Wall clock time and date at job start Sun Mar 7 2021 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00029 * 2 1 4 4 H 1.09001 * 112.84425 * 341.19688 * 3 2 1 5 5 C 1.53780 * 113.61749 * 112.50383 * 3 2 1 6 6 C 1.53781 * 87.08184 * 139.97991 * 5 3 2 7 7 H 1.09004 * 113.68711 * 89.12577 * 6 5 3 8 8 C 1.52995 * 113.61392 * 220.01864 * 6 5 3 9 9 C 1.53007 * 109.47215 * 272.49775 * 8 6 5 10 10 N 1.46491 * 109.46964 * 179.97438 * 9 8 6 11 11 C 1.34783 * 119.99946 * 180.02562 * 10 9 8 12 12 O 1.21609 * 119.99653 * 0.02562 * 11 10 9 13 13 C 1.47375 * 120.00404 * 180.02562 * 11 10 9 14 14 C 1.36414 * 127.19575 * 180.02562 * 13 11 10 15 15 C 1.50699 * 125.79823 * 359.94905 * 14 13 11 16 16 O 1.33657 * 108.40072 * 179.97438 * 14 13 11 17 17 C 1.34219 * 110.90375 * 359.76456 * 16 14 13 18 18 C 1.50696 * 125.43533 * 180.26374 * 17 16 14 19 19 O 1.42896 * 109.47655 * 245.14572 * 18 17 16 20 20 Si 1.86302 * 109.47254 * 5.14921 * 18 17 16 21 21 C 1.34177 * 109.12710 * 0.39546 * 17 16 14 22 22 C 1.53779 * 113.61192 * 210.00075 * 3 2 1 23 23 H 1.09004 * 109.47343 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47140 * 299.99998 * 1 2 3 25 25 H 1.08995 * 109.47606 * 59.99811 * 1 2 3 26 26 H 1.08998 * 113.61372 * 25.42932 * 5 3 2 27 27 H 1.09000 * 113.61243 * 254.53371 * 5 3 2 28 28 H 1.08998 * 109.47232 * 152.49981 * 8 6 5 29 29 H 1.09005 * 109.47362 * 32.49564 * 8 6 5 30 30 H 1.08998 * 109.46852 * 59.99973 * 9 8 6 31 31 H 1.08997 * 109.46931 * 300.00426 * 9 8 6 32 32 H 0.97001 * 120.00566 * 359.97438 * 10 9 8 33 33 H 1.08995 * 109.47629 * 90.00165 * 15 14 13 34 34 H 1.09005 * 109.46808 * 209.99760 * 15 14 13 35 35 H 1.08999 * 109.47327 * 329.99094 * 15 14 13 36 36 H 1.09007 * 109.46745 * 125.14612 * 18 17 16 37 37 H 0.96705 * 114.00151 * 60.00041 * 19 18 17 38 38 H 1.48501 * 110.00201 * 179.97438 * 20 18 17 39 39 H 1.48502 * 109.99692 * 301.31684 * 20 18 17 40 40 H 1.08002 * 127.02646 * 179.89664 * 21 17 16 41 41 H 1.09005 * 113.61070 * 105.46908 * 22 3 2 42 42 H 1.08997 * 113.69560 * 334.57526 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0788 -0.3238 5 6 2.7534 1.6490 1.3017 6 6 3.8227 2.3182 0.4221 7 1 3.6235 3.3695 0.2142 8 6 5.2542 2.0680 0.9005 9 6 5.6425 3.1341 1.9271 10 7 7.0130 2.8941 2.3856 11 6 7.5714 3.7136 3.2985 12 8 6.9374 4.6519 3.7417 13 6 8.9503 3.4727 3.7594 14 6 9.6546 4.2031 4.6712 15 6 9.1532 5.4232 5.3998 16 8 10.8650 3.6530 4.8082 17 6 10.9925 2.5737 4.0205 18 6 12.2192 1.7041 3.9219 19 8 12.7742 1.8102 2.6094 20 14 13.4788 2.2625 5.1758 21 6 9.8543 2.3944 3.3329 22 6 3.3755 1.3719 -0.7045 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 3.1166 0.7741 1.8410 27 1 2.2140 2.3477 1.9411 28 1 5.9351 2.1170 0.0508 29 1 5.3167 1.0815 1.3599 30 1 4.9617 3.0852 2.7769 31 1 5.5800 4.1206 1.4678 32 1 7.5184 2.1451 2.0329 33 1 8.6746 5.1195 6.3308 34 1 9.9912 6.0842 5.6210 35 1 8.4313 5.9487 4.7746 36 1 11.9462 0.6672 4.1182 37 1 13.0403 2.7076 2.3662 38 1 14.6933 1.4124 5.0891 39 1 13.8357 3.6844 4.9386 40 1 9.6436 1.6145 2.6161 41 1 3.3383 1.8470 -1.6849 42 1 3.9098 0.4219 -0.7147 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16488024_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:44 Heat of formation + Delta-G solvation = -78.587691 kcal Electronic energy + Delta-G solvation = -23339.399555 eV Core-core repulsion = 19674.661063 eV Total energy + Delta-G solvation = -3664.738492 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.72468 -40.75407 -40.18271 -38.20107 -37.54530 -35.88842 -34.13470 -33.15910 -31.69990 -29.40494 -27.78355 -26.80024 -26.26674 -25.24930 -23.84550 -22.71067 -21.99233 -20.79200 -20.42508 -18.99806 -17.98866 -17.68921 -17.57767 -16.99296 -16.68283 -16.65856 -16.41210 -16.03242 -15.93712 -15.74858 -15.48365 -14.76499 -14.63105 -14.23754 -14.10607 -13.91795 -13.85331 -13.67594 -13.44434 -13.42986 -13.04582 -12.96797 -12.82948 -12.46458 -12.33893 -12.09665 -11.81238 -11.57729 -11.32852 -11.01787 -10.86118 -10.70828 -10.41928 -10.06578 -9.55089 -5.01617 0.32455 0.84816 1.09824 1.42876 1.68811 1.89295 2.20955 2.40049 2.85341 3.08708 3.34673 3.40791 3.54955 3.74470 3.75766 3.78231 3.81136 4.01755 4.14159 4.20285 4.23943 4.26412 4.38712 4.43029 4.45680 4.52706 4.56282 4.58921 4.66738 4.75561 4.78194 4.78740 4.81201 4.90579 4.97114 5.05581 5.12185 5.18827 5.22826 5.35530 5.45816 5.91435 6.18764 6.27684 6.52487 7.27088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.059 3.941 4 H 0.087 0.913 5 C -0.152 4.152 6 C -0.106 4.106 7 H 0.096 0.904 8 C -0.119 4.119 9 C 0.121 3.879 10 N -0.725 5.725 11 C 0.592 3.408 12 O -0.540 6.540 13 C -0.253 4.253 14 C 0.095 3.905 15 C -0.087 4.087 16 O -0.168 6.168 17 C -0.055 4.055 18 C -0.034 4.034 19 O -0.521 6.521 20 Si 0.701 3.299 21 C -0.148 4.148 22 C -0.132 4.132 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.401 0.599 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.381 0.619 38 H -0.249 1.249 39 H -0.256 1.256 40 H 0.158 0.842 41 H 0.073 0.927 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 -0.875 0.294 1.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.297 6.297 3 C 0.001 3.999 4 H 0.105 0.895 5 C -0.190 4.190 6 C -0.125 4.125 7 H 0.115 0.885 8 C -0.157 4.157 9 C -0.002 4.002 10 N -0.377 5.377 11 C 0.380 3.620 12 O -0.419 6.419 13 C -0.258 4.258 14 C 0.042 3.958 15 C -0.143 4.143 16 O -0.066 6.066 17 C -0.103 4.103 18 C -0.144 4.144 19 O -0.328 6.328 20 Si 0.600 3.400 21 C -0.167 4.167 22 C -0.169 4.169 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.235 0.765 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.155 0.845 37 H 0.229 0.771 38 H -0.173 1.173 39 H -0.180 1.180 40 H 0.176 0.824 41 H 0.092 0.908 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.088 -0.603 0.904 1.090 hybrid contribution -0.139 0.207 -1.469 1.490 sum -0.227 -0.395 -0.565 0.726 Atomic orbital electron populations 1.22806 0.81019 1.02940 0.99994 1.87949 1.19793 1.27357 1.94590 1.23727 0.93931 0.85370 0.96912 0.89472 1.23615 0.97343 1.00934 0.97073 1.22226 0.93648 0.99603 0.97060 0.88528 1.21745 0.96399 0.98990 0.98547 1.21388 0.82044 0.99119 0.97674 1.45786 1.16087 1.31895 1.43902 1.17158 0.84538 0.81785 0.78513 1.90777 1.63354 1.30354 1.57420 1.21133 0.96773 1.01537 1.06335 1.22920 0.81766 0.95468 0.95654 1.20702 1.01894 0.90808 1.00850 1.83684 1.32732 1.35870 1.54270 1.22546 0.99493 0.91018 0.97263 1.24358 0.95641 1.01388 0.92965 1.86661 1.81464 1.34512 1.30162 0.94375 0.78750 0.80300 0.86542 1.22588 0.92140 0.99869 1.02104 1.23282 0.95406 1.00291 0.97942 0.89582 0.93967 0.93958 0.89015 0.91104 0.90844 0.90816 0.91148 0.91270 0.76467 0.88806 0.90056 0.87135 0.84481 0.77080 1.17278 1.17981 0.82442 0.90813 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.09 16 2 O -0.38 -0.79 10.71 -35.23 -0.38 -1.17 16 3 C 0.06 0.00 4.31 -25.92 -0.11 -0.11 16 4 H 0.09 -0.09 7.87 -51.93 -0.41 -0.50 16 5 C -0.15 0.10 7.46 -25.92 -0.19 -0.09 16 6 C -0.11 0.17 3.65 -89.81 -0.33 -0.15 16 7 H 0.10 -0.20 8.13 -51.93 -0.42 -0.62 16 8 C -0.12 0.24 5.16 -26.73 -0.14 0.10 16 9 C 0.12 -0.03 5.66 -4.04 -0.02 -0.05 16 10 N -0.73 -0.26 5.55 -61.40 -0.34 -0.60 16 11 C 0.59 1.83 7.81 -12.54 -0.10 1.73 16 12 O -0.54 -3.19 14.85 5.27 0.08 -3.11 16 13 C -0.25 -0.54 6.31 -103.28 -0.65 -1.19 16 14 C 0.10 0.17 7.37 -34.97 -0.26 -0.09 16 15 C -0.09 0.00 9.89 36.01 0.36 0.35 16 16 O -0.17 -0.22 8.90 7.63 0.07 -0.16 16 17 C -0.06 -0.02 6.18 -35.74 -0.22 -0.24 16 18 C -0.03 0.04 2.97 36.00 0.11 0.14 16 19 O -0.52 -0.01 12.88 -35.23 -0.45 -0.46 16 20 Si 0.70 -0.84 32.09 -169.99 -5.46 -6.29 16 21 C -0.15 -0.07 10.48 -37.45 -0.39 -0.46 16 22 C -0.13 0.11 7.47 -25.92 -0.19 -0.08 16 23 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 24 H 0.04 -0.04 8.14 -51.93 -0.42 -0.46 16 25 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 26 H 0.09 0.00 7.90 -51.93 -0.41 -0.41 16 27 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 28 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 29 H 0.07 -0.15 7.84 -51.93 -0.41 -0.56 16 30 H 0.07 0.06 8.14 -51.93 -0.42 -0.37 16 31 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.40 -0.73 7.64 -40.82 -0.31 -1.04 16 33 H 0.09 -0.08 8.14 -51.93 -0.42 -0.51 16 34 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.11 0.15 6.49 -51.93 -0.34 -0.19 16 36 H 0.14 -0.36 7.96 -51.93 -0.41 -0.78 16 37 H 0.38 -0.97 8.70 45.56 0.40 -0.57 16 38 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 39 H -0.26 -0.40 7.11 56.52 0.40 0.01 16 40 H 0.16 -0.25 7.74 -52.49 -0.41 -0.65 16 41 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 42 H 0.09 -0.03 8.10 -51.93 -0.42 -0.45 16 LS Contribution 354.58 15.07 5.34 5.34 Total: 0.00 -7.30 354.58 -8.75 -16.06 By element: Atomic # 1 Polarization: -3.99 SS G_CDS: -6.57 Total: -10.56 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.05 Total: 0.94 kcal Atomic # 7 Polarization: -0.26 SS G_CDS: -0.34 Total: -0.60 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.69 Total: -4.90 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: -5.46 Total: -6.29 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -7.30 -8.75 -16.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.531 kcal (2) G-P(sol) polarization free energy of solvation -7.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds