Wall clock time and date at job start Sun Mar 7 2021 05:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42887 * 1 3 3 C 1.42902 * 113.99899 * 2 1 4 4 H 1.08995 * 112.84975 * 18.80598 * 3 2 1 5 5 C 1.53787 * 113.61602 * 149.99904 * 3 2 1 6 6 C 1.53783 * 87.08033 * 139.98010 * 5 3 2 7 7 H 1.08998 * 113.60890 * 89.20615 * 6 5 3 8 8 C 1.53000 * 113.61092 * 220.01630 * 6 5 3 9 9 C 1.53008 * 109.46587 * 185.00211 * 8 6 5 10 10 N 1.46501 * 109.46912 * 180.02562 * 9 8 6 11 11 C 1.34773 * 119.99897 * 180.02562 * 10 9 8 12 12 O 1.21653 * 120.00360 * 359.97438 * 11 10 9 13 13 C 1.47046 * 119.99942 * 179.97438 * 11 10 9 14 14 C 1.36222 * 123.49447 * 179.97438 * 13 11 10 15 15 Cl 1.73599 * 124.60550 * 0.03322 * 14 13 11 16 16 S 1.70446 * 110.79233 * 180.02562 * 14 13 11 17 17 C 1.75490 * 92.46461 * 359.97438 * 16 14 13 18 18 C 1.50706 * 124.68715 * 180.02562 * 17 16 14 19 19 O 1.42895 * 109.46938 * 120.02431 * 18 17 16 20 20 Si 1.86299 * 109.46748 * 0.02596 * 18 17 16 21 21 C 1.32695 * 110.63069 * 0.27047 * 17 16 14 22 22 C 1.53782 * 87.08372 * 334.56923 * 6 5 3 23 23 H 1.09004 * 109.47397 * 60.00254 * 1 2 3 24 24 H 1.09000 * 109.47344 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47599 * 299.99942 * 1 2 3 26 26 H 1.09007 * 113.61343 * 25.43473 * 5 3 2 27 27 H 1.08997 * 113.69019 * 254.54436 * 5 3 2 28 28 H 1.09004 * 109.47092 * 65.01123 * 8 6 5 29 29 H 1.08996 * 109.47718 * 305.00238 * 8 6 5 30 30 H 1.08997 * 109.47295 * 60.00568 * 9 8 6 31 31 H 1.08996 * 109.47113 * 300.00397 * 9 8 6 32 32 H 0.97003 * 120.00037 * 359.97438 * 10 9 8 33 33 H 1.09000 * 109.47161 * 240.02697 * 18 17 16 34 34 H 0.96709 * 113.99981 * 180.02562 * 19 18 17 35 35 H 1.48498 * 110.00336 * 298.68292 * 20 18 17 36 36 H 1.48504 * 109.99873 * 60.00145 * 20 18 17 37 37 H 1.08004 * 123.45173 * 179.69923 * 21 17 16 38 38 H 1.08997 * 113.61416 * 139.97730 * 22 6 5 39 39 H 1.08998 * 113.60855 * 270.88641 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0788 0.3238 5 6 3.3754 1.3720 0.7046 6 6 3.8226 2.3182 -0.4222 7 1 3.6234 3.3695 -0.2142 8 6 5.2542 2.0681 -0.9006 9 6 5.6424 3.1341 -1.9272 10 7 7.0130 2.8943 -2.3857 11 6 7.5716 3.7143 -3.2978 12 8 6.9376 4.6534 -3.7406 13 6 8.9475 3.4740 -3.7576 14 6 9.5808 4.2562 -4.6756 15 17 8.8758 5.6458 -5.4409 16 16 11.1594 3.6854 -4.9707 17 6 10.9744 2.3607 -3.8346 18 6 12.0386 1.3385 -3.5283 19 8 12.3642 1.3920 -2.1380 20 14 13.5610 1.7057 -4.5373 21 6 9.7661 2.3803 -3.2864 22 6 2.7533 1.6489 -1.3018 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.9088 0.4214 0.7138 27 1 3.3396 1.8468 1.6850 28 1 5.3166 1.0815 -1.3599 29 1 5.9351 2.1170 -0.0508 30 1 5.5800 4.1206 -1.4680 31 1 4.9615 3.0852 -2.7769 32 1 7.5186 2.1457 -2.0324 33 1 11.6691 0.3437 -3.7769 34 1 13.0447 0.7598 -1.8687 35 1 13.2430 1.6221 -5.9854 36 1 14.0746 3.0595 -4.2075 37 1 9.4298 1.6545 -2.5607 38 1 2.2139 2.3477 -1.9411 39 1 3.1166 0.7741 -1.8409 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_13431040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:15:07 Heat of formation + Delta-G solvation = -57.921137 kcal Electronic energy + Delta-G solvation = -23097.064949 eV Core-core repulsion = 19353.031131 eV Total energy + Delta-G solvation = -3744.033818 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.068 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18341 -40.48631 -38.86824 -38.08410 -37.55500 -37.04357 -35.99588 -32.14923 -31.53817 -27.84910 -27.04469 -26.73246 -26.38698 -24.43864 -22.59775 -22.07730 -20.87639 -20.40524 -19.32012 -18.40181 -18.07010 -17.64737 -17.03524 -16.80156 -16.60088 -16.28151 -16.08060 -15.67550 -15.63119 -15.26686 -15.02578 -14.57148 -14.52258 -14.29065 -14.25123 -13.64279 -13.42744 -13.37154 -13.01738 -12.99938 -12.62069 -12.48240 -12.40455 -12.29025 -12.25355 -12.04029 -11.74132 -11.52813 -11.24735 -11.00081 -10.45984 -10.41023 -10.26283 -9.94204 -9.78989 -5.23765 -0.74815 -0.28237 0.34638 0.63800 0.90998 1.18419 1.58248 1.89558 2.08701 2.09954 2.89471 3.18185 3.48778 3.60783 3.63614 3.77586 3.82005 3.88926 3.90093 4.08153 4.23428 4.28656 4.33934 4.44958 4.46951 4.52326 4.61846 4.65510 4.69961 4.82271 4.84190 4.86562 4.88557 4.97434 5.02368 5.12034 5.26716 5.33806 5.45591 6.30424 6.38818 6.88772 7.06473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.049 3.951 4 H 0.095 0.905 5 C -0.128 4.128 6 C -0.099 4.099 7 H 0.101 0.899 8 C -0.107 4.107 9 C 0.123 3.877 10 N -0.708 5.708 11 C 0.569 3.431 12 O -0.561 6.561 13 C -0.163 4.163 14 C -0.134 4.134 15 Cl 0.005 6.995 16 S 0.199 5.801 17 C -0.190 4.190 18 C -0.033 4.033 19 O -0.557 6.557 20 Si 0.747 3.253 21 C -0.063 4.063 22 C -0.154 4.154 23 H 0.045 0.955 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.415 0.585 33 H 0.123 0.877 34 H 0.409 0.591 35 H -0.266 1.266 36 H -0.279 1.279 37 H 0.190 0.810 38 H 0.068 0.932 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 -7.751 3.639 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C -0.008 4.008 4 H 0.113 0.887 5 C -0.165 4.165 6 C -0.118 4.118 7 H 0.119 0.881 8 C -0.145 4.145 9 C 0.000 4.000 10 N -0.360 5.360 11 C 0.355 3.645 12 O -0.440 6.440 13 C -0.183 4.183 14 C -0.280 4.280 15 Cl 0.034 6.966 16 S 0.463 5.537 17 C -0.307 4.307 18 C -0.146 4.146 19 O -0.368 6.368 20 Si 0.651 3.349 21 C -0.091 4.091 22 C -0.191 4.191 23 H 0.064 0.936 24 H 0.110 0.890 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.253 0.747 33 H 0.140 0.860 34 H 0.262 0.738 35 H -0.191 1.191 36 H -0.205 1.205 37 H 0.207 0.793 38 H 0.087 0.913 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.574 -5.668 1.730 7.486 hybrid contribution -1.914 0.099 0.736 2.053 sum 2.661 -5.568 2.466 6.646 Atomic orbital electron populations 1.22921 0.80169 1.03541 1.00575 1.87905 1.20936 1.28559 1.94763 1.23923 0.94513 0.84959 0.97453 0.88708 1.23256 0.94710 1.00236 0.98342 1.22190 0.93576 0.99694 0.96379 0.88100 1.21668 0.96266 0.98318 0.98262 1.21405 0.81327 0.99615 0.97700 1.45733 1.16328 1.31430 1.42543 1.17613 0.85138 0.82289 0.79483 1.90854 1.63953 1.31370 1.57865 1.20436 0.96740 0.99141 1.01955 1.25778 1.01758 0.97559 1.02877 1.98416 1.82871 1.36766 1.78523 1.83507 1.07023 1.21721 1.41451 1.23784 1.00016 1.02154 1.04732 1.24020 1.01765 0.98669 0.90153 1.86453 1.63768 1.65220 1.21335 0.93866 0.80780 0.83155 0.77113 1.21216 0.91208 0.96841 0.99869 1.23604 0.97790 1.00731 0.97003 0.93593 0.89048 0.93173 0.89268 0.90104 0.90151 0.89459 0.92088 0.92357 0.74714 0.85965 0.73796 1.19130 1.20532 0.79300 0.91281 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.40 -1.77 10.71 -148.98 -1.60 -3.37 16 3 C 0.05 0.01 4.31 31.12 0.13 0.14 16 4 H 0.10 -0.19 7.87 -2.39 -0.02 -0.21 16 5 C -0.13 0.30 7.47 31.12 0.23 0.53 16 6 C -0.10 0.36 3.65 -10.27 -0.04 0.32 16 7 H 0.10 -0.42 8.13 -2.39 -0.02 -0.44 16 8 C -0.11 0.54 5.17 30.60 0.16 0.70 16 9 C 0.12 0.02 5.67 86.38 0.49 0.50 16 10 N -0.71 -0.53 5.53 -466.73 -2.58 -3.11 16 11 C 0.57 4.89 7.79 86.55 0.67 5.56 16 12 O -0.56 -9.22 14.91 -4.20 -0.06 -9.28 16 13 C -0.16 -1.05 5.98 -19.84 -0.12 -1.17 16 14 C -0.13 -1.18 6.87 67.35 0.46 -0.72 16 15 Cl 0.01 0.06 27.20 -2.72 -0.07 -0.01 16 16 S 0.20 0.93 20.17 -56.49 -1.14 -0.21 16 17 C -0.19 -0.06 5.71 24.52 0.14 0.08 16 18 C -0.03 0.21 2.94 71.24 0.21 0.42 16 19 O -0.56 3.76 12.83 -148.98 -1.91 1.85 16 20 Si 0.75 -4.37 30.90 68.60 2.12 -2.25 16 21 C -0.06 0.01 9.71 22.70 0.22 0.23 16 22 C -0.15 0.13 7.46 31.12 0.23 0.37 16 23 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 24 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 25 H 0.05 -0.11 8.14 -2.38 -0.02 -0.13 16 26 H 0.09 -0.13 8.10 -2.38 -0.02 -0.15 16 27 H 0.08 -0.30 8.14 -2.39 -0.02 -0.31 16 28 H 0.08 -0.46 7.84 -2.39 -0.02 -0.48 16 29 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.42 -2.38 7.02 -92.71 -0.65 -3.03 16 33 H 0.12 -1.50 7.96 -2.39 -0.02 -1.52 16 34 H 0.41 -7.01 8.74 -74.05 -0.65 -7.66 16 35 H -0.27 0.20 7.11 99.48 0.71 0.91 16 36 H -0.28 -0.56 7.11 99.48 0.71 0.15 16 37 H 0.19 -1.34 7.10 -2.91 -0.02 -1.36 16 38 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 39 H 0.08 0.05 7.90 -2.39 -0.02 0.03 16 Total: 0.00 -21.71 355.84 -1.39 -23.11 By element: Atomic # 1 Polarization: -14.73 SS G_CDS: -0.17 Total: -14.90 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 4.03 Total: 8.18 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -2.58 Total: -3.11 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -3.57 Total: -10.80 kcal Atomic # 14 Polarization: -4.37 SS G_CDS: 2.12 Total: -2.25 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -1.14 Total: -0.21 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.07 Total: -0.01 kcal Total: -21.71 -1.39 -23.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_13431040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.815 kcal (2) G-P(sol) polarization free energy of solvation -21.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds