Wall clock time and date at job start Sun Mar 7 2021 05:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00029 * 2 1 4 4 H 1.09001 * 112.84425 * 341.19688 * 3 2 1 5 5 C 1.53780 * 113.61749 * 112.50383 * 3 2 1 6 6 C 1.53781 * 87.08184 * 139.97991 * 5 3 2 7 7 H 1.09004 * 113.68711 * 89.12577 * 6 5 3 8 8 C 1.52995 * 113.61392 * 220.01864 * 6 5 3 9 9 C 1.53007 * 109.47215 * 272.49775 * 8 6 5 10 10 N 1.46491 * 109.46964 * 179.97438 * 9 8 6 11 11 C 1.34783 * 119.99946 * 180.02562 * 10 9 8 12 12 O 1.21609 * 119.99653 * 0.02562 * 11 10 9 13 13 C 1.47375 * 120.00404 * 180.02562 * 11 10 9 14 14 C 1.36414 * 127.19575 * 180.02562 * 13 11 10 15 15 C 1.50699 * 125.79823 * 359.94905 * 14 13 11 16 16 O 1.33657 * 108.40072 * 179.97438 * 14 13 11 17 17 C 1.34219 * 110.90375 * 359.76456 * 16 14 13 18 18 C 1.50696 * 125.43533 * 180.26374 * 17 16 14 19 19 O 1.42896 * 109.47655 * 245.14572 * 18 17 16 20 20 Si 1.86302 * 109.47254 * 5.14921 * 18 17 16 21 21 C 1.34177 * 109.12710 * 0.39546 * 17 16 14 22 22 C 1.53779 * 113.61192 * 210.00075 * 3 2 1 23 23 H 1.09004 * 109.47343 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47140 * 299.99998 * 1 2 3 25 25 H 1.08995 * 109.47606 * 59.99811 * 1 2 3 26 26 H 1.08998 * 113.61372 * 25.42932 * 5 3 2 27 27 H 1.09000 * 113.61243 * 254.53371 * 5 3 2 28 28 H 1.08998 * 109.47232 * 152.49981 * 8 6 5 29 29 H 1.09005 * 109.47362 * 32.49564 * 8 6 5 30 30 H 1.08998 * 109.46852 * 59.99973 * 9 8 6 31 31 H 1.08997 * 109.46931 * 300.00426 * 9 8 6 32 32 H 0.97001 * 120.00566 * 359.97438 * 10 9 8 33 33 H 1.08995 * 109.47629 * 90.00165 * 15 14 13 34 34 H 1.09005 * 109.46808 * 209.99760 * 15 14 13 35 35 H 1.08999 * 109.47327 * 329.99094 * 15 14 13 36 36 H 1.09007 * 109.46745 * 125.14612 * 18 17 16 37 37 H 0.96705 * 114.00151 * 60.00041 * 19 18 17 38 38 H 1.48501 * 110.00201 * 179.97438 * 20 18 17 39 39 H 1.48502 * 109.99692 * 301.31684 * 20 18 17 40 40 H 1.08002 * 127.02646 * 179.89664 * 21 17 16 41 41 H 1.09005 * 113.61070 * 105.46908 * 22 3 2 42 42 H 1.08997 * 113.69560 * 334.57526 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3136 2.0788 -0.3238 5 6 2.7534 1.6490 1.3017 6 6 3.8227 2.3182 0.4221 7 1 3.6235 3.3695 0.2142 8 6 5.2542 2.0680 0.9005 9 6 5.6425 3.1341 1.9271 10 7 7.0130 2.8941 2.3856 11 6 7.5714 3.7136 3.2985 12 8 6.9374 4.6519 3.7417 13 6 8.9503 3.4727 3.7594 14 6 9.6546 4.2031 4.6712 15 6 9.1532 5.4232 5.3998 16 8 10.8650 3.6530 4.8082 17 6 10.9925 2.5737 4.0205 18 6 12.2192 1.7041 3.9219 19 8 12.7742 1.8102 2.6094 20 14 13.4788 2.2625 5.1758 21 6 9.8543 2.3944 3.3329 22 6 3.3755 1.3719 -0.7045 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 3.1166 0.7741 1.8410 27 1 2.2140 2.3477 1.9411 28 1 5.9351 2.1170 0.0508 29 1 5.3167 1.0815 1.3599 30 1 4.9617 3.0852 2.7769 31 1 5.5800 4.1206 1.4678 32 1 7.5184 2.1451 2.0329 33 1 8.6746 5.1195 6.3308 34 1 9.9912 6.0842 5.6210 35 1 8.4313 5.9487 4.7746 36 1 11.9462 0.6672 4.1182 37 1 13.0403 2.7076 2.3662 38 1 14.6933 1.4124 5.0891 39 1 13.8357 3.6844 4.9386 40 1 9.6436 1.6145 2.6161 41 1 3.3383 1.8470 -1.6849 42 1 3.9098 0.4219 -0.7147 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_13308374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:43 Heat of formation + Delta-G solvation = -77.164943 kcal Electronic energy + Delta-G solvation = -23339.337860 eV Core-core repulsion = 19674.661063 eV Total energy + Delta-G solvation = -3664.676797 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.77792 -40.78077 -40.29117 -38.15788 -37.56425 -35.99382 -34.21439 -33.17088 -31.69917 -29.39094 -27.75433 -26.74592 -26.27747 -25.23910 -23.89638 -22.67374 -22.06087 -20.81814 -20.41233 -19.00400 -18.02860 -17.73113 -17.57301 -17.02809 -16.74024 -16.66809 -16.44719 -16.03067 -15.90829 -15.75706 -15.49942 -14.84647 -14.71641 -14.26052 -14.16506 -13.92416 -13.83040 -13.62217 -13.42571 -13.37839 -13.01148 -12.93838 -12.83530 -12.41042 -12.27811 -12.17948 -11.74506 -11.56267 -11.26431 -11.10743 -10.96139 -10.73354 -10.41059 -10.17489 -9.59680 -4.94186 0.21585 0.81774 1.16888 1.41900 1.70351 1.91257 2.15147 2.23378 2.89673 3.17222 3.38292 3.48404 3.62390 3.71800 3.75878 3.81807 3.89096 4.07771 4.11187 4.26985 4.28771 4.38310 4.46209 4.47538 4.52677 4.59329 4.60756 4.63620 4.67121 4.77901 4.82562 4.83698 4.86730 4.96754 5.02356 5.10909 5.13756 5.20687 5.26404 5.39947 5.45246 5.87841 6.30594 6.33165 6.46453 7.13614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.050 3.950 4 H 0.097 0.903 5 C -0.153 4.153 6 C -0.099 4.099 7 H 0.103 0.897 8 C -0.108 4.108 9 C 0.123 3.877 10 N -0.714 5.714 11 C 0.586 3.414 12 O -0.576 6.576 13 C -0.270 4.270 14 C 0.085 3.915 15 C -0.085 4.085 16 O -0.173 6.173 17 C -0.058 4.058 18 C -0.032 4.032 19 O -0.534 6.534 20 Si 0.769 3.231 21 C -0.146 4.146 22 C -0.130 4.130 23 H 0.090 0.910 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.413 0.587 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.159 0.841 37 H 0.390 0.610 38 H -0.282 1.282 39 H -0.295 1.295 40 H 0.178 0.822 41 H 0.080 0.920 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 -1.498 -0.110 1.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.008 4.008 4 H 0.114 0.886 5 C -0.191 4.191 6 C -0.118 4.118 7 H 0.121 0.879 8 C -0.146 4.146 9 C 0.000 4.000 10 N -0.365 5.365 11 C 0.375 3.625 12 O -0.458 6.458 13 C -0.274 4.274 14 C 0.032 3.968 15 C -0.141 4.141 16 O -0.070 6.070 17 C -0.106 4.106 18 C -0.142 4.142 19 O -0.342 6.342 20 Si 0.674 3.326 21 C -0.165 4.165 22 C -0.167 4.167 23 H 0.109 0.891 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.249 0.751 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.176 0.824 37 H 0.240 0.760 38 H -0.209 1.209 39 H -0.222 1.222 40 H 0.196 0.804 41 H 0.099 0.901 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.051 -1.256 0.483 1.347 hybrid contribution -0.159 0.415 -1.360 1.431 sum -0.109 -0.842 -0.877 1.221 Atomic orbital electron populations 1.22923 0.80122 1.03534 1.00626 1.87909 1.20990 1.28608 1.94768 1.23925 0.94449 0.84975 0.97454 0.88555 1.23595 0.97735 1.00729 0.96991 1.22191 0.93489 0.99754 0.96325 0.87882 1.21662 0.96322 0.98357 0.98269 1.21380 0.81532 0.99456 0.97634 1.45737 1.16264 1.31592 1.42913 1.17392 0.84874 0.81600 0.78641 1.90753 1.64280 1.31932 1.58847 1.21224 0.96657 1.02539 1.07016 1.23227 0.81924 0.95869 0.95795 1.20707 1.02149 0.90547 1.00674 1.83686 1.32525 1.36232 1.54566 1.22844 0.99971 0.90799 0.96994 1.24517 0.94892 1.02269 0.92472 1.86639 1.81480 1.35551 1.30571 0.93524 0.76875 0.76490 0.85759 1.22814 0.91610 0.99793 1.02323 1.23263 0.94852 1.00202 0.98419 0.89101 0.93483 0.93160 0.89849 0.91018 0.89792 0.90474 0.92267 0.91993 0.75066 0.87968 0.88464 0.88627 0.82399 0.76004 1.20876 1.22167 0.80439 0.90125 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.40 -1.81 10.71 -148.98 -1.60 -3.41 16 3 C 0.05 0.00 4.31 31.12 0.13 0.14 16 4 H 0.10 -0.22 7.87 -2.39 -0.02 -0.24 16 5 C -0.15 0.17 7.46 31.12 0.23 0.40 16 6 C -0.10 0.36 3.65 -10.27 -0.04 0.32 16 7 H 0.10 -0.48 8.13 -2.38 -0.02 -0.50 16 8 C -0.11 0.50 5.16 30.59 0.16 0.66 16 9 C 0.12 -0.03 5.66 86.38 0.49 0.46 16 10 N -0.71 -0.51 5.55 -466.43 -2.59 -3.10 16 11 C 0.59 4.02 7.81 86.65 0.68 4.70 16 12 O -0.58 -7.64 14.85 -4.06 -0.06 -7.70 16 13 C -0.27 -1.21 6.31 -18.99 -0.12 -1.33 16 14 C 0.09 0.34 7.37 25.26 0.19 0.53 16 15 C -0.08 -0.07 9.89 71.24 0.70 0.64 16 16 O -0.17 -0.44 8.90 4.38 0.04 -0.40 16 17 C -0.06 0.00 6.18 24.76 0.15 0.15 16 18 C -0.03 0.10 2.97 71.23 0.21 0.31 16 19 O -0.53 0.48 12.88 -148.98 -1.92 -1.44 16 20 Si 0.77 -1.87 32.09 68.60 2.20 0.33 16 21 C -0.15 -0.02 10.48 23.65 0.25 0.23 16 22 C -0.13 0.27 7.47 31.12 0.23 0.50 16 23 H 0.09 -0.18 8.14 -2.38 -0.02 -0.20 16 24 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 25 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.08 0.05 7.90 -2.39 -0.02 0.03 16 27 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.08 -0.37 7.84 -2.38 -0.02 -0.39 16 30 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.41 -1.82 7.64 -92.71 -0.71 -2.53 16 33 H 0.10 -0.13 8.14 -2.39 -0.02 -0.14 16 34 H 0.10 -0.29 8.14 -2.38 -0.02 -0.31 16 35 H 0.10 0.41 6.49 -2.39 -0.02 0.39 16 36 H 0.16 -1.15 7.96 -2.38 -0.02 -1.17 16 37 H 0.39 -2.17 8.70 -74.05 -0.64 -2.82 16 38 H -0.28 -0.89 7.11 99.48 0.71 -0.19 16 39 H -0.29 -1.20 7.11 99.48 0.71 -0.49 16 40 H 0.18 -0.85 7.74 -2.91 -0.02 -0.87 16 41 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 42 H 0.09 -0.07 8.10 -2.39 -0.02 -0.09 16 Total: 0.00 -17.59 354.58 0.29 -17.30 By element: Atomic # 1 Polarization: -10.22 SS G_CDS: -0.29 Total: -10.50 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 4.50 Total: 8.91 kcal Atomic # 7 Polarization: -0.51 SS G_CDS: -2.59 Total: -3.10 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -3.54 Total: -12.95 kcal Atomic # 14 Polarization: -1.87 SS G_CDS: 2.20 Total: 0.33 kcal Total: -17.59 0.29 -17.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_13308374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.860 kcal (2) G-P(sol) polarization free energy of solvation -17.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds