Wall clock time and date at job start Sun Mar 7 2021 05:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 H 1.09004 * 112.85245 * 18.80292 * 3 2 1 5 5 C 1.53780 * 113.61540 * 149.99641 * 3 2 1 6 6 C 1.53781 * 87.08277 * 139.98033 * 5 3 2 7 7 H 1.08997 * 113.61562 * 89.11888 * 6 5 3 8 8 C 1.53005 * 113.61680 * 219.93751 * 6 5 3 9 9 C 1.52998 * 109.47221 * 184.99795 * 8 6 5 10 10 N 1.46502 * 109.46835 * 180.02562 * 9 8 6 11 11 C 1.34779 * 119.99398 * 179.97438 * 10 9 8 12 12 O 1.21625 * 120.00444 * 0.02562 * 11 10 9 13 13 C 1.47260 * 119.99522 * 179.97438 * 11 10 9 14 14 C 1.36772 * 126.94047 * 179.71180 * 13 11 10 15 15 C 1.50700 * 125.80316 * 359.97438 * 14 13 11 16 16 N 1.34665 * 108.39642 * 179.84051 * 14 13 11 17 17 C 1.36445 * 110.29729 * 0.44716 * 16 14 13 18 18 C 1.50693 * 125.57279 * 179.74949 * 17 16 14 19 19 O 1.42902 * 109.47305 * 64.99825 * 18 17 16 20 20 Si 1.86300 * 109.47574 * 184.99866 * 18 17 16 21 21 C 1.34486 * 108.85790 * 359.72455 * 17 16 14 22 22 C 1.53780 * 87.08133 * 334.56873 * 6 5 3 23 23 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 24 24 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 26 26 H 1.09003 * 113.62173 * 254.53182 * 5 3 2 27 27 H 1.09005 * 113.60865 * 25.43478 * 5 3 2 28 28 H 1.08996 * 109.46854 * 305.00568 * 8 6 5 29 29 H 1.09004 * 109.46619 * 65.00014 * 8 6 5 30 30 H 1.09000 * 109.46958 * 300.00099 * 9 8 6 31 31 H 1.09004 * 109.46497 * 60.00157 * 9 8 6 32 32 H 0.96993 * 120.00145 * 0.02562 * 10 9 8 33 33 H 1.08997 * 109.46807 * 89.99695 * 15 14 13 34 34 H 1.08991 * 109.47285 * 210.00106 * 15 14 13 35 35 H 1.09005 * 109.46873 * 330.00439 * 15 14 13 36 36 H 0.96994 * 124.85174 * 180.14802 * 16 14 13 37 37 H 1.09000 * 109.47557 * 304.99858 * 18 17 16 38 38 H 0.96699 * 114.00102 * 59.99979 * 19 18 17 39 39 H 1.48497 * 110.00383 * 180.02562 * 20 18 17 40 40 H 1.48504 * 109.99823 * 301.31950 * 20 18 17 41 41 H 1.07997 * 126.83536 * 180.02562 * 21 17 16 42 42 H 1.08999 * 113.61828 * 270.88247 * 22 6 5 43 43 H 1.08996 * 113.61735 * 139.97942 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3755 1.3720 0.7046 6 6 3.8227 2.3182 -0.4221 7 1 3.6222 3.3693 -0.2149 8 6 5.2550 2.0694 -0.8992 9 6 5.6430 3.1353 -1.9259 10 7 7.0143 2.8966 -2.3831 11 6 7.5725 3.7163 -3.2958 12 8 6.9381 4.6543 -3.7395 13 6 8.9511 3.4768 -3.7549 14 6 9.6507 4.2102 -4.6732 15 6 9.1401 5.4241 -5.4059 16 7 10.8745 3.6649 -4.8093 17 6 10.9981 2.5719 -4.0019 18 6 12.2222 1.7005 -3.8874 19 8 13.2988 2.4616 -3.3364 20 14 11.8521 0.2526 -2.7750 21 6 9.8491 2.3996 -3.3246 22 6 2.7535 1.6489 -1.3017 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.3384 1.8472 1.6849 27 1 3.9088 0.4213 0.7138 28 1 5.9350 2.1194 -0.0488 29 1 5.3189 1.0827 -1.3580 30 1 4.9630 3.0852 -2.7763 31 1 5.5791 4.1220 -1.4670 32 1 7.5201 2.1484 -2.0295 33 1 9.3719 6.3200 -4.8301 34 1 9.6182 5.4863 -6.3833 35 1 8.0606 5.3437 -5.5339 36 1 11.5674 3.9986 -5.4003 37 1 12.5030 1.3367 -4.8758 38 1 13.1185 2.8174 -2.4555 39 1 13.0517 -0.6142 -2.6534 40 1 11.4372 0.7359 -1.4335 41 1 9.6310 1.6231 -2.6064 42 1 3.1167 0.7740 -1.8410 43 1 2.2141 2.3476 -1.9412 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16488024_9865296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:17:19 Heat of formation + Delta-G solvation = -55.925956 kcal Electronic energy + Delta-G solvation = -23278.498320 eV Core-core repulsion = 19712.461176 eV Total energy + Delta-G solvation = -3566.037144 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46426 -40.63162 -40.03610 -37.89148 -37.49202 -35.85422 -32.94764 -32.57068 -31.18996 -29.01579 -27.70826 -26.69014 -26.09063 -24.98661 -23.08323 -22.47306 -21.44150 -20.75184 -20.29541 -19.17443 -17.66461 -17.25158 -17.02286 -16.81294 -16.67878 -16.48505 -16.31557 -15.97320 -15.57725 -15.39002 -15.21957 -14.73967 -14.59463 -14.47692 -13.94587 -13.87201 -13.56272 -13.41262 -13.36394 -13.33058 -12.99174 -12.93133 -12.35333 -12.23913 -12.21786 -11.90261 -11.69824 -11.47149 -11.19829 -10.87774 -10.81789 -10.37846 -10.15385 -9.82466 -9.19176 -4.84867 0.69897 1.17351 1.28165 1.68247 1.91935 2.15891 2.51825 2.52699 2.93329 3.37980 3.53601 3.55884 3.67200 3.86069 3.87274 3.93353 4.04738 4.16300 4.19308 4.34079 4.36241 4.44211 4.50066 4.51697 4.54935 4.66185 4.66787 4.71206 4.73239 4.85053 4.87836 4.90154 4.95541 5.01981 5.08363 5.15267 5.20672 5.31587 5.49898 5.54875 5.66593 5.86561 6.33398 6.41848 6.44336 6.67983 7.36100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.049 3.951 4 H 0.095 0.905 5 C -0.129 4.129 6 C -0.099 4.099 7 H 0.100 0.900 8 C -0.108 4.108 9 C 0.124 3.876 10 N -0.717 5.717 11 C 0.585 3.415 12 O -0.589 6.589 13 C -0.260 4.260 14 C 0.110 3.890 15 C -0.095 4.095 16 N -0.530 5.530 17 C -0.011 4.011 18 C -0.063 4.063 19 O -0.552 6.552 20 Si 0.793 3.207 21 C -0.157 4.157 22 C -0.153 4.153 23 H 0.046 0.954 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.413 0.587 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.427 0.573 37 H 0.127 0.873 38 H 0.389 0.611 39 H -0.301 1.301 40 H -0.274 1.274 41 H 0.171 0.829 42 H 0.085 0.915 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.007 -2.551 0.790 2.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.322 6.322 3 C -0.008 4.008 4 H 0.113 0.887 5 C -0.166 4.166 6 C -0.118 4.118 7 H 0.118 0.882 8 C -0.146 4.146 9 C 0.001 3.999 10 N -0.369 5.369 11 C 0.375 3.625 12 O -0.472 6.472 13 C -0.270 4.270 14 C -0.010 4.010 15 C -0.152 4.152 16 N -0.126 5.126 17 C -0.121 4.121 18 C -0.171 4.171 19 O -0.360 6.360 20 Si 0.696 3.304 21 C -0.181 4.181 22 C -0.190 4.190 23 H 0.065 0.935 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.249 0.751 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.266 0.734 37 H 0.145 0.855 38 H 0.238 0.762 39 H -0.229 1.229 40 H -0.199 1.199 41 H 0.189 0.811 42 H 0.103 0.897 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.251 -2.613 0.596 2.692 hybrid contribution 0.688 1.183 0.297 1.400 sum 0.939 -1.430 0.892 1.930 Atomic orbital electron populations 1.22921 0.80181 1.03519 1.00579 1.87909 1.20925 1.28582 1.94769 1.23923 0.94465 0.84935 0.97510 0.88707 1.23262 0.94789 1.00248 0.98341 1.22188 0.93675 0.99615 0.96339 0.88158 1.21662 0.96117 0.98502 0.98292 1.21317 0.81932 0.99202 0.97473 1.45701 1.15970 1.31935 1.43270 1.17605 0.85354 0.81231 0.78307 1.90728 1.64972 1.32519 1.58980 1.20116 0.95419 1.03305 1.08114 1.20599 0.85306 0.97044 0.98039 1.20571 1.02785 0.92424 0.99436 1.41607 1.12634 1.23335 1.35008 1.20903 0.98522 0.93421 0.99228 1.25061 0.84230 1.00075 1.07743 1.86574 1.40349 1.71197 1.37857 0.93470 0.83391 0.76244 0.77293 1.22020 0.92313 1.00214 1.03585 1.23596 0.97722 1.00757 0.96960 0.93522 0.89082 0.93221 0.90209 0.89328 0.89768 0.90192 0.92608 0.92500 0.75089 0.90196 0.89472 0.89906 0.73360 0.85476 0.76179 1.22883 1.19919 0.81142 0.89686 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.40 -1.79 10.71 -148.98 -1.60 -3.39 16 3 C 0.05 0.01 4.31 31.12 0.13 0.14 16 4 H 0.10 -0.19 7.87 -2.39 -0.02 -0.21 16 5 C -0.13 0.27 7.47 31.12 0.23 0.50 16 6 C -0.10 0.33 3.65 -10.27 -0.04 0.29 16 7 H 0.10 -0.40 8.13 -2.39 -0.02 -0.42 16 8 C -0.11 0.48 5.17 30.60 0.16 0.63 16 9 C 0.12 0.07 5.66 86.38 0.49 0.56 16 10 N -0.72 -0.94 5.55 -466.52 -2.59 -3.53 16 11 C 0.58 4.61 7.81 86.61 0.68 5.29 16 12 O -0.59 -8.89 14.82 -4.11 -0.06 -8.95 16 13 C -0.26 -1.20 6.29 -19.04 -0.12 -1.32 16 14 C 0.11 0.35 7.17 41.78 0.30 0.65 16 15 C -0.09 -0.17 9.88 71.24 0.70 0.53 16 16 N -0.53 0.58 5.90 -171.07 -1.01 -0.43 16 17 C -0.01 0.02 6.47 40.98 0.27 0.28 16 18 C -0.06 0.24 3.08 71.23 0.22 0.46 16 19 O -0.55 0.35 12.88 -148.98 -1.92 -1.56 16 20 Si 0.79 -4.29 30.58 68.60 2.10 -2.20 16 21 C -0.16 0.16 9.03 23.62 0.21 0.37 16 22 C -0.15 0.13 7.47 31.12 0.23 0.36 16 23 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 24 H 0.09 -0.19 8.14 -2.38 -0.02 -0.21 16 25 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H 0.09 -0.10 8.10 -2.38 -0.02 -0.12 16 28 H 0.08 -0.51 8.14 -2.39 -0.02 -0.53 16 29 H 0.08 -0.41 7.85 -2.38 -0.02 -0.42 16 30 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.41 -1.81 7.60 -92.71 -0.70 -2.52 16 33 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 34 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.08 0.55 6.47 -2.38 -0.02 0.54 16 36 H 0.43 -2.20 8.96 -92.71 -0.83 -3.03 16 37 H 0.13 -0.74 7.96 -2.39 -0.02 -0.76 16 38 H 0.39 -2.15 8.70 -74.06 -0.64 -2.79 16 39 H -0.30 -0.73 7.11 99.48 0.71 -0.03 16 40 H -0.27 0.61 7.11 99.48 0.71 1.32 16 41 H 0.17 -1.13 5.88 -2.91 -0.02 -1.15 16 42 H 0.08 0.05 7.90 -2.39 -0.02 0.03 16 43 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: 0.00 -19.34 355.80 -1.49 -20.83 By element: Atomic # 1 Polarization: -9.65 SS G_CDS: -1.11 Total: -10.75 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 4.70 Total: 9.97 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -3.60 Total: -3.95 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -3.58 Total: -13.90 kcal Atomic # 14 Polarization: -4.29 SS G_CDS: 2.10 Total: -2.20 kcal Total: -19.34 -1.49 -20.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16488024_9865296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.097 kcal (2) G-P(sol) polarization free energy of solvation -19.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds