Wall clock time and date at job start Sun Mar 7 2021 05:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00062 * 2 1 4 4 H 1.09000 * 112.91058 * 18.74736 * 3 2 1 5 5 C 1.53786 * 113.61586 * 149.99622 * 3 2 1 6 6 C 1.53781 * 87.17350 * 140.02292 * 5 3 2 7 7 H 1.08999 * 113.61567 * 89.07405 * 6 5 3 8 8 C 1.52991 * 113.61529 * 219.97788 * 6 5 3 9 9 C 1.53001 * 109.47417 * 184.99744 * 8 6 5 10 10 N 1.46501 * 109.47608 * 179.97438 * 9 8 6 11 11 C 1.34772 * 120.00431 * 180.02562 * 10 9 8 12 12 O 1.21596 * 119.99713 * 0.02562 * 11 10 9 13 13 C 1.47557 * 120.00096 * 180.02562 * 11 10 9 14 14 C 1.39830 * 120.00192 * 359.71193 * 13 11 10 15 15 C 1.36567 * 119.99879 * 179.78865 * 14 13 11 16 16 C 1.39820 * 119.99866 * 0.47616 * 15 14 13 17 17 C 1.47560 * 119.99717 * 179.76105 * 16 15 14 18 18 C 1.34981 * 125.27559 * 0.02562 * 17 16 15 19 19 C 1.37800 * 114.69692 * 179.97438 * 18 17 16 20 20 C 1.33734 * 115.08680 * 0.02562 * 19 18 17 21 21 C 1.50699 * 125.12173 * 179.97438 * 20 19 18 22 22 O 1.42897 * 109.47155 * 299.99672 * 21 20 19 23 23 Si 1.86302 * 109.47208 * 179.97438 * 21 20 19 24 24 S 1.75864 * 109.76048 * 359.77048 * 20 19 18 25 25 C 1.39823 * 120.00342 * 359.77969 * 16 15 14 26 26 C 1.36562 * 120.00336 * 359.97438 * 25 16 15 27 27 C 1.53781 * 87.08070 * 334.52830 * 6 5 3 28 28 H 1.09003 * 109.46699 * 60.00030 * 1 2 3 29 29 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47037 * 300.00188 * 1 2 3 31 31 H 1.09002 * 113.61357 * 25.43209 * 5 3 2 32 32 H 1.09002 * 113.61608 * 254.61371 * 5 3 2 33 33 H 1.08997 * 109.47550 * 304.99814 * 8 6 5 34 34 H 1.09002 * 109.47334 * 65.00084 * 8 6 5 35 35 H 1.08993 * 109.47272 * 300.00352 * 9 8 6 36 36 H 1.09005 * 109.46912 * 60.00294 * 9 8 6 37 37 H 0.97000 * 119.99284 * 0.02562 * 10 9 8 38 38 H 1.08003 * 120.00232 * 0.03389 * 14 13 11 39 39 H 1.07999 * 119.99820 * 180.23304 * 15 14 13 40 40 H 1.07993 * 122.65081 * 359.93618 * 18 17 16 41 41 H 1.08003 * 122.45364 * 179.97438 * 19 18 17 42 42 H 1.08994 * 109.47097 * 59.99875 * 21 20 19 43 43 H 0.96704 * 114.00021 * 179.97438 * 22 21 20 44 44 H 1.48498 * 110.00191 * 59.99878 * 23 21 20 45 45 H 1.48496 * 110.00188 * 181.32021 * 23 21 20 46 46 H 1.08000 * 119.99754 * 179.97438 * 25 16 15 47 47 H 1.07994 * 120.00431 * 179.97438 * 26 25 16 48 48 H 1.09005 * 113.61471 * 139.98321 * 27 6 5 49 49 H 1.08996 * 113.61178 * 270.79663 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 0.3227 5 6 3.3756 1.3718 0.7046 6 6 3.8247 2.3191 -0.4205 7 1 3.6238 3.3701 -0.2126 8 6 5.2570 2.0694 -0.8967 9 6 5.6470 3.1363 -1.9217 10 7 7.0188 2.8976 -2.3772 11 6 7.5791 3.7185 -3.2874 12 8 6.9462 4.6576 -3.7302 13 6 8.9606 3.4777 -3.7466 14 6 9.6905 2.4013 -3.2330 15 6 10.9675 2.1759 -3.6613 16 6 11.5486 3.0273 -4.6059 17 6 12.9303 2.7869 -5.0647 18 6 13.7269 1.7811 -4.6455 19 6 14.9798 1.7617 -5.2190 20 6 15.2152 2.7397 -6.1003 21 6 16.5038 2.9330 -6.8573 22 8 17.5748 3.1304 -5.9321 23 14 16.3561 4.4240 -7.9644 24 16 13.7924 3.7628 -6.2471 25 6 10.8206 4.1069 -5.1156 26 6 9.5419 4.3294 -4.6912 27 6 2.7569 1.6507 -1.3025 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9088 0.4212 0.7139 32 1 3.3381 1.8458 1.6855 33 1 5.9364 2.1176 -0.0457 34 1 5.3202 1.0833 -1.3568 35 1 4.9676 3.0881 -2.7726 36 1 5.5838 4.1224 -1.4616 37 1 7.5237 2.1486 -2.0237 38 1 9.2430 1.7458 -2.5006 39 1 11.5300 1.3423 -3.2673 40 1 13.4079 1.0497 -3.9178 41 1 15.7178 1.0123 -4.9739 42 1 16.7053 2.0496 -7.4631 43 1 18.4368 3.2613 -6.3503 44 1 16.0811 5.6355 -7.1508 45 1 17.6091 4.6069 -8.7401 46 1 11.2697 4.7647 -5.8449 47 1 8.9797 5.1634 -5.0845 48 1 2.2186 2.3501 -1.9422 49 1 3.1214 0.7772 -1.8430 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16488024_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:48 Heat of formation + Delta-G solvation = -29.135353 kcal Electronic energy + Delta-G solvation = -29081.753740 eV Core-core repulsion = 24874.788160 eV Total energy + Delta-G solvation = -4206.965580 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.138 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.30447 -40.58580 -39.79942 -38.94566 -37.60051 -37.48057 -35.93505 -33.68892 -32.46092 -31.62668 -30.43523 -27.85262 -27.26379 -26.74794 -25.59010 -24.40729 -23.86423 -23.25162 -22.62006 -21.56750 -20.55916 -20.08915 -19.10509 -18.71826 -18.28699 -17.63297 -17.15341 -16.94317 -16.73037 -16.52206 -16.25086 -16.04288 -15.89694 -15.63131 -15.54507 -15.37877 -14.97279 -14.87292 -14.48477 -14.40039 -14.13636 -14.04828 -13.72305 -13.52624 -13.43392 -13.32112 -13.28229 -13.06921 -12.99191 -12.71161 -12.46556 -12.36763 -12.34401 -12.15586 -11.81804 -11.59090 -11.58342 -11.33276 -10.88608 -10.80521 -10.51701 -10.41785 -10.18825 -10.08653 -9.51584 -8.99345 -5.13919 -0.85389 0.27530 0.34428 0.39775 0.75661 1.15430 1.50893 1.61715 1.84456 2.05684 2.11419 2.84770 2.87970 3.20154 3.39532 3.43962 3.54562 3.64533 3.69149 3.74672 3.75122 3.80197 3.82462 4.00802 4.16614 4.20038 4.22788 4.25818 4.31717 4.38605 4.43055 4.45659 4.51639 4.54106 4.58775 4.63125 4.75523 4.77776 4.79445 4.89583 4.89792 4.94738 5.00553 5.04537 5.10933 5.18204 5.24263 5.29103 5.31814 5.34917 5.40052 5.47912 5.73772 6.27430 6.29891 6.46356 7.21888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.058 3.942 4 H 0.088 0.912 5 C -0.131 4.131 6 C -0.107 4.107 7 H 0.097 0.903 8 C -0.119 4.119 9 C 0.119 3.881 10 N -0.728 5.728 11 C 0.558 3.442 12 O -0.534 6.534 13 C -0.137 4.137 14 C -0.078 4.078 15 C -0.110 4.110 16 C 0.014 3.986 17 C -0.150 4.150 18 C -0.118 4.118 19 C -0.105 4.105 20 C -0.173 4.173 21 C -0.034 4.034 22 O -0.532 6.532 23 Si 0.645 3.355 24 S 0.141 5.859 25 C -0.120 4.120 26 C -0.049 4.049 27 C -0.152 4.152 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.400 0.600 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.087 0.913 43 H 0.383 0.617 44 H -0.235 1.235 45 H -0.238 1.238 46 H 0.131 0.869 47 H 0.141 0.859 48 H 0.070 0.930 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -3.326 -0.138 3.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.297 6.297 3 C 0.000 4.000 4 H 0.105 0.895 5 C -0.169 4.169 6 C -0.126 4.126 7 H 0.115 0.885 8 C -0.157 4.157 9 C -0.004 4.004 10 N -0.380 5.380 11 C 0.346 3.654 12 O -0.412 6.412 13 C -0.140 4.140 14 C -0.097 4.097 15 C -0.130 4.130 16 C 0.012 3.988 17 C -0.267 4.267 18 C -0.148 4.148 19 C -0.135 4.135 20 C -0.290 4.290 21 C -0.146 4.146 22 O -0.340 6.340 23 Si 0.543 3.457 24 S 0.408 5.592 25 C -0.139 4.139 26 C -0.068 4.068 27 C -0.190 4.190 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.105 0.895 43 H 0.231 0.769 44 H -0.159 1.159 45 H -0.161 1.161 46 H 0.149 0.851 47 H 0.159 0.841 48 H 0.089 0.911 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.503 -0.778 -1.113 1.448 hybrid contribution 1.547 -1.661 1.447 2.692 sum 1.044 -2.439 0.334 2.674 Atomic orbital electron populations 1.22810 0.80996 1.02947 1.00008 1.87944 1.19813 1.27344 1.94579 1.23770 0.93935 0.85369 0.96906 0.89456 1.23279 0.95397 1.00265 0.97948 1.22224 0.93638 0.99629 0.97084 0.88510 1.21745 0.96426 0.98958 0.98551 1.21411 0.82009 0.99206 0.97777 1.45924 1.16108 1.31886 1.44102 1.18211 0.86193 0.82119 0.78892 1.90811 1.63715 1.30053 1.56590 1.20013 0.94395 0.98495 1.01126 1.20959 0.94241 0.96071 0.98452 1.20867 0.95223 0.99639 0.97246 1.18290 0.90064 0.94955 0.95485 1.23068 0.97708 1.01766 1.04176 1.20359 0.93394 0.98964 1.02098 1.19969 0.97113 0.99559 0.96864 1.23817 0.98441 1.00821 1.05919 1.24006 0.85181 1.09448 0.95993 1.86604 1.18470 1.94310 1.34604 0.95281 0.89991 0.78223 0.82182 1.84105 1.04787 1.29959 1.40332 1.20977 0.94627 0.97471 1.00831 1.20944 0.94171 0.97885 0.93773 1.23665 0.97343 1.00933 0.97064 0.93948 0.89573 0.93952 0.88940 0.90805 0.90794 0.90793 0.91086 0.91179 0.76440 0.85234 0.84801 0.83710 0.83777 0.89509 0.76865 1.15902 1.16107 0.85130 0.84072 0.91103 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.09 16 2 O -0.38 -0.76 10.72 -35.23 -0.38 -1.13 16 3 C 0.06 0.00 4.32 -25.77 -0.11 -0.12 16 4 H 0.09 -0.10 7.87 -51.93 -0.41 -0.51 16 5 C -0.13 0.14 7.46 -25.92 -0.19 -0.05 16 6 C -0.11 0.19 3.65 -89.81 -0.33 -0.13 16 7 H 0.10 -0.21 8.13 -51.93 -0.42 -0.63 16 8 C -0.12 0.28 5.16 -26.74 -0.14 0.15 16 9 C 0.12 -0.05 5.67 -4.04 -0.02 -0.08 16 10 N -0.73 0.18 5.50 -61.34 -0.34 -0.16 16 11 C 0.56 1.57 7.76 -12.46 -0.10 1.47 16 12 O -0.53 -3.55 16.33 5.28 0.09 -3.46 16 13 C -0.14 -0.20 5.88 -104.90 -0.62 -0.81 16 14 C -0.08 0.07 9.48 -39.59 -0.38 -0.31 16 15 C -0.11 0.06 9.48 -39.59 -0.38 -0.31 16 16 C 0.01 0.01 5.88 -104.91 -0.62 -0.60 16 17 C -0.15 -0.16 6.37 -36.94 -0.24 -0.39 16 18 C -0.12 -0.05 9.64 -40.90 -0.39 -0.44 16 19 C -0.10 -0.09 10.00 -41.32 -0.41 -0.51 16 20 C -0.17 -0.19 5.76 -35.89 -0.21 -0.40 16 21 C -0.03 0.01 2.95 36.01 0.11 0.12 16 22 O -0.53 -0.38 12.83 -35.23 -0.45 -0.83 16 23 Si 0.64 -0.48 30.96 -169.99 -5.26 -5.74 16 24 S 0.14 0.11 19.46 -107.50 -2.09 -1.98 16 25 C -0.12 -0.12 9.54 -39.59 -0.38 -0.50 16 26 C -0.05 -0.08 9.53 -39.59 -0.38 -0.46 16 27 C -0.15 0.11 7.48 -25.78 -0.19 -0.08 16 28 H 0.04 -0.04 8.14 -51.93 -0.42 -0.47 16 29 H 0.09 -0.10 8.14 -51.93 -0.42 -0.52 16 30 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.09 -0.05 8.10 -51.93 -0.42 -0.48 16 32 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 33 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 34 H 0.07 -0.19 7.84 -51.93 -0.41 -0.59 16 35 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 36 H 0.07 0.03 8.14 -51.93 -0.42 -0.39 16 37 H 0.40 -1.20 6.48 -40.82 -0.26 -1.46 16 38 H 0.13 -0.49 6.38 -52.48 -0.34 -0.83 16 39 H 0.13 -0.35 6.74 -52.49 -0.35 -0.71 16 40 H 0.15 -0.26 6.88 -52.49 -0.36 -0.62 16 41 H 0.14 -0.03 8.06 -52.48 -0.42 -0.45 16 42 H 0.09 -0.20 7.96 -51.93 -0.41 -0.61 16 43 H 0.38 -1.32 8.74 45.56 0.40 -0.92 16 44 H -0.24 -0.56 7.11 56.52 0.40 -0.15 16 45 H -0.24 -0.12 7.11 56.52 0.40 0.28 16 46 H 0.13 -0.03 7.26 -52.49 -0.38 -0.41 16 47 H 0.14 0.25 7.64 -52.49 -0.40 -0.15 16 48 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 49 H 0.09 -0.01 7.89 -51.93 -0.41 -0.42 16 LS Contribution 418.00 15.07 6.30 6.30 Total: 0.00 -8.74 418.00 -13.19 -21.93 By element: Atomic # 1 Polarization: -5.38 SS G_CDS: -7.18 Total: -12.56 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -3.87 Total: -2.37 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: -0.34 Total: -0.16 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.74 Total: -5.42 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: -5.26 Total: -5.74 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.09 Total: -1.98 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -8.74 -13.19 -21.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.203 kcal (2) G-P(sol) polarization free energy of solvation -8.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds