Wall clock time and date at job start Sun Mar 7 2021 06:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.08998 * 109.46967 * 232.74190 * 3 2 1 5 5 C 1.52999 * 109.47301 * 352.74043 * 3 2 1 6 6 C 1.53005 * 109.47243 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46991 * 300.00418 * 6 5 3 8 8 H 1.08998 * 109.46555 * 299.99537 * 7 6 5 9 9 C 1.53005 * 109.46991 * 180.02562 * 7 6 5 10 10 N 1.46498 * 109.46831 * 174.99559 * 9 7 6 11 11 C 1.34779 * 119.99747 * 179.97438 * 10 9 7 12 12 O 1.21586 * 119.99818 * 0.02562 * 11 10 9 13 13 C 1.47564 * 120.00010 * 180.02562 * 11 10 9 14 14 C 1.39430 * 120.12061 * 0.02562 * 13 11 10 15 15 C 1.39217 * 119.75525 * 179.97438 * 14 13 11 16 16 C 1.47816 * 119.99558 * 180.02562 * 15 14 13 17 17 C 1.35933 * 125.92708 * 180.02562 * 16 15 14 18 18 C 1.40968 * 106.74341 * 179.75110 * 17 16 15 19 19 C 1.34706 * 107.02719 * 0.34706 * 18 17 16 20 20 C 1.50699 * 125.66608 * 179.90986 * 19 18 17 21 21 O 1.42898 * 109.46964 * 299.71871 * 20 19 18 22 22 Si 1.86301 * 109.47146 * 179.71789 * 20 19 18 23 23 O 1.34345 * 108.67056 * 359.65041 * 19 18 17 24 24 C 1.39802 * 119.99965 * 0.28363 * 15 14 13 25 25 C 1.37814 * 120.24636 * 359.43669 * 24 15 14 26 26 C 1.38773 * 120.23932 * 0.56070 * 25 24 15 27 27 O 1.35655 * 120.00187 * 179.74118 * 26 25 24 28 28 C 1.52999 * 109.47468 * 59.99719 * 7 6 5 29 29 C 1.52996 * 109.47340 * 112.74188 * 3 2 1 30 30 H 1.08998 * 109.46990 * 60.00161 * 5 3 2 31 31 H 1.09002 * 109.47366 * 299.99746 * 5 3 2 32 32 H 1.09000 * 109.47334 * 179.97438 * 6 5 3 33 33 H 1.09008 * 109.47043 * 59.99605 * 6 5 3 34 34 H 1.09003 * 109.46836 * 54.99607 * 9 7 6 35 35 H 1.08998 * 109.46980 * 294.99667 * 9 7 6 36 36 H 0.96999 * 120.00185 * 359.97438 * 10 9 7 37 37 H 1.07999 * 120.12285 * 359.95935 * 14 13 11 38 38 H 1.07998 * 126.62853 * 359.97438 * 17 16 15 39 39 H 1.07998 * 126.48628 * 180.23928 * 18 17 16 40 40 H 1.09002 * 109.46959 * 59.71842 * 20 19 18 41 41 H 0.96698 * 113.99898 * 299.99550 * 21 20 19 42 42 H 1.48504 * 110.00019 * 58.68329 * 22 20 19 43 43 H 1.48503 * 110.00152 * 180.02562 * 22 20 19 44 44 H 1.07998 * 119.87615 * 179.72690 * 24 15 14 45 45 H 1.07997 * 119.87963 * 180.28814 * 25 24 15 46 46 H 0.96696 * 113.99886 * 269.98690 * 27 26 25 47 47 H 1.08998 * 109.46990 * 59.99952 * 28 7 6 48 48 H 1.08996 * 109.46768 * 180.02562 * 28 7 6 49 49 H 1.09008 * 109.47101 * 299.99869 * 29 3 2 50 50 H 1.09000 * 109.47271 * 59.99444 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 1 2.9710 0.6230 0.8179 5 6 3.1186 -1.4300 0.1823 6 6 4.6487 -1.4294 0.1816 7 6 5.1578 -0.8717 -1.1490 8 1 4.7944 -1.4942 -1.9666 9 6 6.6879 -0.8717 -1.1499 10 7 7.1754 -0.4508 -2.4657 11 6 8.5003 -0.3752 -2.7009 12 8 9.2909 -0.6568 -1.8212 13 6 8.9914 0.0492 -4.0261 14 6 8.0870 0.3732 -5.0366 15 6 8.5587 0.7733 -6.2839 16 6 7.6046 1.1186 -7.3588 17 6 7.9305 1.5212 -8.6156 18 6 6.7173 1.7355 -9.3008 19 6 5.7219 1.4635 -8.4349 20 6 4.2477 1.5583 -8.7330 21 8 3.9211 2.9004 -9.0989 22 14 3.2757 1.0731 -7.2195 23 8 6.2616 1.0881 -7.2633 24 6 9.9346 0.8433 -6.5213 25 6 10.8286 0.5286 -5.5208 26 6 10.3696 0.1287 -4.2738 27 8 11.2538 -0.1850 -3.2940 28 6 4.6472 0.5590 -1.3313 29 6 3.1177 0.5585 -1.3303 30 1 2.7556 -2.0523 -0.6357 31 1 2.7555 -1.8275 1.1301 32 1 5.0125 -2.4486 0.3119 33 1 5.0121 -0.8069 0.9993 34 1 7.0513 -1.8759 -0.9319 35 1 7.0516 -0.1806 -0.3895 36 1 6.5446 -0.2265 -3.1677 37 1 7.0245 0.3138 -4.8525 38 1 8.9264 1.6485 -9.0134 39 1 6.6069 2.0586 -10.3254 40 1 3.9993 0.8869 -9.5550 41 1 4.1161 3.5536 -8.4130 42 1 3.6290 1.9610 -6.0828 43 1 1.8202 1.1618 -7.5006 44 1 10.2983 1.1496 -7.4910 45 1 11.8903 0.5892 -5.7093 46 1 11.5104 -1.1172 -3.2795 47 1 5.0106 1.1814 -0.5136 48 1 5.0096 0.9560 -2.2795 49 1 2.7547 -0.0639 -2.1483 50 1 2.7539 1.5777 -1.4602 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16496578_13259648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:27:39 Heat of formation + Delta-G solvation = -47.978913 kcal Electronic energy + Delta-G solvation = -34719.495909 eV Core-core repulsion = 30065.764340 eV Total energy + Delta-G solvation = -4653.731569 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.161 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.75933 -41.58723 -40.53524 -39.48234 -38.27881 -37.86735 -37.40927 -35.73638 -34.28607 -33.28707 -32.75954 -32.15153 -31.88876 -30.11306 -27.62344 -26.47035 -25.20252 -24.02779 -23.73437 -23.22299 -22.71011 -21.74097 -21.38340 -20.97543 -19.72078 -19.20101 -18.83909 -18.39970 -17.68483 -17.55289 -17.23811 -16.79116 -16.64724 -16.39964 -16.19345 -15.96281 -15.89083 -15.54932 -15.44265 -15.15511 -14.91264 -14.74087 -14.54506 -14.37461 -14.27392 -14.10120 -14.02701 -13.84584 -13.67803 -13.47474 -13.40519 -13.31661 -13.18293 -13.16198 -12.94161 -12.84042 -12.36387 -12.22001 -12.13923 -11.87418 -11.81969 -11.57220 -11.32303 -11.12263 -10.89526 -10.79517 -10.49795 -10.36152 -10.07527 -8.95993 -5.10206 -0.60597 -0.26771 0.71281 1.03898 1.38799 1.44521 1.61334 1.76771 1.79953 1.84253 1.91815 2.03775 2.59938 2.80173 3.04927 3.07819 3.21503 3.41076 3.43292 3.46768 3.49693 3.57858 3.81647 3.83871 3.92039 3.92878 3.98996 4.07327 4.11367 4.13294 4.22514 4.25048 4.25482 4.33005 4.51056 4.53522 4.55000 4.57447 4.63858 4.71655 4.76482 4.78165 4.82609 4.88968 4.92138 4.95078 4.95544 5.05490 5.07551 5.10701 5.21202 5.34998 5.36574 5.40034 5.90812 6.17283 6.39503 6.57804 6.63577 7.18179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.206 3.794 3 C 0.008 3.992 4 H 0.115 0.885 5 C -0.111 4.111 6 C -0.110 4.110 7 C -0.104 4.104 8 H 0.083 0.917 9 C 0.124 3.876 10 N -0.729 5.729 11 C 0.559 3.441 12 O -0.516 6.516 13 C -0.164 4.164 14 C -0.054 4.054 15 C -0.034 4.034 16 C 0.035 3.965 17 C -0.188 4.188 18 C -0.169 4.169 19 C -0.050 4.050 20 C -0.035 4.035 21 O -0.520 6.520 22 Si 0.696 3.304 23 O -0.165 6.165 24 C -0.053 4.053 25 C -0.148 4.148 26 C 0.180 3.820 27 O -0.475 6.475 28 C -0.116 4.116 29 C -0.113 4.113 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.399 0.601 37 H 0.135 0.865 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.137 0.863 41 H 0.380 0.620 42 H -0.253 1.253 43 H -0.249 1.249 44 H 0.140 0.860 45 H 0.146 0.854 46 H 0.400 0.600 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 -2.443 -2.641 4.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.113 4.113 3 C -0.014 4.014 4 H 0.133 0.867 5 C -0.150 4.150 6 C -0.148 4.148 7 C -0.123 4.123 8 H 0.102 0.898 9 C 0.001 3.999 10 N -0.382 5.382 11 C 0.346 3.654 12 O -0.392 6.392 13 C -0.168 4.168 14 C -0.073 4.073 15 C -0.034 4.034 16 C -0.014 4.014 17 C -0.207 4.207 18 C -0.189 4.189 19 C -0.100 4.100 20 C -0.144 4.144 21 O -0.326 6.326 22 Si 0.595 3.405 23 O -0.063 6.063 24 C -0.071 4.071 25 C -0.167 4.167 26 C 0.133 3.867 27 O -0.287 6.287 28 C -0.153 4.153 29 C -0.152 4.152 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.234 0.766 37 H 0.153 0.847 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.154 0.846 41 H 0.229 0.771 42 H -0.177 1.177 43 H -0.173 1.173 44 H 0.158 0.842 45 H 0.163 0.837 46 H 0.259 0.741 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.968 -2.186 -1.504 2.824 hybrid contribution 0.547 0.959 -0.861 1.400 sum 1.514 -1.227 -2.366 3.065 Atomic orbital electron populations 1.81284 1.13018 1.08173 1.08255 1.29232 0.95138 0.93460 0.93446 1.18968 0.81212 0.99998 1.01220 0.86678 1.21560 0.95972 0.93867 1.03562 1.21491 0.94297 1.02277 0.96719 1.21500 0.93789 0.97439 0.99542 0.89834 1.21444 0.93090 1.01049 0.84340 1.45936 1.06803 1.70008 1.15461 1.17955 0.82349 0.77942 0.87127 1.90845 1.54960 1.48001 1.45407 1.20293 0.93807 1.07697 0.94953 1.21288 0.99459 0.95305 0.91236 1.17570 0.91045 1.03669 0.91136 1.20271 0.80238 1.05703 0.95230 1.21865 1.00056 1.05702 0.93102 1.21570 0.91101 1.04912 1.01286 1.22837 0.96863 1.06191 0.84059 1.24326 0.89951 0.87919 1.12214 1.86672 1.85725 1.15430 1.44809 0.94627 0.79360 0.91140 0.75354 1.83912 1.19415 1.68081 1.34871 1.21128 0.90612 0.95724 0.99674 1.21401 1.01219 1.02479 0.91585 1.18602 0.87015 0.94018 0.87088 1.84752 1.60834 1.32157 1.50968 1.21621 0.94308 0.96378 1.03021 1.21570 0.96085 1.02038 0.95479 0.90717 0.90503 0.90505 0.90745 0.90931 0.90939 0.76556 0.84707 0.82805 0.82811 0.84565 0.77115 1.17725 1.17274 0.84247 0.83653 0.74124 0.90744 0.91241 0.90719 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -1.82 18.54 42.15 0.78 -1.04 16 2 C 0.21 0.08 14.65 -20.76 -0.30 -0.23 16 3 C 0.01 -0.03 2.57 -93.41 -0.24 -0.27 16 4 H 0.12 -0.59 8.14 -51.93 -0.42 -1.02 16 5 C -0.11 0.49 5.16 -26.73 -0.14 0.36 16 6 C -0.11 0.55 5.20 -26.73 -0.14 0.42 16 7 C -0.10 0.51 2.22 -90.62 -0.20 0.31 16 8 H 0.08 -0.44 8.14 -51.93 -0.42 -0.87 16 9 C 0.12 -0.33 5.07 -4.04 -0.02 -0.35 16 10 N -0.73 1.38 5.23 -61.34 -0.32 1.06 16 11 C 0.56 0.76 7.76 -12.46 -0.10 0.66 16 12 O -0.52 -2.54 15.14 -16.66 -0.25 -2.79 16 13 C -0.16 -0.05 5.88 -104.90 -0.62 -0.67 16 14 C -0.05 0.06 9.20 -38.77 -0.36 -0.29 16 15 C -0.03 0.03 5.87 -105.03 -0.62 -0.59 16 16 C 0.04 -0.01 7.03 -36.49 -0.26 -0.26 16 17 C -0.19 0.11 10.26 -39.37 -0.40 -0.30 16 18 C -0.17 0.03 10.77 -39.80 -0.43 -0.40 16 19 C -0.05 0.02 6.22 -35.56 -0.22 -0.20 16 20 C -0.03 0.05 2.98 36.01 0.11 0.16 16 21 O -0.52 0.12 12.87 -35.23 -0.45 -0.33 16 22 Si 0.70 -1.46 32.10 -169.99 -5.46 -6.92 16 23 O -0.17 0.03 8.78 4.57 0.04 0.07 16 24 C -0.05 0.10 9.54 -39.15 -0.37 -0.28 16 25 C -0.15 0.20 9.96 -39.54 -0.39 -0.19 16 26 C 0.18 0.09 6.72 -38.63 -0.26 -0.17 16 27 O -0.48 -0.63 11.55 -40.62 -0.47 -1.10 16 28 C -0.12 0.56 5.08 -26.76 -0.14 0.43 16 29 C -0.11 0.49 5.15 -26.76 -0.14 0.35 16 30 H 0.07 -0.31 8.14 -51.93 -0.42 -0.74 16 31 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 32 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 33 H 0.07 -0.38 8.14 -51.92 -0.42 -0.81 16 34 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 35 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 36 H 0.40 -1.63 5.68 -40.82 -0.23 -1.86 16 37 H 0.14 -0.44 6.24 -52.49 -0.33 -0.76 16 38 H 0.15 -0.40 7.24 -52.49 -0.38 -0.78 16 39 H 0.15 -0.16 8.06 -52.49 -0.42 -0.59 16 40 H 0.14 -0.38 7.96 -51.93 -0.41 -0.80 16 41 H 0.38 -1.12 8.70 45.56 0.40 -0.72 16 42 H -0.25 0.02 7.11 56.52 0.40 0.42 16 43 H -0.25 -0.21 7.11 56.52 0.40 0.19 16 44 H 0.14 -0.55 6.96 -52.49 -0.37 -0.91 16 45 H 0.15 -0.45 8.06 -52.49 -0.42 -0.87 16 46 H 0.40 -0.98 9.06 45.56 0.41 -0.57 16 47 H 0.07 -0.35 8.14 -51.93 -0.42 -0.77 16 48 H 0.07 -0.34 7.18 -51.93 -0.37 -0.71 16 49 H 0.07 -0.32 8.14 -51.92 -0.42 -0.74 16 50 H 0.07 -0.29 8.14 -51.93 -0.42 -0.71 16 LS Contribution 420.42 15.07 6.34 6.34 Total: 0.00 -11.46 420.42 -11.00 -22.47 By element: Atomic # 1 Polarization: -10.28 SS G_CDS: -5.98 Total: -16.25 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -5.23 Total: -1.51 kcal Atomic # 7 Polarization: -0.44 SS G_CDS: 0.46 Total: 0.02 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: -1.13 Total: -4.15 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: -5.46 Total: -6.92 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -11.46 -11.00 -22.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16496578_13259648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.514 kcal (2) G-P(sol) polarization free energy of solvation -11.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds