Wall clock time and date at job start Sun Mar 7 2021 06:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46700 * 163.31445 * 3 2 1 5 5 C 1.53006 * 109.46932 * 283.30826 * 3 2 1 6 6 C 1.52998 * 109.47041 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47190 * 300.00368 * 6 5 3 8 8 H 1.09004 * 109.46615 * 299.99557 * 7 6 5 9 9 C 1.52998 * 109.47190 * 180.02562 * 7 6 5 10 10 N 1.46506 * 109.47245 * 174.99507 * 9 7 6 11 11 C 1.34768 * 120.00221 * 179.97438 * 10 9 7 12 12 O 1.21574 * 120.00103 * 359.97438 * 11 10 9 13 13 C 1.47716 * 120.00360 * 180.02562 * 11 10 9 14 14 C 1.39705 * 120.02716 * 179.97438 * 13 11 10 15 15 C 1.37673 * 119.97563 * 179.97438 * 14 13 11 16 16 C 1.39498 * 120.02186 * 359.97438 * 15 14 13 17 17 C 1.48286 * 119.97348 * 179.97438 * 16 15 14 18 18 C 1.39393 * 120.12558 * 359.72418 * 17 16 15 19 19 C 1.38006 * 119.87300 * 179.76323 * 18 17 16 20 20 C 1.38337 * 120.12059 * 0.51647 * 19 18 17 21 21 C 1.50697 * 119.87010 * 179.71883 * 20 19 18 22 22 O 1.42900 * 109.47366 * 245.01920 * 21 20 19 23 23 Si 1.86301 * 109.47211 * 5.01961 * 21 20 19 24 24 C 1.38333 * 120.25792 * 359.73337 * 20 19 18 25 25 C 1.37995 * 120.13006 * 0.02562 * 24 20 19 26 26 C 1.39506 * 120.05182 * 0.27547 * 16 15 14 27 27 C 1.37660 * 120.02232 * 359.48492 * 26 16 15 28 28 C 1.52997 * 109.47506 * 59.99679 * 7 6 5 29 29 C 1.52998 * 109.47158 * 300.00341 * 28 7 6 30 30 H 1.08997 * 109.47146 * 60.00306 * 5 3 2 31 31 H 1.09004 * 109.46986 * 300.00570 * 5 3 2 32 32 H 1.08992 * 109.47328 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.46980 * 59.99702 * 6 5 3 34 34 H 1.09000 * 109.47025 * 54.99801 * 9 7 6 35 35 H 1.08997 * 109.47032 * 294.99232 * 9 7 6 36 36 H 0.97005 * 119.99836 * 0.02562 * 10 9 7 37 37 H 1.07995 * 120.01573 * 359.95944 * 14 13 11 38 38 H 1.08002 * 119.98641 * 180.02562 * 15 14 13 39 39 H 1.08005 * 120.06657 * 0.02605 * 18 17 16 40 40 H 1.07995 * 119.93764 * 180.22895 * 19 18 17 41 41 H 1.08998 * 109.47752 * 125.01400 * 21 20 19 42 42 H 0.96699 * 113.99784 * 59.99481 * 22 21 20 43 43 H 1.48495 * 110.00122 * 58.67913 * 23 21 20 44 44 H 1.48501 * 110.00227 * 180.02562 * 23 21 20 45 45 H 1.08001 * 119.93398 * 179.97438 * 24 20 19 46 46 H 1.07997 * 120.06910 * 179.97438 * 25 24 20 47 47 H 1.08000 * 119.98554 * 179.75021 * 26 16 15 48 48 H 1.08004 * 120.01016 * 180.24041 * 27 26 16 49 49 H 1.08997 * 109.46951 * 60.00254 * 28 7 6 50 50 H 1.09003 * 109.47318 * 180.02562 * 28 7 6 51 51 H 1.09001 * 109.47556 * 299.99661 * 29 28 7 52 52 H 1.09005 * 109.47608 * 179.97438 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9708 0.9852 -0.2951 5 6 3.1181 -0.3312 1.4038 6 6 4.6481 -0.3299 1.4040 7 6 5.1591 -1.3789 0.4144 8 1 4.7966 -2.3636 0.7095 9 6 6.6891 -1.3780 0.4151 10 7 7.1784 -2.4614 -0.4413 11 6 8.5036 -2.6535 -0.5938 12 8 9.2930 -1.9276 -0.0213 13 6 8.9970 -3.7454 -1.4577 14 6 10.3706 -3.9447 -1.6166 15 6 10.8294 -4.9631 -2.4216 16 6 9.9231 -5.7961 -3.0779 17 6 10.4184 -6.8922 -3.9451 18 6 11.7884 -7.0887 -4.1106 19 6 12.2436 -8.1136 -4.9150 20 6 11.3430 -8.9383 -5.5649 21 6 11.8463 -10.0517 -6.4470 22 8 11.4665 -9.7958 -7.8006 23 14 13.7033 -10.1454 -6.3302 24 6 9.9823 -8.7448 -5.4085 25 6 9.5155 -7.7264 -4.6028 26 6 8.5512 -5.5947 -2.9241 27 6 8.0904 -4.5802 -2.1158 28 6 4.6490 -1.0471 -0.9893 29 6 3.1190 -1.0484 -0.9895 30 1 2.7553 -1.3157 1.6990 31 1 2.7543 0.4164 2.1087 32 1 5.0115 -0.5667 2.4039 33 1 5.0106 0.6549 1.1090 34 1 7.0521 -1.5266 1.4320 35 1 7.0520 -0.4229 0.0356 36 1 6.5486 -3.0399 -0.8990 37 1 11.0724 -3.3001 -1.1085 38 1 11.8912 -5.1176 -2.5442 39 1 12.4924 -6.4428 -3.6069 40 1 13.3049 -8.2690 -5.0410 41 1 11.4137 -10.9975 -6.1208 42 1 11.8169 -8.9683 -8.1576 43 1 14.1125 -10.3795 -4.9220 44 1 14.2122 -11.2392 -7.1960 45 1 9.2838 -9.3915 -5.9187 46 1 8.4530 -7.5759 -4.4817 47 1 7.8506 -6.2378 -3.4359 48 1 7.0282 -4.4270 -1.9938 49 1 5.0115 -0.0624 -1.2843 50 1 5.0127 -1.7947 -1.6943 51 1 2.7564 -2.0331 -0.6946 52 1 2.7555 -0.8116 -1.9895 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16496578_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:27:24 Heat of formation + Delta-G solvation = -0.726058 kcal Electronic energy + Delta-G solvation = -31851.034916 eV Core-core repulsion = 27552.953009 eV Total energy + Delta-G solvation = -4298.081907 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.178 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.43784 -40.74056 -40.02945 -39.14228 -37.54754 -37.44776 -35.81505 -34.06925 -32.80478 -32.37304 -31.69980 -31.52838 -30.73879 -27.70671 -26.56810 -24.63048 -24.39946 -23.65641 -22.99682 -22.52878 -22.11667 -21.27758 -20.74731 -19.23554 -18.67124 -18.40209 -17.71744 -17.22305 -16.77460 -16.56473 -16.29351 -16.07519 -15.90721 -15.75248 -15.38617 -15.27239 -15.11646 -14.94593 -14.92383 -14.84235 -14.67548 -14.37971 -14.28476 -14.15628 -14.05683 -13.99797 -13.55399 -13.46097 -13.12474 -13.11379 -13.04752 -12.71735 -12.66174 -12.51178 -12.10215 -11.98999 -11.94653 -11.92719 -11.58887 -11.53225 -11.27882 -11.04873 -10.94230 -10.74095 -10.40562 -10.09258 -10.02513 -9.94014 -9.04417 -5.00656 -0.65521 0.38645 0.42278 0.53196 1.31190 1.63058 1.76200 1.79017 1.84418 1.96381 2.15864 2.64195 2.93994 3.04517 3.43398 3.56182 3.65590 3.71203 3.75890 3.79449 3.80425 3.85052 3.91812 4.03812 4.07963 4.13346 4.27406 4.31558 4.31813 4.39492 4.40483 4.48726 4.48912 4.55903 4.61875 4.67268 4.71016 4.77475 4.83062 4.91513 4.94602 4.97337 5.04542 5.11089 5.16281 5.20313 5.21169 5.23589 5.29145 5.30832 5.31633 5.40797 5.44501 5.46340 5.51788 5.61863 5.68097 5.83497 5.95110 6.51294 6.58855 6.76501 7.18959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.236 3.764 3 C 0.009 3.991 4 H 0.136 0.864 5 C -0.107 4.107 6 C -0.107 4.107 7 C -0.093 4.093 8 H 0.090 0.910 9 C 0.122 3.878 10 N -0.710 5.710 11 C 0.554 3.446 12 O -0.583 6.583 13 C -0.151 4.151 14 C -0.072 4.072 15 C -0.123 4.123 16 C -0.024 4.024 17 C -0.059 4.059 18 C -0.107 4.107 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.073 4.073 22 O -0.555 6.555 23 Si 0.771 3.229 24 C -0.103 4.103 25 C -0.108 4.108 26 C -0.121 4.121 27 C -0.074 4.074 28 C -0.111 4.111 29 C -0.108 4.108 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.414 0.586 37 H 0.128 0.872 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.106 0.894 42 H 0.395 0.605 43 H -0.287 1.287 44 H -0.301 1.301 45 H 0.130 0.870 46 H 0.146 0.854 47 H 0.154 0.846 48 H 0.159 0.841 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.074 0.926 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 0.130 -2.164 3.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.081 4.081 3 C -0.012 4.012 4 H 0.154 0.846 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.112 4.112 8 H 0.108 0.892 9 C -0.001 4.001 10 N -0.362 5.362 11 C 0.343 3.657 12 O -0.464 6.464 13 C -0.154 4.154 14 C -0.091 4.091 15 C -0.140 4.140 16 C -0.025 4.025 17 C -0.060 4.060 18 C -0.125 4.125 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.184 4.184 22 O -0.363 6.363 23 Si 0.678 3.322 24 C -0.121 4.121 25 C -0.126 4.126 26 C -0.139 4.139 27 C -0.092 4.092 28 C -0.148 4.148 29 C -0.146 4.146 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.253 0.747 37 H 0.146 0.854 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.124 0.876 42 H 0.245 0.755 43 H -0.214 1.214 44 H -0.230 1.230 45 H 0.148 0.852 46 H 0.164 0.836 47 H 0.172 0.828 48 H 0.176 0.824 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.093 0.907 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.481 -0.372 -1.456 2.110 hybrid contribution -0.469 -0.496 0.191 0.708 sum 1.013 -0.868 -1.265 1.838 Atomic orbital electron populations 1.81307 1.15371 1.10977 1.10607 1.29978 0.95746 0.91136 0.91224 1.19279 0.78452 1.04301 0.99194 0.84611 1.21526 0.96228 1.03149 0.93678 1.21466 0.93692 0.99714 0.99635 1.21417 0.91777 1.01296 0.96689 0.89173 1.21488 0.94615 0.89808 0.94177 1.45832 1.06072 1.34754 1.49562 1.18519 0.82883 0.83683 0.80665 1.90780 1.56723 1.48874 1.50072 1.20028 0.94964 0.98458 1.01979 1.21270 0.94795 0.96723 0.96285 1.21386 1.00947 0.94733 0.96950 1.19144 0.93976 0.93998 0.95343 1.18950 0.93834 0.95496 0.97671 1.21495 0.94983 0.97861 0.98147 1.21136 0.99616 0.95305 0.97515 1.20523 0.94582 0.97890 0.99063 1.25148 1.12146 0.97932 0.83124 1.86474 1.78124 1.46873 1.24856 0.93777 0.73915 0.86414 0.78098 1.21101 0.95165 0.97963 0.97878 1.21514 1.00612 0.94418 0.96029 1.21469 0.94768 0.98558 0.99080 1.21467 1.00284 0.93209 0.94275 1.21605 0.93664 1.03557 0.96003 1.21547 0.96328 0.98235 0.98521 0.90987 0.90643 0.90607 0.90135 0.92235 0.91728 0.74749 0.85442 0.83473 0.83522 0.83681 0.87646 0.75476 1.21382 1.22979 0.85175 0.83632 0.82805 0.82368 0.90492 0.90261 0.90748 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -4.65 18.54 20.01 0.37 -4.28 16 2 C 0.24 0.10 14.65 89.44 1.31 1.41 16 3 C 0.01 -0.08 2.56 -12.60 -0.03 -0.11 16 4 H 0.14 -1.72 8.14 -2.39 -0.02 -1.74 16 5 C -0.11 1.06 5.16 30.60 0.16 1.22 16 6 C -0.11 1.20 5.20 30.59 0.16 1.36 16 7 C -0.09 1.05 2.22 -10.80 -0.02 1.03 16 8 H 0.09 -1.11 8.14 -2.38 -0.02 -1.13 16 9 C 0.12 -0.69 5.07 86.38 0.44 -0.25 16 10 N -0.71 3.38 5.23 -466.10 -2.44 0.94 16 11 C 0.55 1.81 7.77 86.75 0.67 2.48 16 12 O -0.58 -7.19 16.33 -3.95 -0.06 -7.25 16 13 C -0.15 -0.09 5.88 -20.06 -0.12 -0.21 16 14 C -0.07 -0.15 9.58 22.49 0.22 0.07 16 15 C -0.12 0.12 9.41 22.44 0.21 0.33 16 16 C -0.02 0.04 5.88 -19.99 -0.12 -0.08 16 17 C -0.06 0.10 5.88 -20.04 -0.12 -0.02 16 18 C -0.11 0.31 9.43 22.49 0.21 0.52 16 19 C -0.12 0.38 8.65 22.24 0.19 0.58 16 20 C -0.12 0.19 5.36 -19.82 -0.11 0.09 16 21 C -0.07 0.12 2.80 71.23 0.20 0.32 16 22 O -0.56 0.45 12.83 -148.98 -1.91 -1.46 16 23 Si 0.77 -2.22 29.79 68.60 2.04 -0.18 16 24 C -0.10 0.13 9.67 22.23 0.21 0.35 16 25 C -0.11 0.28 9.43 22.49 0.21 0.49 16 26 C -0.12 0.57 9.41 22.44 0.21 0.78 16 27 C -0.07 0.39 9.52 22.49 0.21 0.60 16 28 C -0.11 1.39 5.08 30.59 0.16 1.55 16 29 C -0.11 1.19 5.16 30.59 0.16 1.35 16 30 H 0.07 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H 0.07 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 33 H 0.08 -0.95 8.14 -2.38 -0.02 -0.97 16 34 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 36 H 0.41 -4.57 5.67 -92.70 -0.53 -5.09 16 37 H 0.13 0.47 7.64 -2.91 -0.02 0.45 16 38 H 0.15 -0.71 6.19 -2.91 -0.02 -0.73 16 39 H 0.15 -0.98 6.19 -2.91 -0.02 -1.00 16 40 H 0.15 -1.06 4.89 -2.91 -0.01 -1.07 16 41 H 0.11 -0.03 7.96 -2.39 -0.02 -0.05 16 42 H 0.40 -3.48 8.70 -74.06 -0.64 -4.12 16 43 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 44 H -0.30 -1.52 7.11 99.48 0.71 -0.81 16 45 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 46 H 0.15 -1.01 6.19 -2.91 -0.02 -1.03 16 47 H 0.15 -1.45 6.19 -2.91 -0.02 -1.47 16 48 H 0.16 -1.97 6.39 -2.91 -0.02 -1.99 16 49 H 0.08 -0.94 8.14 -2.39 -0.02 -0.96 16 50 H 0.08 -1.10 7.18 -2.39 -0.02 -1.11 16 51 H 0.07 -0.79 8.14 -2.39 -0.02 -0.81 16 52 H 0.08 -0.80 8.14 -2.38 -0.02 -0.82 16 Total: 0.00 -27.86 421.50 2.26 -25.60 By element: Atomic # 1 Polarization: -27.08 SS G_CDS: -0.16 Total: -27.23 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 4.42 Total: 13.86 kcal Atomic # 7 Polarization: -1.27 SS G_CDS: -2.07 Total: -3.34 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -1.98 Total: -8.71 kcal Atomic # 14 Polarization: -2.22 SS G_CDS: 2.04 Total: -0.18 kcal Total: -27.86 2.26 -25.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16496578_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.874 kcal (2) G-P(sol) polarization free energy of solvation -27.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds