 H 1.08996 * 113.61156 * 270.76088 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7530 1.6533 1.3029 6 6 3.8220 2.3199 0.4211 7 1 3.6221 3.3707 0.2118 8 6 5.2537 2.0713 0.8999 9 6 5.6278 3.1161 1.9532 10 7 6.9985 2.8776 2.4122 11 6 7.5457 3.6808 3.3459 12 8 6.9020 4.6027 3.8076 13 6 8.9288 3.4399 3.8095 14 6 9.6782 2.3848 3.2879 15 7 10.9099 2.1698 3.7011 16 6 11.4819 2.9321 4.6133 17 6 10.8058 3.9982 5.1792 18 6 11.4750 4.8581 6.2204 19 8 11.5340 6.2084 5.7567 20 14 13.2018 4.2302 6.5279 21 6 9.5105 4.2697 4.7758 22 6 3.3756 1.3719 -0.7045 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 3.1164 0.7801 1.8447 27 1 2.2137 2.3540 1.9402 28 1 5.9377 2.1465 0.0546 29 1 5.3230 1.0748 1.3359 30 1 4.9437 3.0409 2.7985 31 1 5.5584 4.1126 1.5171 32 1 7.5124 2.1422 2.0435 33 1 9.2442 1.7390 2.5389 34 1 12.4946 2.7205 4.9233 35 1 10.9033 4.8170 7.1476 36 1 11.9538 6.8195 6.3777 37 1 13.1521 2.8375 7.0410 38 1 13.9918 4.2807 5.2714 39 1 8.9609 5.0980 5.1979 40 1 3.3381 1.8458 -1.6854 41 1 3.9105 0.4222 -0.7133 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_13287814.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:40 Heat of formation + Delta-G solvation = -51.167969 kcal Electronic energy + Delta-G solvation = -22449.177088 eV Core-core repulsion = 18910.657744 eV Total energy + Delta-G solvation = -3538.519343 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.02162 -40.69537 -40.23969 -37.87292 -37.59790 -36.13948 -33.97749 -33.61943 -31.53005 -27.81134 -27.35094 -26.79976 -26.43587 -24.70805 -23.79050 -22.63780 -21.67937 -20.49564 -19.15543 -18.59266 -18.25717 -17.98785 -17.60193 -16.89809 -16.81436 -16.47454 -16.15237 -16.00862 -15.73260 -15.45188 -15.09748 -15.06805 -14.60673 -14.43752 -14.29787 -13.85129 -13.66585 -13.45117 -13.38649 -13.02019 -12.66695 -12.43850 -12.29040 -12.18162 -11.77375 -11.71263 -11.37295 -11.23940 -11.20476 -10.85301 -10.65692 -10.42035 -10.28560 -10.16868 -4.97583 -0.74633 -0.15757 1.21968 1.52592 1.63837 1.86796 1.92444 2.47264 2.87790 2.92122 3.16727 3.39264 3.46459 3.56041 3.59738 3.62258 3.69512 3.80211 3.88510 3.99134 4.05637 4.14147 4.25645 4.26635 4.43088 4.45404 4.51498 4.59866 4.62969 4.70438 4.76979 4.81403 4.83081 4.85595 4.95515 4.99767 5.09842 5.14830 5.24245 5.27655 5.44554 6.27245 6.29618 6.45848 6.84315 6.94237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.049 3.951 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.099 4.099 7 H 0.103 0.897 8 C -0.110 4.110 9 C 0.120 3.880 10 N -0.709 5.709 11 C 0.565 3.435 12 O -0.572 6.572 13 C -0.193 4.193 14 C 0.143 3.857 15 N -0.496 5.496 16 C 0.109 3.891 17 C -0.141 4.141 18 C -0.081 4.081 19 O -0.565 6.565 20 Si 0.781 3.219 21 C 0.001 3.999 22 C -0.129 4.129 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.416 0.584 33 H 0.197 0.803 34 H 0.159 0.841 35 H 0.101 0.899 36 H 0.408 0.592 37 H -0.279 1.279 38 H -0.290 1.290 39 H 0.147 0.853 40 H 0.080 0.920 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 0.102 0.971 1.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.009 4.009 4 H 0.114 0.886 5 C -0.192 4.192 6 C -0.118 4.118 7 H 0.121 0.879 8 C -0.148 4.148 9 C -0.003 4.003 10 N -0.361 5.361 11 C 0.351 3.649 12 O -0.452 6.452 13 C -0.198 4.198 14 C -0.016 4.016 15 N -0.203 5.203 16 C -0.047 4.047 17 C -0.143 4.143 18 C -0.191 4.191 19 O -0.376 6.376 20 Si 0.686 3.314 21 C -0.025 4.025 22 C -0.167 4.167 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.065 0.935 26 H 0.102 0.898 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.254 0.746 33 H 0.214 0.786 34 H 0.175 0.825 35 H 0.119 0.881 36 H 0.260 0.740 37 H -0.205 1.205 38 H -0.218 1.218 39 H 0.165 0.835 40 H 0.099 0.901 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.182 -0.979 0.210 1.549 hybrid contribution -1.140 0.507 0.036 1.248 sum 0.043 -0.472 0.246 0.534 Atomic orbital electron populations 1.22922 0.80136 1.03529 1.00614 1.87905 1.20973 1.28619 1.94761 1.23964 0.94508 0.84943 0.97485 0.88647 1.23631 0.97799 1.00740 0.96984 1.22188 0.93517 0.99776 0.96281 0.87885 1.21684 0.96424 0.98564 0.98079 1.21457 0.81179 0.99870 0.97758 1.45820 1.16514 1.32886 1.40867 1.18088 0.85619 0.81815 0.79367 1.90793 1.63680 1.32479 1.58237 1.21097 0.96030 1.00419 1.02234 1.23500 0.88757 0.93348 0.95963 1.67728 1.12008 1.28393 1.12213 1.22886 0.99341 0.91021 0.91448 1.20725 0.95147 0.97996 1.00429 1.24853 1.11844 0.86052 0.96303 1.86437 1.84696 1.17300 1.49119 0.93866 0.74524 0.80553 0.82489 1.21702 0.93364 0.95933 0.91505 1.23257 0.94772 1.00220 0.98417 0.93163 0.89104 0.93508 0.89812 0.91082 0.89382 0.90197 0.92037 0.91693 0.74620 0.78597 0.82478 0.88104 0.74038 1.20539 1.21769 0.83497 0.90105 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.40 -1.75 10.72 -148.98 -1.60 -3.35 16 3 C 0.05 -0.01 4.31 31.18 0.13 0.12 16 4 H 0.10 -0.23 7.87 -2.39 -0.02 -0.25 16 5 C -0.15 0.23 7.48 31.18 0.23 0.47 16 6 C -0.10 0.43 3.64 -10.27 -0.04 0.39 16 7 H 0.10 -0.55 8.14 -2.39 -0.02 -0.56 16 8 C -0.11 0.65 5.15 30.59 0.16 0.81 16 9 C 0.12 -0.18 5.67 86.38 0.49 0.31 16 10 N -0.71 0.81 5.51 -465.97 -2.57 -1.75 16 11 C 0.56 3.52 7.78 86.79 0.68 4.20 16 12 O -0.57 -8.28 16.42 -3.87 -0.06 -8.34 16 13 C -0.19 -0.94 5.89 -19.99 -0.12 -1.05 16 14 C 0.14 0.25 10.71 85.02 0.91 1.16 16 15 N -0.50 -3.02 10.35 -194.76 -2.01 -5.04 16 16 C 0.11 0.62 9.84 84.71 0.83 1.45 16 17 C -0.14 -0.65 5.43 -19.81 -0.11 -0.76 16 18 C -0.08 0.13 2.82 71.24 0.20 0.33 16 19 O -0.56 0.43 12.75 -148.98 -1.90 -1.47 16 20 Si 0.78 -3.21 29.82 68.60 2.05 -1.16 16 21 C 0.00 0.01 9.31 22.73 0.21 0.22 16 22 C -0.13 0.34 7.48 31.12 0.23 0.57 16 23 H 0.05 -0.12 8.14 -2.38 -0.02 -0.14 16 24 H 0.09 -0.19 8.14 -2.39 -0.02 -0.20 16 25 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 26 H 0.08 0.01 7.92 -2.39 -0.02 -0.01 16 27 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 28 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 29 H 0.08 -0.51 7.87 -2.39 -0.02 -0.53 16 30 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.42 -3.14 6.54 -92.71 -0.61 -3.75 16 33 H 0.20 -1.32 6.42 -2.91 -0.02 -1.34 16 34 H 0.16 0.56 4.88 -2.91 -0.01 0.55 16 35 H 0.10 -0.56 7.96 -2.39 -0.02 -0.58 16 36 H 0.41 -4.73 8.74 -74.05 -0.65 -5.37 16 37 H -0.28 -0.15 7.11 99.48 0.71 0.56 16 38 H -0.29 -0.92 7.11 99.48 0.71 -0.21 16 39 H 0.15 1.08 7.74 -2.91 -0.02 1.06 16 40 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.09 -0.13 8.10 -2.39 -0.02 -0.15 16 Total: 0.00 -22.63 343.45 -1.21 -23.84 By element: Atomic # 1 Polarization: -12.01 SS G_CDS: -0.16 Total: -12.17 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 5.05 Total: 9.44 kcal Atomic # 7 Polarization: -2.21 SS G_CDS: -4.58 Total: -6.79 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -3.56 Total: -13.16 kcal Atomic # 14 Polarization: -3.21 SS G_CDS: 2.05 Total: -1.16 kcal Total: -22.63 -1.21 -23.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_13287814.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.324 kcal (2) G-P(sol) polarization free energy of solvation -22.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds