Wall clock time and date at job start Sun Mar 7 2021 06:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 H 1.09002 * 109.46906 * 206.18398 * 3 2 1 5 5 C 1.52993 * 109.47384 * 326.18681 * 3 2 1 6 6 C 1.53002 * 109.47372 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.46948 * 300.00353 * 6 5 3 8 8 H 1.09002 * 109.46894 * 299.99379 * 7 6 5 9 9 C 1.53002 * 109.46948 * 179.97438 * 7 6 5 10 10 N 1.46496 * 109.47037 * 175.00006 * 9 7 6 11 11 C 1.34777 * 119.99875 * 180.02562 * 10 9 7 12 12 O 1.21597 * 119.99996 * 0.26804 * 11 10 9 13 13 C 1.47566 * 120.00050 * 179.97438 * 11 10 9 14 14 C 1.39831 * 120.00116 * 359.72316 * 13 11 10 15 15 C 1.36563 * 119.99799 * 179.78706 * 14 13 11 16 16 C 1.39826 * 120.00063 * 0.48856 * 15 14 13 17 17 C 1.47557 * 119.99807 * 179.71976 * 16 15 14 18 18 C 1.34981 * 125.27375 * 0.02562 * 17 16 15 19 19 C 1.37801 * 114.69852 * 179.97438 * 18 17 16 20 20 C 1.33746 * 115.08103 * 0.02562 * 19 18 17 21 21 C 1.50699 * 125.11718 * 180.02562 * 20 19 18 22 22 O 1.42901 * 109.47209 * 299.99793 * 21 20 19 23 23 Si 1.86303 * 109.46822 * 180.02562 * 21 20 19 24 24 S 1.75852 * 109.76017 * 359.75224 * 20 19 18 25 25 C 1.39825 * 119.99986 * 359.73852 * 16 15 14 26 26 C 1.36555 * 120.00129 * 0.02892 * 25 16 15 27 27 C 1.52993 * 109.47372 * 59.99647 * 7 6 5 28 28 C 1.52999 * 109.47522 * 299.99757 * 27 7 6 29 29 H 1.09002 * 109.47330 * 59.99977 * 5 3 2 30 30 H 1.09000 * 109.47130 * 299.99963 * 5 3 2 31 31 H 1.08996 * 109.47073 * 180.02562 * 6 5 3 32 32 H 1.09006 * 109.46551 * 60.00210 * 6 5 3 33 33 H 1.08996 * 109.47407 * 54.99341 * 9 7 6 34 34 H 1.09000 * 109.46986 * 294.99570 * 9 7 6 35 35 H 0.97004 * 120.00597 * 359.97438 * 10 9 7 36 36 H 1.08000 * 119.99825 * 359.97438 * 14 13 11 37 37 H 1.08001 * 119.99658 * 180.20199 * 15 14 13 38 38 H 1.07999 * 122.65516 * 359.96242 * 18 17 16 39 39 H 1.08001 * 122.45911 * 179.97438 * 19 18 17 40 40 H 1.08998 * 109.47508 * 59.99792 * 21 20 19 41 41 H 0.96711 * 113.99761 * 300.00149 * 22 21 20 42 42 H 1.48499 * 109.99676 * 180.02562 * 23 21 20 43 43 H 1.48499 * 109.99602 * 301.31390 * 23 21 20 44 44 H 1.07997 * 119.99536 * 179.97438 * 25 16 15 45 45 H 1.08009 * 119.99638 * 180.02562 * 26 25 16 46 46 H 1.09002 * 109.47330 * 59.99999 * 27 7 6 47 47 H 1.09000 * 109.47130 * 180.02562 * 27 7 6 48 48 H 1.09002 * 109.47016 * 300.00434 * 28 27 7 49 49 H 1.08996 * 109.47223 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 1 2.9710 0.9231 0.4535 5 6 3.1187 -1.1975 0.8027 6 6 4.6487 -1.1972 0.8021 7 6 5.1581 -1.2932 -0.6373 8 1 4.7949 -2.2155 -1.0905 9 6 6.6881 -1.2922 -0.6379 10 7 7.1761 -1.5038 -2.0029 11 6 8.5011 -1.5413 -2.2467 12 8 9.2915 -1.4043 -1.3328 13 6 8.9926 -1.7550 -3.6215 14 6 8.0837 -1.9245 -4.6706 15 6 8.5386 -2.1179 -5.9436 16 6 9.9133 -2.1568 -6.1964 17 6 10.4047 -2.3720 -7.5710 18 6 9.6253 -2.5426 -8.6597 19 6 10.3149 -2.7265 -9.8385 20 6 11.6474 -2.7086 -9.7245 21 6 12.6174 -2.8858 -10.8641 22 8 12.4088 -4.1615 -11.4733 23 14 14.3614 -2.7854 -10.2164 24 16 12.0969 -2.4392 -8.0459 25 6 10.8221 -1.9921 -5.1467 26 6 10.3673 -1.7939 -3.8745 27 6 4.6475 -0.0950 -1.4400 28 6 3.1176 -0.0953 -1.4395 29 1 2.7558 -2.1199 0.3492 30 1 2.7553 -1.1294 1.8281 31 1 5.0124 -2.0511 1.3736 32 1 5.0119 -0.2748 1.2555 33 1 7.0523 -2.0924 0.0064 34 1 7.0510 -0.3336 -0.2669 35 1 6.5456 -1.6177 -2.7312 36 1 7.0219 -1.8993 -4.4745 37 1 7.8366 -2.2455 -6.7543 38 1 8.5464 -2.5357 -8.6109 39 1 9.8161 -2.8752 -10.7848 40 1 12.4580 -2.1001 -11.6026 41 1 12.5341 -4.9093 -10.8729 42 1 15.3277 -2.9581 -11.3307 43 1 14.5817 -1.4758 -9.5520 44 1 11.8838 -2.0225 -5.3420 45 1 11.0694 -1.6662 -3.0637 46 1 5.0108 0.8274 -0.9868 47 1 5.0102 -0.1636 -2.4656 48 1 2.7543 -1.0177 -1.8928 49 1 2.7539 0.7586 -2.0110 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16496578_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:28:09 Heat of formation + Delta-G solvation = 6.792532 kcal Electronic energy + Delta-G solvation = -30337.954481 eV Core-core repulsion = 26129.350851 eV Total energy + Delta-G solvation = -4208.603630 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.134 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.38859 -40.25694 -39.67802 -38.95655 -37.50661 -37.33623 -35.81313 -33.67068 -32.64017 -32.03450 -31.66685 -30.43890 -27.85063 -26.66233 -24.65778 -23.95152 -23.61572 -23.44771 -22.75565 -21.57163 -20.77537 -20.22594 -19.20471 -18.67486 -18.54050 -17.64459 -17.10239 -16.59661 -16.55462 -16.20725 -16.13002 -15.96719 -15.84021 -15.49900 -15.26017 -15.01592 -14.93897 -14.71340 -14.52527 -14.44736 -14.33603 -14.13769 -14.06235 -13.87276 -13.59366 -13.48514 -13.20287 -13.12179 -13.07650 -13.01084 -12.65924 -12.57452 -12.27088 -12.04372 -11.98083 -11.93778 -11.55915 -11.52607 -11.27393 -11.05008 -10.93989 -10.79026 -10.52129 -10.15059 -10.08235 -9.53768 -9.00075 -5.15445 -0.85733 0.28552 0.37880 0.40056 0.77815 1.22940 1.54262 1.61467 1.76793 1.79564 1.85737 2.00983 2.15785 2.87629 2.94662 3.41907 3.47371 3.70526 3.73474 3.76852 3.78884 3.82271 3.84016 3.88849 4.14018 4.23614 4.29466 4.35632 4.38143 4.41152 4.48469 4.49771 4.56947 4.59136 4.62831 4.65386 4.78405 4.84656 4.95566 4.97769 5.03880 5.05759 5.13505 5.21236 5.21798 5.26756 5.30020 5.31925 5.32613 5.35768 5.41609 5.47019 5.50608 5.62821 5.77383 6.51859 6.59453 6.66949 7.19370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.236 3.764 3 C 0.009 3.991 4 H 0.136 0.864 5 C -0.107 4.107 6 C -0.107 4.107 7 C -0.093 4.093 8 H 0.091 0.909 9 C 0.122 3.878 10 N -0.709 5.709 11 C 0.555 3.445 12 O -0.583 6.583 13 C -0.149 4.149 14 C -0.067 4.067 15 C -0.109 4.109 16 C 0.004 3.996 17 C -0.158 4.158 18 C -0.117 4.117 19 C -0.110 4.110 20 C -0.222 4.222 21 C -0.025 4.025 22 O -0.547 6.547 23 Si 0.717 3.283 24 S 0.121 5.879 25 C -0.129 4.129 26 C -0.065 4.065 27 C -0.111 4.111 28 C -0.108 4.108 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.415 0.585 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.153 0.847 40 H 0.122 0.878 41 H 0.397 0.603 42 H -0.269 1.269 43 H -0.268 1.268 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 -2.013 -1.653 2.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.081 4.081 3 C -0.012 4.012 4 H 0.153 0.847 5 C -0.146 4.146 6 C -0.145 4.145 7 C -0.112 4.112 8 H 0.110 0.890 9 C -0.001 4.001 10 N -0.361 5.361 11 C 0.343 3.657 12 O -0.464 6.464 13 C -0.153 4.153 14 C -0.086 4.086 15 C -0.129 4.129 16 C 0.002 3.998 17 C -0.275 4.275 18 C -0.148 4.148 19 C -0.140 4.140 20 C -0.340 4.340 21 C -0.138 4.138 22 O -0.355 6.355 23 Si 0.620 3.380 24 S 0.388 5.612 25 C -0.148 4.148 26 C -0.084 4.084 27 C -0.149 4.149 28 C -0.146 4.146 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.253 0.747 36 H 0.182 0.818 37 H 0.177 0.823 38 H 0.184 0.816 39 H 0.171 0.829 40 H 0.139 0.861 41 H 0.247 0.753 42 H -0.195 1.195 43 H -0.194 1.194 44 H 0.150 0.850 45 H 0.146 0.854 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.182 -0.998 -0.787 1.735 hybrid contribution -1.449 0.203 -1.129 1.848 sum -0.267 -0.795 -1.916 2.092 Atomic orbital electron populations 1.81311 1.15373 1.10929 1.10672 1.29987 0.95751 0.91139 0.91208 1.19283 0.78443 1.03446 1.00071 0.84675 1.21525 0.96232 0.96535 1.00286 1.21467 0.93693 1.03907 0.95462 1.21416 0.91756 1.00467 0.97517 0.89027 1.21489 0.94638 1.01621 0.82355 1.45818 1.06017 1.72612 1.11674 1.18444 0.82925 0.76008 0.88310 1.90791 1.56674 1.51840 1.47139 1.20059 0.94714 1.07292 0.93219 1.21264 1.00520 0.95528 0.91253 1.21200 0.93900 0.99698 0.98055 1.18461 0.94234 0.97569 0.89513 1.23178 0.96524 1.11230 0.96561 1.20633 1.02342 1.01434 0.90357 1.20186 0.92571 1.01049 1.00200 1.25155 0.99117 1.11892 0.97829 1.24399 1.05896 0.89175 0.94345 1.86493 1.93596 1.14737 1.40674 0.94188 0.74518 0.85602 0.83670 1.84196 1.05915 1.70267 1.00775 1.21024 1.00041 1.01612 0.92092 1.20948 0.95059 0.95413 0.97013 1.21610 0.93655 0.98429 1.01167 1.21549 0.96349 1.03767 0.92964 0.90924 0.90684 0.90581 0.90214 0.92180 0.91789 0.74664 0.81816 0.82267 0.81571 0.82929 0.86062 0.75326 1.19461 1.19378 0.84978 0.85377 0.90579 0.90172 0.90661 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -4.57 18.54 20.01 0.37 -4.20 16 2 C 0.24 0.06 14.65 89.44 1.31 1.37 16 3 C 0.01 -0.08 2.57 -12.60 -0.03 -0.12 16 4 H 0.14 -1.72 8.14 -2.39 -0.02 -1.74 16 5 C -0.11 1.09 5.16 30.59 0.16 1.25 16 6 C -0.11 1.23 5.20 30.59 0.16 1.39 16 7 C -0.09 1.09 2.23 -10.80 -0.02 1.07 16 8 H 0.09 -1.18 8.14 -2.39 -0.02 -1.20 16 9 C 0.12 -0.74 5.06 86.38 0.44 -0.30 16 10 N -0.71 3.81 5.23 -466.24 -2.44 1.37 16 11 C 0.55 1.57 7.76 86.70 0.67 2.24 16 12 O -0.58 -7.06 16.33 -4.02 -0.07 -7.13 16 13 C -0.15 -0.04 5.88 -20.05 -0.12 -0.16 16 14 C -0.07 0.41 9.48 22.26 0.21 0.62 16 15 C -0.11 0.58 9.48 22.26 0.21 0.79 16 16 C 0.00 0.00 5.88 -20.05 -0.12 -0.12 16 17 C -0.16 0.14 6.37 23.98 0.15 0.29 16 18 C -0.12 0.36 9.64 21.42 0.21 0.56 16 19 C -0.11 0.21 10.00 21.15 0.21 0.42 16 20 C -0.22 0.27 5.73 24.66 0.14 0.41 16 21 C -0.02 0.04 2.96 71.24 0.21 0.25 16 22 O -0.55 0.81 12.86 -148.98 -1.92 -1.11 16 23 Si 0.72 -1.25 30.96 68.60 2.12 0.88 16 24 S 0.12 -0.10 19.46 -56.49 -1.10 -1.20 16 25 C -0.13 -0.10 9.54 22.26 0.21 0.11 16 26 C -0.07 -0.17 9.53 22.26 0.21 0.04 16 27 C -0.11 1.44 5.07 30.59 0.16 1.59 16 28 C -0.11 1.23 5.16 30.60 0.16 1.38 16 29 H 0.07 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H 0.07 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 32 H 0.08 -0.95 8.14 -2.38 -0.02 -0.97 16 33 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.41 -4.95 5.67 -92.71 -0.53 -5.47 16 36 H 0.16 -2.27 6.38 -2.91 -0.02 -2.29 16 37 H 0.16 -1.71 6.74 -2.91 -0.02 -1.73 16 38 H 0.17 -1.36 6.88 -2.91 -0.02 -1.38 16 39 H 0.15 -0.55 8.06 -2.91 -0.02 -0.57 16 40 H 0.12 -0.18 7.96 -2.39 -0.02 -0.20 16 41 H 0.40 -3.58 8.70 -74.05 -0.64 -4.22 16 42 H -0.27 -1.14 7.11 99.48 0.71 -0.43 16 43 H -0.27 -0.85 7.11 99.48 0.71 -0.14 16 44 H 0.13 -0.10 7.26 -2.91 -0.02 -0.12 16 45 H 0.13 0.56 7.64 -2.91 -0.02 0.54 16 46 H 0.08 -0.95 8.14 -2.39 -0.02 -0.97 16 47 H 0.08 -1.15 7.18 -2.39 -0.02 -1.17 16 48 H 0.07 -0.83 8.14 -2.39 -0.02 -0.85 16 49 H 0.08 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: 0.00 -26.10 416.96 1.37 -24.73 By element: Atomic # 1 Polarization: -26.32 SS G_CDS: -0.13 Total: -26.46 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 4.53 Total: 13.10 kcal Atomic # 7 Polarization: -0.75 SS G_CDS: -2.07 Total: -2.82 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -1.98 Total: -8.23 kcal Atomic # 14 Polarization: -1.25 SS G_CDS: 2.12 Total: 0.88 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.10 Total: -1.20 kcal Total: -26.10 1.37 -24.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16496578_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.521 kcal (2) G-P(sol) polarization free energy of solvation -26.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds