Wall clock time and date at job start Sun Mar 7 2021 05:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99783 * 2 1 4 4 H 1.08998 * 112.90736 * 341.24728 * 3 2 1 5 5 C 1.53772 * 113.61604 * 112.50553 * 3 2 1 6 6 C 1.53775 * 87.08541 * 139.97958 * 5 3 2 7 7 H 1.08995 * 113.69455 * 89.12594 * 6 5 3 8 8 C 1.53000 * 113.61813 * 220.02006 * 6 5 3 9 9 C 1.52997 * 109.47273 * 272.49710 * 8 6 5 10 10 N 1.46499 * 109.47555 * 179.97438 * 9 8 6 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 N 1.46902 * 109.47027 * 179.72353 * 13 11 10 15 15 C 1.46897 * 110.99609 * 293.95228 * 14 13 11 16 16 C 1.39669 * 110.99756 * 169.99735 * 14 13 11 17 17 C 1.38888 * 120.07483 * 239.99494 * 16 14 13 18 18 C 1.50694 * 120.03739 * 0.02562 * 17 16 14 19 19 O 1.42899 * 109.47377 * 74.99956 * 18 17 16 20 20 Si 1.86302 * 109.47086 * 194.99667 * 18 17 16 21 21 C 1.38124 * 119.92633 * 179.97438 * 17 16 14 22 22 C 1.38270 * 120.07438 * 0.02717 * 21 17 16 23 23 C 1.50700 * 119.92300 * 179.97438 * 22 21 17 24 24 F 1.39900 * 109.46983 * 90.00069 * 23 22 21 25 25 F 1.39903 * 109.46841 * 209.99673 * 23 22 21 26 26 F 1.39894 * 109.47504 * 329.99533 * 23 22 21 27 27 C 1.38303 * 120.14714 * 359.97282 * 22 21 17 28 28 C 1.38088 * 120.07783 * 359.75117 * 27 22 21 29 29 C 1.53778 * 113.61162 * 210.00178 * 3 2 1 30 30 H 1.08994 * 109.47162 * 60.00214 * 1 2 3 31 31 H 1.09003 * 109.46638 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46781 * 299.99883 * 1 2 3 33 33 H 1.09009 * 113.61653 * 25.42946 * 5 3 2 34 34 H 1.09001 * 113.61572 * 254.52639 * 5 3 2 35 35 H 1.08998 * 109.47307 * 152.49186 * 8 6 5 36 36 H 1.09005 * 109.46653 * 32.49120 * 8 6 5 37 37 H 1.08998 * 109.47382 * 59.99521 * 9 8 6 38 38 H 1.09002 * 109.47216 * 299.99958 * 9 8 6 39 39 H 0.97000 * 119.99484 * 359.97438 * 10 9 8 40 40 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 41 41 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 42 42 H 1.09000 * 109.47177 * 60.00124 * 15 14 13 43 43 H 1.09001 * 109.46926 * 180.02562 * 15 14 13 44 44 H 1.09005 * 109.47416 * 299.99757 * 15 14 13 45 45 H 1.08997 * 109.47483 * 314.99564 * 18 17 16 46 46 H 0.96703 * 113.99940 * 300.00197 * 19 18 17 47 47 H 1.48494 * 110.00032 * 60.00348 * 20 18 17 48 48 H 1.48505 * 110.00061 * 181.31919 * 20 18 17 49 49 H 1.08000 * 119.96752 * 180.02562 * 21 17 16 50 50 H 1.08001 * 119.96204 * 180.02562 * 27 22 21 51 51 H 1.07997 * 120.03682 * 180.27799 * 28 27 22 52 52 H 1.09000 * 113.61846 * 105.47166 * 29 3 2 53 53 H 1.09003 * 113.69343 * 334.57438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3142 2.0797 -0.3228 5 6 2.7534 1.6489 1.3016 6 6 3.8227 2.3182 0.4222 7 1 3.6235 3.3694 0.2142 8 6 5.2543 2.0681 0.9005 9 6 5.6425 3.1340 1.9271 10 7 7.0131 2.8942 2.3857 11 6 7.5714 3.7137 3.2985 12 8 6.9393 4.6499 3.7399 13 6 8.9835 3.4706 3.7655 14 7 9.3579 4.4969 4.7477 15 6 9.4200 5.8251 4.1234 16 6 10.5680 4.1781 5.3680 17 6 10.6192 4.0021 6.7447 18 6 9.3687 4.1541 7.5717 19 8 8.5362 3.0066 7.3920 20 14 9.8288 4.3119 9.3701 21 6 11.8175 3.6864 7.3549 22 6 12.9653 3.5462 6.5969 23 6 14.2710 3.2023 7.2662 24 9 14.4160 1.8118 7.3187 25 9 15.3289 3.7543 6.5359 26 9 14.2801 3.7216 8.5652 27 6 12.9178 3.7208 5.2257 28 6 11.7220 4.0309 4.6086 29 6 3.3755 1.3719 -0.7046 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1167 0.7740 1.8410 34 1 2.2141 2.3477 1.9411 35 1 5.9351 2.1170 0.0507 36 1 5.3167 1.0815 1.3599 37 1 4.9617 3.0851 2.7769 38 1 5.5801 4.1206 1.4679 39 1 7.5184 2.1452 2.0328 40 1 9.0490 2.4851 4.2268 41 1 9.6613 3.5187 2.9134 42 1 8.4441 6.0777 3.7087 43 1 9.6997 6.5659 4.8725 44 1 10.1628 5.8173 3.3257 45 1 8.8299 5.0471 7.2549 46 1 8.2576 2.8622 6.4773 47 1 10.6945 5.5016 9.5704 48 1 8.6027 4.4305 10.1996 49 1 11.8580 3.5490 8.4254 50 1 13.8161 3.6102 4.6364 51 1 11.6848 4.1627 3.5373 52 1 3.3384 1.8471 -1.6848 53 1 3.9098 0.4219 -0.7147 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_6406254.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:16:46 Heat of formation + Delta-G solvation = -191.924415 kcal Electronic energy + Delta-G solvation = -38380.548351 eV Core-core repulsion = 32805.412948 eV Total energy + Delta-G solvation = -5575.135404 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.180 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -51.18702 -48.71182 -48.64735 -41.79318 -40.75715 -40.34458 -37.89753 -37.62115 -37.40890 -35.86967 -33.03361 -32.32801 -31.79983 -29.33602 -27.76461 -27.55635 -26.99382 -26.69972 -25.57454 -24.73289 -23.34449 -22.56600 -22.07691 -21.42206 -20.46552 -19.54483 -19.49489 -19.44348 -18.49104 -18.17051 -17.74125 -17.54860 -17.11357 -16.87263 -16.71353 -16.54681 -16.24432 -16.07349 -15.84464 -15.66669 -15.54605 -15.52354 -15.31319 -15.18032 -15.08399 -14.96223 -14.82254 -14.80371 -14.67215 -14.48376 -14.23671 -14.00523 -13.65487 -13.60763 -13.43670 -13.37658 -13.19924 -13.08793 -12.92957 -12.83911 -12.60423 -12.35346 -12.25928 -12.22404 -11.74269 -11.52236 -11.45278 -11.24202 -11.21952 -10.87576 -10.41591 -10.23128 -10.12022 -10.07899 -9.67775 -4.98120 -0.37015 0.01266 1.29632 1.54953 1.59972 1.60904 1.90814 1.93625 2.17742 2.62532 2.72905 2.89833 2.94652 3.37027 3.49056 3.49251 3.62471 3.64547 3.70015 3.82218 3.83689 3.89408 4.01211 4.02974 4.07230 4.09469 4.17410 4.28076 4.29858 4.31113 4.34019 4.42790 4.46520 4.49071 4.51749 4.61891 4.62465 4.68348 4.82152 4.83514 4.86196 4.87163 4.96569 4.97474 4.98088 5.04322 5.11847 5.14436 5.27373 5.38053 5.45930 5.46211 5.54732 6.06504 6.29789 6.55439 6.55711 7.26496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.048 3.952 4 H 0.095 0.905 5 C -0.154 4.154 6 C -0.099 4.099 7 H 0.100 0.900 8 C -0.108 4.108 9 C 0.125 3.875 10 N -0.719 5.719 11 C 0.512 3.488 12 O -0.565 6.565 13 C 0.037 3.963 14 N -0.508 5.508 15 C 0.026 3.974 16 C 0.129 3.871 17 C -0.100 4.100 18 C -0.066 4.066 19 O -0.541 6.541 20 Si 0.787 3.213 21 C -0.062 4.062 22 C -0.185 4.185 23 C 0.509 3.491 24 F -0.178 7.178 25 F -0.178 7.178 26 F -0.180 7.180 27 C -0.052 4.052 28 C -0.138 4.138 29 C -0.129 4.129 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.417 0.583 40 H 0.128 0.872 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.371 0.629 47 H -0.264 1.264 48 H -0.294 1.294 49 H 0.151 0.849 50 H 0.157 0.843 51 H 0.160 0.840 52 H 0.080 0.920 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.721 -2.420 -7.023 7.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C -0.010 4.010 4 H 0.113 0.887 5 C -0.191 4.191 6 C -0.118 4.118 7 H 0.119 0.881 8 C -0.145 4.145 9 C 0.001 3.999 10 N -0.373 5.373 11 C 0.298 3.702 12 O -0.443 6.443 13 C -0.091 4.091 14 N -0.229 5.229 15 C -0.120 4.120 16 C 0.035 3.965 17 C -0.101 4.101 18 C -0.175 4.175 19 O -0.347 6.347 20 Si 0.689 3.311 21 C -0.080 4.080 22 C -0.186 4.186 23 C 0.455 3.545 24 F -0.159 7.159 25 F -0.160 7.160 26 F -0.161 7.161 27 C -0.071 4.071 28 C -0.158 4.158 29 C -0.166 4.166 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.254 0.746 40 H 0.146 0.854 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.219 0.781 47 H -0.189 1.189 48 H -0.221 1.221 49 H 0.168 0.832 50 H 0.175 0.825 51 H 0.178 0.822 52 H 0.099 0.901 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.059 -1.463 -5.013 5.222 hybrid contribution -0.168 0.638 -1.840 1.955 sum -0.109 -0.825 -6.853 6.903 Atomic orbital electron populations 1.22920 0.80156 1.03541 1.00581 1.87909 1.20952 1.28599 1.94774 1.23939 0.94547 0.84948 0.97561 0.88736 1.23599 0.97861 1.00713 0.96963 1.22192 0.93852 0.99563 0.96190 0.88133 1.21651 0.95992 0.98459 0.98417 1.21271 0.82219 0.99113 0.97290 1.45887 1.16035 1.32118 1.43220 1.20761 0.89003 0.81886 0.78562 1.90719 1.64741 1.31678 1.57205 1.22205 0.93229 0.97218 0.96494 1.59152 1.27982 1.03492 1.32300 1.22562 1.02923 0.88070 0.98455 1.18861 0.89187 0.96111 0.92345 1.20169 0.95187 1.00998 0.93774 1.25301 0.89608 0.91185 1.11398 1.86691 1.68773 1.45913 1.33307 0.92641 0.80715 0.85559 0.72186 1.20815 0.90731 0.96014 1.00417 1.19981 0.92094 1.10402 0.96126 1.18329 0.85022 0.74580 0.76552 1.93243 1.96328 1.30058 1.96260 1.93200 1.60056 1.85473 1.77248 1.93203 1.96794 1.86698 1.39394 1.21110 0.99750 0.94195 0.92056 1.21870 0.91553 1.00515 1.01842 1.23259 0.94702 1.00268 0.98404 0.93162 0.89075 0.93574 0.89794 0.91336 0.89496 0.90439 0.92985 0.92391 0.74634 0.85442 0.88053 0.90248 0.91776 0.93119 0.90935 0.78085 1.18950 1.22115 0.83168 0.82500 0.82227 0.90146 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 2 O -0.40 -1.57 10.71 -148.98 -1.60 -3.17 16 3 C 0.05 -0.03 4.31 31.12 0.13 0.10 16 4 H 0.09 -0.26 7.87 -2.39 -0.02 -0.28 16 5 C -0.15 0.30 7.46 31.12 0.23 0.53 16 6 C -0.10 0.51 3.65 -10.27 -0.04 0.48 16 7 H 0.10 -0.59 8.13 -2.39 -0.02 -0.61 16 8 C -0.11 0.81 5.16 30.59 0.16 0.97 16 9 C 0.12 -0.48 5.66 86.38 0.49 0.01 16 10 N -0.72 4.49 5.56 -463.06 -2.57 1.92 16 11 C 0.51 -0.72 7.55 87.66 0.66 -0.05 16 12 O -0.57 -4.74 14.31 -3.04 -0.04 -4.78 16 13 C 0.04 -0.26 4.90 85.56 0.42 0.16 16 14 N -0.51 1.01 3.19 -724.43 -2.31 -1.30 16 15 C 0.03 -0.03 8.94 127.69 1.14 1.12 16 16 C 0.13 -0.30 4.61 38.21 0.18 -0.13 16 17 C -0.10 -0.05 5.28 -19.74 -0.10 -0.15 16 18 C -0.07 -0.21 2.30 71.23 0.16 -0.05 16 19 O -0.54 -2.42 12.65 -148.98 -1.89 -4.30 16 20 Si 0.79 2.08 30.17 68.60 2.07 4.15 16 21 C -0.06 0.01 8.01 22.25 0.18 0.19 16 22 C -0.18 0.16 5.46 -19.84 -0.11 0.05 16 23 C 0.51 0.60 3.36 71.24 0.24 0.84 16 24 F -0.18 -0.45 17.30 44.97 0.78 0.33 16 25 F -0.18 -0.33 16.46 44.97 0.74 0.41 16 26 F -0.18 -0.51 16.46 44.97 0.74 0.23 16 27 C -0.05 0.23 9.39 22.25 0.21 0.44 16 28 C -0.14 0.82 8.70 22.40 0.19 1.02 16 29 C -0.13 0.44 7.47 31.12 0.23 0.67 16 30 H 0.05 -0.14 8.14 -2.39 -0.02 -0.16 16 31 H 0.09 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.08 -0.03 7.90 -2.38 -0.02 -0.05 16 34 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 36 H 0.08 -0.59 7.84 -2.38 -0.02 -0.61 16 37 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.42 -5.24 8.47 -92.71 -0.79 -6.02 16 40 H 0.13 -1.31 8.06 -2.38 -0.02 -1.33 16 41 H 0.10 -1.24 7.46 -2.39 -0.02 -1.26 16 42 H 0.08 0.28 5.88 -2.39 -0.01 0.26 16 43 H 0.06 0.04 8.12 -2.39 -0.02 0.02 16 44 H 0.05 -0.26 7.49 -2.38 -0.02 -0.28 16 45 H 0.07 0.40 7.78 -2.39 -0.02 0.38 16 46 H 0.37 0.49 8.38 -74.06 -0.62 -0.13 16 47 H -0.26 -1.34 7.11 99.48 0.71 -0.63 16 48 H -0.29 -2.85 7.11 99.48 0.71 -2.14 16 49 H 0.15 -0.35 4.67 -2.91 -0.01 -0.36 16 50 H 0.16 -1.23 7.60 -2.91 -0.02 -1.25 16 51 H 0.16 -1.75 7.16 -2.91 -0.02 -1.78 16 52 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 53 H 0.09 -0.21 8.10 -2.39 -0.02 -0.23 16 Total: 0.00 -18.54 440.16 1.12 -17.41 By element: Atomic # 1 Polarization: -17.89 SS G_CDS: -0.41 Total: -18.30 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 5.61 Total: 7.40 kcal Atomic # 7 Polarization: 5.50 SS G_CDS: -4.88 Total: 0.62 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -3.52 Total: -12.25 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 2.26 Total: 0.96 kcal Atomic # 14 Polarization: 2.08 SS G_CDS: 2.07 Total: 4.15 kcal Total: -18.54 1.12 -17.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_6406254.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.510 kcal (2) G-P(sol) polarization free energy of solvation -18.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds