Wall clock time and date at job start Sun Mar 7 2021 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99741 * 2 1 4 4 H 1.08996 * 112.84579 * 341.19190 * 3 2 1 5 5 C 1.53775 * 113.61522 * 112.50357 * 3 2 1 6 6 C 1.53779 * 87.08045 * 139.98140 * 5 3 2 7 7 H 1.08999 * 113.61746 * 89.11955 * 6 5 3 8 8 C 1.53005 * 113.68852 * 220.00510 * 6 5 3 9 9 C 1.53001 * 109.47247 * 272.53533 * 8 6 5 10 10 N 1.46495 * 109.47168 * 180.02562 * 9 8 6 11 11 C 1.34779 * 120.00255 * 180.02562 * 10 9 8 12 12 O 1.21583 * 119.99597 * 359.97438 * 11 10 9 13 13 C 1.47529 * 120.00055 * 179.97438 * 11 10 9 14 14 C 1.40146 * 120.19345 * 179.71840 * 13 11 10 15 15 O 1.35654 * 120.14341 * 359.97438 * 14 13 11 16 16 C 1.38705 * 119.69982 * 179.79186 * 14 13 11 17 17 C 1.38047 * 120.08787 * 0.48270 * 16 14 13 18 18 C 1.50697 * 119.80668 * 179.76653 * 17 16 14 19 19 O 1.42900 * 109.47220 * 64.98132 * 18 17 16 20 20 Si 1.86307 * 109.47294 * 184.97979 * 18 17 16 21 21 C 1.38552 * 120.38946 * 359.74962 * 17 16 14 22 22 C 1.37784 * 120.30078 * 0.02562 * 21 17 16 23 23 C 1.53779 * 87.08153 * 334.56518 * 6 5 3 24 24 H 1.08993 * 109.47162 * 60.00665 * 1 2 3 25 25 H 1.09001 * 109.46593 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47124 * 300.00185 * 1 2 3 27 27 H 1.09007 * 113.61519 * 254.52747 * 5 3 2 28 28 H 1.08996 * 113.61809 * 25.43106 * 5 3 2 29 29 H 1.09001 * 109.46772 * 32.53494 * 8 6 5 30 30 H 1.09001 * 109.46740 * 152.53717 * 8 6 5 31 31 H 1.08993 * 109.46945 * 299.99884 * 9 8 6 32 32 H 1.08997 * 109.46862 * 59.99963 * 9 8 6 33 33 H 0.97005 * 120.00093 * 359.97438 * 10 9 8 34 34 H 0.96704 * 113.99463 * 90.00291 * 15 14 13 35 35 H 1.08007 * 119.95371 * 180.25673 * 16 14 13 36 36 H 1.08999 * 109.47212 * 304.97781 * 18 17 16 37 37 H 0.96707 * 113.99724 * 60.00291 * 19 18 17 38 38 H 1.48507 * 109.99769 * 58.68036 * 20 18 17 39 39 H 1.48492 * 109.99998 * 179.97438 * 20 18 17 40 40 H 1.08000 * 119.84954 * 180.02562 * 21 17 16 41 41 H 1.08001 * 120.04903 * 180.02562 * 22 21 17 42 42 H 1.09003 * 113.61486 * 270.88670 * 23 6 5 43 43 H 1.08993 * 113.61310 * 139.98126 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0788 -0.3238 5 6 2.7534 1.6490 1.3017 6 6 3.8226 2.3183 0.4221 7 1 3.6221 3.3694 0.2148 8 6 5.2549 2.0696 0.8992 9 6 5.6429 3.1355 1.9259 10 7 7.0145 2.8977 2.3822 11 6 7.5729 3.7176 3.2947 12 8 6.9383 4.6548 3.7388 13 6 8.9539 3.4777 3.7547 14 6 9.5406 4.3311 4.6990 15 8 8.8410 5.3825 5.1944 16 6 10.8382 4.0935 5.1275 17 6 11.5509 3.0268 4.6178 18 6 12.9622 2.7776 5.0839 19 8 12.9528 2.4412 6.4727 20 14 13.6990 1.3712 4.1093 21 6 10.9763 2.1836 3.6805 22 6 9.6868 2.4020 3.2470 23 6 3.3755 1.3720 -0.7046 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.2140 2.3478 1.9411 28 1 3.1167 0.7742 1.8410 29 1 5.3188 1.0829 1.3581 30 1 5.9349 2.1196 0.0488 31 1 5.5790 4.1221 1.4671 32 1 4.9628 3.0855 2.7762 33 1 7.5206 2.1498 2.0282 34 1 8.3319 5.1762 5.9902 35 1 11.2928 4.7462 5.8582 36 1 13.5591 3.6769 4.9319 37 1 12.4391 1.6490 6.6820 38 1 13.6854 1.6955 2.6601 39 1 15.0910 1.1159 4.5590 40 1 11.5417 1.3514 3.2879 41 1 9.2427 1.7420 2.5165 42 1 3.9088 0.4214 -0.7138 43 1 3.3383 1.8471 -1.6848 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_13422076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:51 Heat of formation + Delta-G solvation = -105.063303 kcal Electronic energy + Delta-G solvation = -24591.261816 eV Core-core repulsion = 20797.149114 eV Total energy + Delta-G solvation = -3794.112701 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65042 -40.58308 -39.90051 -38.47407 -37.51606 -37.13813 -35.91169 -33.18039 -31.35633 -31.10981 -27.91813 -27.40221 -26.67394 -25.39046 -23.90281 -23.31249 -22.56371 -21.60841 -20.47414 -19.49281 -18.71005 -18.18400 -17.60832 -17.36352 -16.82423 -16.67728 -16.44801 -16.29976 -16.03336 -15.97802 -15.70425 -15.52014 -15.28411 -14.80449 -14.71237 -14.37099 -13.84552 -13.63604 -13.44788 -13.35721 -13.20132 -13.01451 -12.89856 -12.38815 -12.30606 -12.26885 -12.18778 -11.72806 -11.70761 -11.50454 -11.22797 -10.91835 -10.48550 -10.39837 -10.26898 -10.01334 -9.78034 -4.98219 -0.42018 0.14339 1.28943 1.65356 1.72475 2.00742 2.06288 2.57643 2.90543 3.11399 3.44946 3.49886 3.54914 3.64349 3.70279 3.78853 3.83752 3.90780 4.07362 4.10662 4.26433 4.29422 4.30810 4.37295 4.47725 4.53344 4.59208 4.63915 4.67898 4.76370 4.83473 4.85602 4.87933 4.98841 5.02636 5.02900 5.12208 5.16358 5.24055 5.28568 5.38382 5.46957 5.59758 6.31351 6.47112 6.70004 6.75475 7.15936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.048 3.952 4 H 0.094 0.906 5 C -0.153 4.153 6 C -0.100 4.100 7 H 0.099 0.901 8 C -0.107 4.107 9 C 0.122 3.878 10 N -0.713 5.713 11 C 0.552 3.448 12 O -0.568 6.568 13 C -0.180 4.180 14 C 0.151 3.849 15 O -0.499 6.499 16 C -0.141 4.141 17 C -0.074 4.074 18 C -0.085 4.085 19 O -0.554 6.554 20 Si 0.792 3.208 21 C -0.129 4.129 22 C -0.053 4.053 23 C -0.128 4.128 24 H 0.049 0.951 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.415 0.585 34 H 0.407 0.593 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.398 0.602 38 H -0.278 1.278 39 H -0.303 1.303 40 H 0.167 0.833 41 H 0.171 0.829 42 H 0.090 0.910 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.867 -7.227 -2.522 7.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C -0.009 4.009 4 H 0.112 0.888 5 C -0.190 4.190 6 C -0.119 4.119 7 H 0.117 0.883 8 C -0.145 4.145 9 C -0.001 4.001 10 N -0.367 5.367 11 C 0.340 3.660 12 O -0.448 6.448 13 C -0.184 4.184 14 C 0.104 3.896 15 O -0.312 6.312 16 C -0.160 4.160 17 C -0.075 4.075 18 C -0.194 4.194 19 O -0.363 6.363 20 Si 0.697 3.303 21 C -0.146 4.146 22 C -0.071 4.071 23 C -0.166 4.166 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.254 0.746 34 H 0.267 0.733 35 H 0.150 0.850 36 H 0.124 0.876 37 H 0.248 0.752 38 H -0.205 1.205 39 H -0.232 1.232 40 H 0.184 0.816 41 H 0.188 0.812 42 H 0.108 0.892 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.030 -6.149 -3.186 6.926 hybrid contribution -0.447 0.869 0.609 1.151 sum -0.477 -5.281 -2.577 5.895 Atomic orbital electron populations 1.22919 0.80179 1.03538 1.00565 1.87907 1.20919 1.28555 1.94773 1.23927 0.94514 0.84940 0.97554 0.88811 1.23599 0.97732 1.00759 0.96950 1.22190 0.93736 0.99602 0.96383 0.88270 1.21667 0.96136 0.98415 0.98284 1.21362 0.81683 0.99393 0.97683 1.45817 1.16151 1.31741 1.42961 1.18354 0.86313 0.81934 0.79360 1.90807 1.64437 1.31522 1.57992 1.20466 0.94865 0.99434 1.03631 1.18779 0.91027 0.86131 0.93630 1.84717 1.64976 1.32822 1.48725 1.21338 0.93915 0.98892 1.01827 1.20579 0.96659 0.94409 0.95807 1.25430 0.95333 1.09459 0.89196 1.86506 1.75972 1.51604 1.22181 0.93687 0.79004 0.82358 0.75269 1.21244 0.95586 1.00199 0.97578 1.21524 0.93661 0.94406 0.97514 1.23258 0.94730 1.00269 0.98315 0.93235 0.89047 0.93555 0.91289 0.89568 0.89936 0.89473 0.92548 0.92418 0.74644 0.73309 0.84958 0.87621 0.75219 1.20497 1.23188 0.81648 0.81204 0.89171 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 2 O -0.40 -1.47 10.71 -148.98 -1.60 -3.07 16 3 C 0.05 -0.03 4.31 31.12 0.13 0.10 16 4 H 0.09 -0.24 7.87 -2.39 -0.02 -0.26 16 5 C -0.15 0.30 7.47 31.12 0.23 0.53 16 6 C -0.10 0.46 3.65 -10.27 -0.04 0.42 16 7 H 0.10 -0.48 8.13 -2.39 -0.02 -0.50 16 8 C -0.11 0.69 5.17 30.60 0.16 0.85 16 9 C 0.12 -0.16 5.66 86.38 0.49 0.33 16 10 N -0.71 1.21 5.51 -466.30 -2.57 -1.35 16 11 C 0.55 3.31 7.76 86.69 0.67 3.98 16 12 O -0.57 -8.55 15.16 16.94 0.26 -8.29 16 13 C -0.18 -0.45 5.89 -20.01 -0.12 -0.57 16 14 C 0.15 0.83 6.72 22.84 0.15 0.98 16 15 O -0.50 -4.34 11.58 -68.77 -0.80 -5.14 16 16 C -0.14 -0.35 9.60 22.34 0.21 -0.14 16 17 C -0.07 0.15 5.35 -19.84 -0.11 0.05 16 18 C -0.09 0.24 2.79 71.23 0.20 0.44 16 19 O -0.55 0.96 12.83 -148.98 -1.91 -0.95 16 20 Si 0.79 -4.58 29.78 68.60 2.04 -2.53 16 21 C -0.13 0.81 8.64 22.24 0.19 1.00 16 22 C -0.05 0.29 9.54 22.52 0.21 0.50 16 23 C -0.13 0.41 7.47 31.12 0.23 0.64 16 24 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.07 -0.12 8.14 -2.38 -0.02 -0.14 16 28 H 0.09 -0.07 7.90 -2.39 -0.02 -0.09 16 29 H 0.08 -0.62 7.85 -2.39 -0.02 -0.64 16 30 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.42 -3.72 6.50 -92.70 -0.60 -4.32 16 34 H 0.41 0.65 9.06 -74.05 -0.67 -0.02 16 35 H 0.13 0.41 8.06 -2.91 -0.02 0.38 16 36 H 0.11 -0.08 7.96 -2.39 -0.02 -0.10 16 37 H 0.40 -4.17 8.70 -74.05 -0.64 -4.81 16 38 H -0.28 0.50 7.11 99.48 0.71 1.21 16 39 H -0.30 -0.86 7.11 99.48 0.71 -0.15 16 40 H 0.17 -2.07 4.88 -2.91 -0.01 -2.08 16 41 H 0.17 -2.26 6.40 -2.91 -0.02 -2.28 16 42 H 0.09 -0.23 8.10 -2.39 -0.02 -0.24 16 43 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: 0.00 -25.02 357.20 -1.54 -26.56 By element: Atomic # 1 Polarization: -14.71 SS G_CDS: -0.83 Total: -15.54 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: 3.86 Total: 10.32 kcal Atomic # 7 Polarization: 1.21 SS G_CDS: -2.57 Total: -1.35 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -4.05 Total: -17.45 kcal Atomic # 14 Polarization: -4.58 SS G_CDS: 2.04 Total: -2.53 kcal Total: -25.02 -1.54 -26.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_13422076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.500 kcal (2) G-P(sol) polarization free energy of solvation -25.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds