Wall clock time and date at job start Sun Mar 7 2021 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47090 * 3.84202 * 3 2 1 5 5 C 1.53002 * 109.47021 * 123.83955 * 3 2 1 6 6 C 1.52996 * 109.46972 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47114 * 299.99749 * 6 5 3 8 8 H 1.08996 * 109.47966 * 300.00526 * 7 6 5 9 9 C 1.53007 * 109.46791 * 179.97438 * 7 6 5 10 10 N 1.46504 * 109.46613 * 175.00244 * 9 7 6 11 11 C 1.34775 * 119.99708 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00067 * 0.02562 * 11 10 9 13 13 C 1.50698 * 120.00364 * 180.02562 * 11 10 9 14 14 C 1.50696 * 109.47716 * 180.02562 * 13 11 10 15 15 C 1.38235 * 119.99693 * 269.72922 * 14 13 11 16 16 C 1.38235 * 120.00098 * 179.78646 * 15 14 13 17 17 C 1.38242 * 119.99633 * 0.45823 * 16 15 14 18 18 C 1.50696 * 119.99645 * 179.78856 * 17 16 15 19 19 O 1.42910 * 109.46627 * 119.97914 * 18 17 16 20 20 Si 1.86296 * 109.47482 * 359.97438 * 18 17 16 21 21 C 1.38230 * 120.00062 * 359.77079 * 17 16 15 22 22 C 1.38230 * 120.00453 * 89.99307 * 14 13 11 23 23 C 1.53002 * 109.46673 * 60.00467 * 7 6 5 24 24 C 1.52996 * 109.47343 * 299.99618 * 23 7 6 25 25 H 1.08996 * 109.47407 * 300.00412 * 5 3 2 26 26 H 1.09004 * 109.46733 * 59.99729 * 5 3 2 27 27 H 1.08996 * 109.47134 * 60.00785 * 6 5 3 28 28 H 1.09001 * 109.46993 * 180.02562 * 6 5 3 29 29 H 1.08992 * 109.47354 * 295.00668 * 9 7 6 30 30 H 1.08994 * 109.46790 * 55.01015 * 9 7 6 31 31 H 0.96994 * 120.00180 * 0.02562 * 10 9 7 32 32 H 1.09009 * 109.46717 * 300.00267 * 13 11 10 33 33 H 1.08998 * 109.47111 * 59.99551 * 13 11 10 34 34 H 1.08002 * 120.00150 * 359.97438 * 15 14 13 35 35 H 1.07995 * 120.00494 * 180.24760 * 16 15 14 36 36 H 1.08996 * 109.47569 * 239.97386 * 18 17 16 37 37 H 0.96697 * 113.99856 * 299.99787 * 19 18 17 38 38 H 1.48502 * 110.00155 * 179.97438 * 20 18 17 39 39 H 1.48500 * 110.00275 * 301.31642 * 20 18 17 40 40 H 1.07999 * 119.99934 * 179.97438 * 21 17 16 41 41 H 1.08007 * 119.99883 * 359.97438 * 22 14 13 42 42 H 1.09004 * 109.47059 * 60.00016 * 23 7 6 43 43 H 1.09004 * 109.46930 * 179.97438 * 23 7 6 44 44 H 1.09000 * 109.46870 * 300.00214 * 24 23 7 45 45 H 1.09001 * 109.47372 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9718 -1.0245 -0.0689 5 6 3.1176 0.8042 -1.1982 6 6 4.6476 0.8054 -1.1978 7 6 5.1567 1.4420 0.0969 8 1 4.7926 2.4671 0.1657 9 6 6.6868 1.4426 0.0975 10 7 7.1743 2.1579 1.2795 11 6 8.4992 2.2864 1.4905 12 8 9.2879 1.8103 0.7016 13 6 9.0009 3.0216 2.7065 14 6 10.5078 3.0235 2.7065 15 6 11.2002 2.0025 3.3303 16 6 12.5825 2.0018 3.3265 17 6 13.2725 3.0271 2.7070 18 6 14.7795 3.0288 2.7070 19 8 15.2557 3.0015 1.3599 20 14 15.4023 1.5269 3.6165 21 6 12.5801 4.0505 2.0873 22 6 11.1978 4.0488 2.0874 23 6 4.6471 0.6384 1.2951 24 6 3.1172 0.6372 1.2948 25 1 2.7544 0.3510 -2.1205 26 1 2.7537 1.8294 -1.1293 27 1 5.0117 -0.2196 -1.2665 28 1 5.0106 1.3782 -2.0511 29 1 7.0506 0.4154 0.1187 30 1 7.0502 1.9383 -0.8026 31 1 6.5436 2.5390 1.9102 32 1 8.6366 4.0488 2.6859 33 1 8.6378 2.5254 3.6065 34 1 10.6611 1.2038 3.8181 35 1 13.1235 1.2021 3.8104 36 1 15.1419 3.9296 3.2022 37 1 14.9712 2.2257 0.8578 38 1 16.8872 1.5166 3.6230 39 1 14.8879 1.5271 5.0095 40 1 13.1192 4.8517 1.6037 41 1 10.6568 4.8485 1.6033 42 1 5.0114 -0.3867 1.2264 43 1 5.0102 1.0917 2.2175 44 1 2.7530 1.6622 1.3634 45 1 2.7541 0.0650 2.1486 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16496578_12335836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:26:11 Heat of formation + Delta-G solvation = -35.165696 kcal Electronic energy + Delta-G solvation = -24942.717319 eV Core-core repulsion = 21311.584179 eV Total energy + Delta-G solvation = -3631.133141 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.15154 -40.35969 -39.70630 -37.68580 -37.42711 -35.64577 -34.02704 -32.52298 -31.89995 -31.67391 -29.80057 -27.23267 -25.48190 -23.77855 -23.66613 -23.02237 -22.03936 -21.28392 -20.66253 -18.67099 -18.44111 -17.96220 -17.32968 -16.87101 -16.59026 -16.23844 -16.09366 -15.96420 -15.58651 -15.26268 -15.04186 -14.85725 -14.72443 -14.59238 -14.46985 -14.22708 -14.08477 -14.02333 -13.49568 -13.26135 -13.10140 -13.02867 -12.94468 -12.76510 -12.59452 -12.23915 -11.97990 -11.95896 -11.91778 -11.67432 -11.50069 -11.23619 -10.98802 -10.85296 -10.43340 -9.96714 -9.84475 -9.56569 -4.99585 0.27755 0.48625 1.31911 1.61764 1.75162 1.76528 1.79253 1.93821 2.29642 2.84748 2.94872 3.51593 3.67165 3.77453 3.81283 3.83697 3.85616 3.94924 4.08471 4.11254 4.17384 4.31993 4.40097 4.41976 4.48927 4.50653 4.51435 4.58885 4.63203 4.67405 4.75445 4.80969 4.88300 4.98583 5.06277 5.08090 5.12226 5.21251 5.23484 5.31471 5.33475 5.41355 5.45720 5.54553 5.56735 5.62917 5.65826 6.05418 6.59078 6.66609 6.73089 7.38292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.236 3.764 3 C 0.009 3.991 4 H 0.137 0.863 5 C -0.107 4.107 6 C -0.108 4.108 7 C -0.092 4.092 8 H 0.088 0.912 9 C 0.125 3.875 10 N -0.718 5.718 11 C 0.511 3.489 12 O -0.580 6.580 13 C -0.100 4.100 14 C -0.071 4.071 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.129 4.129 18 C -0.077 4.077 19 O -0.558 6.558 20 Si 0.775 3.225 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.109 4.109 24 C -0.108 4.108 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.416 0.584 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.105 0.895 37 H 0.394 0.606 38 H -0.299 1.299 39 H -0.281 1.281 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 -1.034 2.340 2.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.081 4.081 3 C -0.012 4.012 4 H 0.154 0.846 5 C -0.146 4.146 6 C -0.146 4.146 7 C -0.111 4.111 8 H 0.106 0.894 9 C 0.001 3.999 10 N -0.371 5.371 11 C 0.299 3.701 12 O -0.460 6.460 13 C -0.139 4.139 14 C -0.071 4.071 15 C -0.128 4.128 16 C -0.142 4.142 17 C -0.129 4.129 18 C -0.187 4.187 19 O -0.366 6.366 20 Si 0.681 3.319 21 C -0.127 4.127 22 C -0.135 4.135 23 C -0.146 4.146 24 C -0.147 4.147 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.254 0.746 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.122 0.878 37 H 0.243 0.757 38 H -0.227 1.227 39 H -0.208 1.208 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.607 -1.120 2.618 3.270 hybrid contribution -0.063 0.942 0.031 0.945 sum -1.671 -0.178 2.649 3.137 Atomic orbital electron populations 1.81304 1.15400 1.11028 1.10600 1.30000 0.95772 0.91110 0.91215 1.19286 0.78414 1.04664 0.98846 0.84593 1.21525 0.96327 1.00452 0.96302 1.21469 0.93629 1.02452 0.97026 1.21400 0.92138 1.01383 0.96198 0.89351 1.21368 0.94295 0.96655 0.87576 1.45934 1.06579 1.57445 1.27164 1.20919 0.82440 0.79544 0.87220 1.90748 1.56525 1.50065 1.48625 1.20764 0.91538 1.03989 0.97612 1.19606 0.95233 0.94809 0.97485 1.21245 0.94015 0.98250 0.99241 1.21172 0.95043 0.97972 0.99964 1.20398 0.96058 0.96225 1.00264 1.25225 0.92154 1.11306 0.90001 1.86446 1.75914 1.50648 1.23591 0.93590 0.76516 0.83250 0.78554 1.21069 0.94366 0.98406 0.98878 1.21236 0.94200 0.99134 0.98931 1.21590 0.93424 1.01504 0.98105 1.21551 0.96583 1.01702 0.94850 0.90754 0.91075 0.90221 0.90817 0.92125 0.92884 0.74624 0.85591 0.84943 0.83883 0.84200 0.87801 0.75672 1.22721 1.20806 0.86135 0.85137 0.90560 0.89996 0.90889 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -4.60 18.54 20.01 0.37 -4.23 16 2 C 0.24 0.06 14.65 89.44 1.31 1.37 16 3 C 0.01 -0.09 2.57 -12.60 -0.03 -0.12 16 4 H 0.14 -1.77 8.14 -2.39 -0.02 -1.79 16 5 C -0.11 1.08 5.16 30.59 0.16 1.24 16 6 C -0.11 1.23 5.20 30.59 0.16 1.39 16 7 C -0.09 1.12 2.23 -10.79 -0.02 1.10 16 8 H 0.09 -1.14 8.14 -2.39 -0.02 -1.15 16 9 C 0.12 -0.89 5.06 86.38 0.44 -0.45 16 10 N -0.72 5.84 5.28 -463.05 -2.45 3.39 16 11 C 0.51 -0.86 7.82 87.66 0.69 -0.17 16 12 O -0.58 -5.17 16.03 -3.05 -0.05 -5.22 16 13 C -0.10 0.69 5.83 29.10 0.17 0.86 16 14 C -0.07 0.00 4.37 -19.87 -0.09 -0.09 16 15 C -0.11 0.00 9.70 22.27 0.22 0.21 16 16 C -0.12 -0.11 8.67 22.27 0.19 0.08 16 17 C -0.13 -0.39 5.39 -19.87 -0.11 -0.49 16 18 C -0.08 -0.17 2.82 71.23 0.20 0.03 16 19 O -0.56 -1.95 12.77 -148.98 -1.90 -3.85 16 20 Si 0.77 -0.29 29.79 68.60 2.04 1.76 16 21 C -0.11 -0.46 9.61 22.27 0.21 -0.24 16 22 C -0.12 -0.27 9.70 22.27 0.22 -0.05 16 23 C -0.11 1.47 5.08 30.59 0.16 1.63 16 24 C -0.11 1.25 5.16 30.59 0.16 1.40 16 25 H 0.07 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H 0.07 -0.65 8.14 -2.39 -0.02 -0.67 16 27 H 0.08 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.07 -0.76 8.14 -2.39 -0.02 -0.78 16 29 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.05 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.42 -6.03 7.65 -92.71 -0.71 -6.74 16 32 H 0.13 -1.41 8.09 -2.38 -0.02 -1.43 16 33 H 0.13 -1.65 8.08 -2.39 -0.02 -1.67 16 34 H 0.14 -0.66 8.06 -2.91 -0.02 -0.68 16 35 H 0.14 -0.44 4.88 -2.91 -0.01 -0.45 16 36 H 0.10 0.33 7.96 -2.39 -0.02 0.31 16 37 H 0.39 -1.50 8.70 -74.06 -0.64 -2.14 16 38 H -0.30 -2.05 7.11 99.48 0.71 -1.35 16 39 H -0.28 -0.95 7.11 99.48 0.71 -0.24 16 40 H 0.12 0.48 8.06 -2.91 -0.02 0.46 16 41 H 0.13 -0.09 8.06 -2.91 -0.02 -0.12 16 42 H 0.08 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.08 -1.24 7.18 -2.38 -0.02 -1.26 16 44 H 0.07 -0.79 8.14 -2.39 -0.02 -0.81 16 45 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 Total: 0.00 -26.73 371.93 1.73 -25.01 By element: Atomic # 1 Polarization: -24.24 SS G_CDS: -0.31 Total: -24.55 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 4.02 Total: 7.70 kcal Atomic # 7 Polarization: 1.24 SS G_CDS: -2.08 Total: -0.84 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -1.95 Total: -9.07 kcal Atomic # 14 Polarization: -0.29 SS G_CDS: 2.04 Total: 1.76 kcal Total: -26.73 1.73 -25.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16496578_12335836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.160 kcal (2) G-P(sol) polarization free energy of solvation -26.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds