Wall clock time and date at job start Sun Mar 7 2021 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42891 * 114.00062 * 2 1 4 4 H 1.09000 * 112.91058 * 18.74736 * 3 2 1 5 5 C 1.53786 * 113.61586 * 149.99622 * 3 2 1 6 6 C 1.53781 * 87.17350 * 140.02292 * 5 3 2 7 7 H 1.08999 * 113.61567 * 89.07405 * 6 5 3 8 8 C 1.52991 * 113.61529 * 219.97788 * 6 5 3 9 9 C 1.53001 * 109.47417 * 184.99744 * 8 6 5 10 10 N 1.46501 * 109.47608 * 179.97438 * 9 8 6 11 11 C 1.34772 * 120.00431 * 180.02562 * 10 9 8 12 12 O 1.21596 * 119.99713 * 0.02562 * 11 10 9 13 13 C 1.47557 * 120.00096 * 180.02562 * 11 10 9 14 14 C 1.39830 * 120.00192 * 359.71193 * 13 11 10 15 15 C 1.36567 * 119.99879 * 179.78865 * 14 13 11 16 16 C 1.39820 * 119.99866 * 0.47616 * 15 14 13 17 17 C 1.47560 * 119.99717 * 179.76105 * 16 15 14 18 18 C 1.34981 * 125.27559 * 0.02562 * 17 16 15 19 19 C 1.37800 * 114.69692 * 179.97438 * 18 17 16 20 20 C 1.33734 * 115.08680 * 0.02562 * 19 18 17 21 21 C 1.50699 * 125.12173 * 179.97438 * 20 19 18 22 22 O 1.42897 * 109.47155 * 299.99672 * 21 20 19 23 23 Si 1.86302 * 109.47208 * 179.97438 * 21 20 19 24 24 S 1.75864 * 109.76048 * 359.77048 * 20 19 18 25 25 C 1.39823 * 120.00342 * 359.77969 * 16 15 14 26 26 C 1.36562 * 120.00336 * 359.97438 * 25 16 15 27 27 C 1.53781 * 87.08070 * 334.52830 * 6 5 3 28 28 H 1.09003 * 109.46699 * 60.00030 * 1 2 3 29 29 H 1.09002 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47037 * 300.00188 * 1 2 3 31 31 H 1.09002 * 113.61357 * 25.43209 * 5 3 2 32 32 H 1.09002 * 113.61608 * 254.61371 * 5 3 2 33 33 H 1.08997 * 109.47550 * 304.99814 * 8 6 5 34 34 H 1.09002 * 109.47334 * 65.00084 * 8 6 5 35 35 H 1.08993 * 109.47272 * 300.00352 * 9 8 6 36 36 H 1.09005 * 109.46912 * 60.00294 * 9 8 6 37 37 H 0.97000 * 119.99284 * 0.02562 * 10 9 8 38 38 H 1.08003 * 120.00232 * 0.03389 * 14 13 11 39 39 H 1.07999 * 119.99820 * 180.23304 * 15 14 13 40 40 H 1.07993 * 122.65081 * 359.93618 * 18 17 16 41 41 H 1.08003 * 122.45364 * 179.97438 * 19 18 17 42 42 H 1.08994 * 109.47097 * 59.99875 * 21 20 19 43 43 H 0.96704 * 114.00021 * 179.97438 * 22 21 20 44 44 H 1.48498 * 110.00191 * 59.99878 * 23 21 20 45 45 H 1.48496 * 110.00188 * 181.32021 * 23 21 20 46 46 H 1.08000 * 119.99754 * 179.97438 * 25 16 15 47 47 H 1.07994 * 120.00431 * 179.97438 * 26 25 16 48 48 H 1.09005 * 113.61471 * 139.98321 * 27 6 5 49 49 H 1.08996 * 113.61178 * 270.79663 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3143 2.0797 0.3227 5 6 3.3756 1.3718 0.7046 6 6 3.8247 2.3191 -0.4205 7 1 3.6238 3.3701 -0.2126 8 6 5.2570 2.0694 -0.8967 9 6 5.6470 3.1363 -1.9217 10 7 7.0188 2.8976 -2.3772 11 6 7.5791 3.7185 -3.2874 12 8 6.9462 4.6576 -3.7302 13 6 8.9606 3.4777 -3.7466 14 6 9.6905 2.4013 -3.2330 15 6 10.9675 2.1759 -3.6613 16 6 11.5486 3.0273 -4.6059 17 6 12.9303 2.7869 -5.0647 18 6 13.7269 1.7811 -4.6455 19 6 14.9798 1.7617 -5.2190 20 6 15.2152 2.7397 -6.1003 21 6 16.5038 2.9330 -6.8573 22 8 17.5748 3.1304 -5.9321 23 14 16.3561 4.4240 -7.9644 24 16 13.7924 3.7628 -6.2471 25 6 10.8206 4.1069 -5.1156 26 6 9.5419 4.3294 -4.6912 27 6 2.7569 1.6507 -1.3025 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9088 0.4212 0.7139 32 1 3.3381 1.8458 1.6855 33 1 5.9364 2.1176 -0.0457 34 1 5.3202 1.0833 -1.3568 35 1 4.9676 3.0881 -2.7726 36 1 5.5838 4.1224 -1.4616 37 1 7.5237 2.1486 -2.0237 38 1 9.2430 1.7458 -2.5006 39 1 11.5300 1.3423 -3.2673 40 1 13.4079 1.0497 -3.9178 41 1 15.7178 1.0123 -4.9739 42 1 16.7053 2.0496 -7.4631 43 1 18.4368 3.2613 -6.3503 44 1 16.0811 5.6355 -7.1508 45 1 17.6091 4.6069 -8.7401 46 1 11.2697 4.7647 -5.8449 47 1 8.9797 5.1634 -5.0845 48 1 2.2186 2.3501 -1.9422 49 1 3.1214 0.7772 -1.8430 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:47 Heat of formation + Delta-G solvation = -25.954610 kcal Electronic energy + Delta-G solvation = -29081.615813 eV Core-core repulsion = 24874.788160 eV Total energy + Delta-G solvation = -4206.827653 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.138 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.39592 -40.52847 -39.86295 -38.95271 -37.59361 -37.49003 -36.04346 -33.71695 -32.45650 -31.61233 -30.42354 -27.82479 -27.25887 -26.67178 -25.57771 -24.39245 -23.87266 -23.25091 -22.56860 -21.65698 -20.48012 -20.08926 -19.13008 -18.69445 -18.30756 -17.61674 -17.21043 -16.95973 -16.74278 -16.52441 -16.24914 -16.05201 -15.89947 -15.63363 -15.56592 -15.40303 -14.97194 -14.88319 -14.50292 -14.38158 -14.17604 -14.08471 -13.64811 -13.48899 -13.36396 -13.33179 -13.28277 -13.07829 -12.96601 -12.74634 -12.39753 -12.39125 -12.26802 -12.16062 -11.73575 -11.60068 -11.56065 -11.24501 -11.05203 -10.83522 -10.50776 -10.39940 -10.18939 -10.17190 -9.54870 -9.01408 -5.09976 -0.88392 0.24360 0.34532 0.38337 0.76048 1.17532 1.51512 1.57445 1.84207 1.96723 2.06782 2.83593 2.90128 3.31084 3.42929 3.49182 3.63723 3.69610 3.71848 3.77388 3.82487 3.85427 3.90482 4.08940 4.20531 4.26577 4.29835 4.33940 4.37561 4.46902 4.47431 4.53051 4.56176 4.61633 4.64906 4.67421 4.82988 4.84951 4.87474 4.92817 4.98254 5.01326 5.03473 5.10732 5.13354 5.23065 5.27405 5.29376 5.33122 5.36615 5.46533 5.49043 5.73851 6.31062 6.44648 6.52092 7.11534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.048 3.952 4 H 0.095 0.905 5 C -0.128 4.128 6 C -0.100 4.100 7 H 0.101 0.899 8 C -0.108 4.108 9 C 0.120 3.880 10 N -0.712 5.712 11 C 0.554 3.446 12 O -0.583 6.583 13 C -0.151 4.151 14 C -0.067 4.067 15 C -0.108 4.108 16 C 0.007 3.993 17 C -0.161 4.161 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.184 4.184 21 C -0.037 4.037 22 O -0.552 6.552 23 Si 0.702 3.298 24 S 0.120 5.880 25 C -0.129 4.129 26 C -0.064 4.064 27 C -0.154 4.154 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.155 0.845 42 H 0.112 0.888 43 H 0.399 0.601 44 H -0.284 1.284 45 H -0.252 1.252 46 H 0.133 0.867 47 H 0.129 0.871 48 H 0.069 0.931 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -5.282 0.915 5.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C -0.009 4.009 4 H 0.113 0.887 5 C -0.166 4.166 6 C -0.119 4.119 7 H 0.119 0.881 8 C -0.146 4.146 9 C -0.003 4.003 10 N -0.364 5.364 11 C 0.343 3.657 12 O -0.465 6.465 13 C -0.155 4.155 14 C -0.086 4.086 15 C -0.128 4.128 16 C 0.005 3.995 17 C -0.278 4.278 18 C -0.145 4.145 19 C -0.143 4.143 20 C -0.301 4.301 21 C -0.149 4.149 22 O -0.363 6.363 23 Si 0.605 3.395 24 S 0.388 5.612 25 C -0.148 4.148 26 C -0.083 4.083 27 C -0.192 4.192 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.254 0.746 38 H 0.181 0.819 39 H 0.179 0.821 40 H 0.187 0.813 41 H 0.173 0.827 42 H 0.130 0.870 43 H 0.250 0.750 44 H -0.211 1.211 45 H -0.176 1.176 46 H 0.151 0.849 47 H 0.147 0.853 48 H 0.088 0.912 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.306 -2.781 -0.053 2.798 hybrid contribution 1.320 -1.032 1.138 2.026 sum 1.626 -3.813 1.086 4.285 Atomic orbital electron populations 1.22924 0.80135 1.03545 1.00601 1.87903 1.20974 1.28587 1.94759 1.23975 0.94517 0.84944 0.97499 0.88671 1.23255 0.94712 1.00233 0.98369 1.22191 0.93642 0.99691 0.96349 0.88058 1.21668 0.96227 0.98335 0.98331 1.21404 0.81618 0.99581 0.97719 1.45828 1.16175 1.31543 1.42874 1.18500 0.86594 0.81738 0.78875 1.90781 1.64945 1.32241 1.58513 1.20030 0.94023 0.99650 1.01776 1.21270 0.93916 0.95216 0.98174 1.21200 0.95350 0.99838 0.96388 1.18462 0.90081 0.95105 0.95880 1.23163 0.97946 1.02156 1.04510 1.20638 0.92952 0.98911 1.02027 1.20200 0.97615 0.99713 0.96766 1.24078 0.98832 1.00831 1.06353 1.24110 0.84599 1.10409 0.95736 1.86555 1.19646 1.94396 1.35702 0.94581 0.88404 0.75857 0.80685 1.84173 1.05464 1.30612 1.40993 1.21027 0.94457 0.98062 1.01238 1.20941 0.94590 0.98149 0.94615 1.23655 0.97791 1.00746 0.96982 0.93536 0.89061 0.93170 0.89302 0.90121 0.89381 0.90172 0.92453 0.92101 0.74587 0.81883 0.82075 0.81329 0.82700 0.87003 0.74978 1.21100 1.17619 0.84899 0.85325 0.91230 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 2 O -0.40 -1.71 10.72 -148.98 -1.60 -3.31 16 3 C 0.05 -0.01 4.32 31.21 0.13 0.13 16 4 H 0.10 -0.22 7.87 -2.39 -0.02 -0.24 16 5 C -0.13 0.35 7.46 31.12 0.23 0.58 16 6 C -0.10 0.41 3.65 -10.27 -0.04 0.37 16 7 H 0.10 -0.48 8.13 -2.39 -0.02 -0.50 16 8 C -0.11 0.62 5.16 30.59 0.16 0.78 16 9 C 0.12 -0.09 5.67 86.38 0.49 0.40 16 10 N -0.71 0.61 5.50 -466.24 -2.57 -1.96 16 11 C 0.55 3.62 7.76 86.70 0.67 4.30 16 12 O -0.58 -9.08 16.33 -4.02 -0.07 -9.14 16 13 C -0.15 -0.50 5.88 -20.05 -0.12 -0.62 16 14 C -0.07 0.22 9.48 22.26 0.21 0.43 16 15 C -0.11 0.31 9.48 22.26 0.21 0.52 16 16 C 0.01 0.01 5.88 -20.05 -0.12 -0.11 16 17 C -0.16 -0.29 6.37 23.98 0.15 -0.14 16 18 C -0.11 0.07 9.64 21.42 0.21 0.28 16 19 C -0.11 -0.08 10.00 21.14 0.21 0.13 16 20 C -0.18 -0.35 5.76 24.66 0.14 -0.21 16 21 C -0.04 0.04 2.95 71.24 0.21 0.25 16 22 O -0.55 -0.50 12.83 -148.98 -1.91 -2.41 16 23 Si 0.70 -0.63 30.96 68.60 2.12 1.49 16 24 S 0.12 0.29 19.46 -56.49 -1.10 -0.81 16 25 C -0.13 -0.42 9.54 22.26 0.21 -0.21 16 26 C -0.06 -0.34 9.53 22.26 0.21 -0.12 16 27 C -0.15 0.20 7.48 31.21 0.23 0.43 16 28 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.05 -0.13 8.14 -2.39 -0.02 -0.14 16 31 H 0.09 -0.16 8.10 -2.39 -0.02 -0.18 16 32 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 34 H 0.08 -0.51 7.84 -2.39 -0.02 -0.53 16 35 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.06 0.09 8.14 -2.38 -0.02 0.07 16 37 H 0.42 -3.22 6.48 -92.71 -0.60 -3.82 16 38 H 0.16 -1.75 6.38 -2.91 -0.02 -1.77 16 39 H 0.16 -1.39 6.74 -2.91 -0.02 -1.41 16 40 H 0.17 -1.05 6.88 -2.91 -0.02 -1.07 16 41 H 0.16 -0.29 8.06 -2.91 -0.02 -0.32 16 42 H 0.11 -0.69 7.96 -2.39 -0.02 -0.71 16 43 H 0.40 -2.98 8.74 -74.05 -0.65 -3.63 16 44 H -0.28 -2.00 7.11 99.48 0.71 -1.30 16 45 H -0.25 -0.30 7.11 99.48 0.71 0.40 16 46 H 0.13 0.22 7.26 -2.91 -0.02 0.20 16 47 H 0.13 0.88 7.64 -2.91 -0.02 0.86 16 48 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 49 H 0.08 0.01 7.89 -2.39 -0.02 -0.01 16 Total: 0.00 -22.50 418.00 -0.70 -23.20 By element: Atomic # 1 Polarization: -15.24 SS G_CDS: -0.23 Total: -15.47 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 4.65 Total: 8.40 kcal Atomic # 7 Polarization: 0.61 SS G_CDS: -2.57 Total: -1.96 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -3.57 Total: -14.86 kcal Atomic # 14 Polarization: -0.63 SS G_CDS: 2.12 Total: 1.49 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -1.10 Total: -0.81 kcal Total: -22.50 -0.70 -23.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.753 kcal (2) G-P(sol) polarization free energy of solvation -22.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds