Wall clock time and date at job start Sun Mar 7 2021 06:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09007 * 109.47188 * 195.42082 * 3 2 1 5 5 C 1.53005 * 109.47236 * 315.41737 * 3 2 1 6 6 C 1.53007 * 109.47211 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46775 * 300.00268 * 6 5 3 8 8 H 1.09002 * 109.47070 * 299.99366 * 7 6 5 9 9 C 1.52999 * 109.46896 * 180.02562 * 7 6 5 10 10 N 1.46499 * 109.47230 * 64.99575 * 9 7 6 11 11 C 1.34777 * 119.99866 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00371 * 0.02562 * 11 10 9 13 13 C 1.50702 * 119.99961 * 180.02562 * 11 10 9 14 14 C 1.53535 * 109.82239 * 80.00031 * 13 11 10 15 15 C 1.53046 * 108.56264 * 180.49132 * 14 13 11 16 16 C 1.50209 * 110.31260 * 310.42458 * 15 14 13 17 17 C 1.50696 * 118.54553 * 200.02719 * 16 15 14 18 18 O 1.42906 * 109.47449 * 300.00578 * 17 16 15 19 19 Si 1.86299 * 109.47345 * 180.02562 * 17 16 15 20 20 C 1.31110 * 122.90570 * 20.06145 * 16 15 14 21 21 N 1.38923 * 121.85297 * 359.58286 * 20 16 15 22 22 C 1.52995 * 109.47486 * 59.99883 * 7 6 5 23 23 C 1.52993 * 109.47418 * 75.41971 * 3 2 1 24 24 H 1.09000 * 109.46901 * 300.00199 * 5 3 2 25 25 H 1.08998 * 109.46914 * 60.00341 * 5 3 2 26 26 H 1.08995 * 109.46692 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.46804 * 59.99797 * 6 5 3 28 28 H 1.09001 * 109.47158 * 304.99852 * 9 7 6 29 29 H 1.09002 * 109.47394 * 184.99788 * 9 7 6 30 30 H 0.97002 * 120.00377 * 0.02562 * 10 9 7 31 31 H 1.09006 * 109.86143 * 319.10549 * 13 11 10 32 32 H 1.08994 * 109.62392 * 60.76725 * 14 13 11 33 33 H 1.09005 * 109.77671 * 300.30005 * 14 13 11 34 34 H 1.08991 * 109.32875 * 70.68859 * 15 14 13 35 35 H 1.09000 * 109.32832 * 190.17247 * 15 14 13 36 36 H 1.09007 * 109.46829 * 60.00225 * 17 16 15 37 37 H 0.96691 * 114.00163 * 300.00160 * 18 17 16 38 38 H 1.48494 * 110.00268 * 180.02562 * 19 17 16 39 39 H 1.48501 * 109.99959 * 301.32213 * 19 17 16 40 40 H 1.08001 * 119.07385 * 179.59407 * 20 16 15 41 41 H 0.96994 * 120.56319 * 193.30065 * 21 20 16 42 42 H 1.08994 * 109.47004 * 60.00183 * 22 7 6 43 43 H 1.09003 * 109.47420 * 179.97438 * 22 7 6 44 44 H 1.08995 * 109.47402 * 59.99595 * 23 3 2 45 45 H 1.08998 * 109.47165 * 299.99923 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9709 0.9915 0.2733 5 6 3.1185 -1.0265 1.0126 6 6 4.6486 -1.0254 1.0130 7 6 5.1592 -1.3879 -0.3829 8 1 4.7967 -2.3789 -0.6564 9 6 6.6892 -1.3874 -0.3823 10 7 7.1775 -2.4520 0.4976 11 6 8.5026 -2.6417 0.6546 12 8 9.2907 -1.9308 0.0677 13 6 9.0050 -3.7372 1.5594 14 6 8.9424 -5.0859 0.8284 15 6 9.4464 -6.1773 1.7755 16 6 10.7575 -5.7726 2.3867 17 6 11.6419 -6.8448 2.9693 18 8 10.9442 -7.5200 4.0179 19 14 13.1905 -6.0681 3.6542 20 6 11.1663 -4.5279 2.4362 21 7 10.4099 -3.4865 1.9133 22 6 4.6487 -0.3608 -1.3954 23 6 3.1182 -0.3622 -1.3960 24 1 2.7550 -0.7680 2.0071 25 1 2.7557 -2.0174 0.7393 26 1 5.0121 -1.7568 1.7347 27 1 5.0110 -0.0344 1.2865 28 1 7.0520 -0.4243 -0.0234 29 1 7.0530 -1.5581 -1.3956 30 1 6.5473 -3.0209 0.9668 31 1 8.3977 -3.7783 2.4637 32 1 9.5742 -5.0510 -0.0591 33 1 7.9140 -5.3002 0.5373 34 1 8.7132 -6.3355 2.5663 35 1 9.5789 -7.1050 1.2189 36 1 11.9073 -7.5597 2.1904 37 1 10.6764 -6.9438 4.7468 38 1 14.0714 -7.1151 4.2312 39 1 13.9090 -5.3356 2.5806 40 1 12.1178 -4.3058 2.8963 41 1 10.8019 -2.6087 1.7841 42 1 5.0112 0.6300 -1.1220 43 1 5.0128 -0.6188 -2.3899 44 1 2.7546 0.3695 -2.1173 45 1 2.7554 -1.3530 -1.6692 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16496578_15413834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:29:01 Heat of formation + Delta-G solvation = -39.554276 kcal Electronic energy + Delta-G solvation = -24880.021395 eV Core-core repulsion = 21284.186702 eV Total energy + Delta-G solvation = -3595.834693 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.38351 -40.17168 -39.35582 -37.55344 -37.25845 -35.77408 -33.31482 -33.12957 -32.22700 -31.66165 -28.19546 -26.56960 -25.24952 -23.79365 -23.60351 -22.86114 -21.61081 -20.76907 -19.29148 -19.06097 -18.66676 -17.91820 -17.18726 -16.69002 -16.53298 -16.03738 -15.99823 -15.76540 -15.26237 -15.17180 -15.08332 -14.93290 -14.69873 -14.42303 -14.25080 -14.18299 -14.02631 -13.90044 -13.39755 -13.10930 -13.03672 -12.96117 -12.87136 -12.66152 -12.19496 -11.98296 -11.94072 -11.91634 -11.82524 -11.52161 -11.24578 -11.20414 -10.99027 -10.80194 -10.13461 -10.07716 -8.40898 -4.99010 1.35480 1.45329 1.53705 1.64175 1.76581 1.79366 2.00142 2.01969 2.70315 2.94727 3.61178 3.72044 3.77113 3.81401 3.82460 3.85823 3.92072 4.08732 4.14167 4.29760 4.36714 4.41167 4.49616 4.50008 4.57371 4.62760 4.66425 4.67391 4.77945 4.80124 4.85752 4.97603 5.05043 5.06187 5.21199 5.22163 5.27136 5.30439 5.32840 5.33024 5.41947 5.47073 5.61178 5.63202 6.29812 6.53303 6.59286 6.85662 6.98372 7.19069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.236 3.764 3 C 0.009 3.991 4 H 0.136 0.864 5 C -0.108 4.108 6 C -0.109 4.109 7 C -0.093 4.093 8 H 0.090 0.910 9 C 0.124 3.876 10 N -0.708 5.708 11 C 0.511 3.489 12 O -0.578 6.578 13 C 0.139 3.861 14 C -0.123 4.123 15 C -0.050 4.050 16 C -0.288 4.288 17 C -0.046 4.046 18 O -0.563 6.563 19 Si 0.759 3.241 20 C 0.141 3.859 21 N -0.738 5.738 22 C -0.107 4.107 23 C -0.107 4.107 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.418 0.582 31 H 0.119 0.881 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.392 0.608 38 H -0.308 1.308 39 H -0.295 1.295 40 H 0.142 0.858 41 H 0.407 0.593 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 1.706 3.000 3.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.081 4.081 3 C -0.012 4.012 4 H 0.154 0.846 5 C -0.147 4.147 6 C -0.147 4.147 7 C -0.112 4.112 8 H 0.108 0.892 9 C 0.000 4.000 10 N -0.361 5.361 11 C 0.297 3.703 12 O -0.457 6.457 13 C 0.030 3.970 14 C -0.162 4.162 15 C -0.087 4.087 16 C -0.299 4.299 17 C -0.157 4.157 18 O -0.370 6.370 19 Si 0.668 3.332 20 C 0.021 3.979 21 N -0.370 5.370 22 C -0.145 4.145 23 C -0.146 4.146 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.256 0.744 31 H 0.136 0.864 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.242 0.758 38 H -0.237 1.237 39 H -0.223 1.223 40 H 0.158 0.842 41 H 0.243 0.757 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.734 1.736 2.138 2.851 hybrid contribution 0.159 -0.236 -0.657 0.716 sum -0.575 1.500 1.481 2.185 Atomic orbital electron populations 1.81310 1.15412 1.10999 1.10616 1.30005 0.95781 0.91123 0.91215 1.19288 0.78403 1.04401 0.99128 0.84602 1.21556 0.96552 0.98383 0.98210 1.21598 0.93471 1.03533 0.96086 1.21405 0.91944 1.01234 0.96567 0.89198 1.21439 0.94477 0.90341 0.93697 1.45851 1.06182 1.35901 1.48168 1.20843 0.83031 0.84510 0.81963 1.90730 1.56576 1.49029 1.49415 1.21120 0.85000 0.92952 0.97890 1.21843 1.03227 0.93109 0.97997 1.19908 0.94103 0.97031 0.97684 1.20980 1.02189 0.93120 1.13601 1.24730 1.02567 0.96781 0.91637 1.86427 1.78058 1.39596 1.32946 0.94231 0.75071 0.80337 0.83519 1.20465 0.95120 0.87573 0.94776 1.44394 1.09991 1.12428 1.70216 1.21473 0.93622 0.99979 0.99473 1.21532 0.96316 1.02982 0.93793 0.90567 0.90827 0.89970 0.90498 0.91746 0.92551 0.74431 0.86376 0.93148 0.88040 0.90036 0.92087 0.89395 0.75808 1.23695 1.22266 0.84159 0.75674 0.90180 0.90768 0.90787 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -4.49 18.54 20.01 0.37 -4.11 16 2 C 0.24 -0.01 14.65 89.44 1.31 1.30 16 3 C 0.01 -0.09 2.56 -12.60 -0.03 -0.12 16 4 H 0.14 -1.82 8.14 -2.38 -0.02 -1.84 16 5 C -0.11 1.30 5.16 30.60 0.16 1.46 16 6 C -0.11 1.56 5.08 30.60 0.16 1.71 16 7 C -0.09 1.21 2.22 -10.80 -0.02 1.18 16 8 H 0.09 -1.24 8.14 -2.39 -0.02 -1.26 16 9 C 0.12 -1.01 5.07 86.38 0.44 -0.58 16 10 N -0.71 6.21 5.28 -463.06 -2.45 3.76 16 11 C 0.51 -0.99 7.10 87.66 0.62 -0.37 16 12 O -0.58 -4.39 16.06 -3.03 -0.05 -4.44 16 13 C 0.14 -0.69 3.36 44.32 0.15 -0.54 16 14 C -0.12 0.52 5.47 30.79 0.17 0.69 16 15 C -0.05 0.13 5.75 29.71 0.17 0.30 16 16 C -0.29 0.35 5.44 -16.75 -0.09 0.26 16 17 C -0.05 -0.01 2.83 71.23 0.20 0.20 16 18 O -0.56 -0.17 12.78 -148.98 -1.90 -2.07 16 19 Si 0.76 -0.75 29.68 68.60 2.04 1.29 16 20 C 0.14 -0.29 9.63 83.42 0.80 0.51 16 21 N -0.74 1.29 5.47 -329.00 -1.80 -0.51 16 22 C -0.11 1.31 5.21 30.61 0.16 1.47 16 23 C -0.11 1.14 5.16 30.61 0.16 1.29 16 24 H 0.08 -0.86 8.14 -2.39 -0.02 -0.88 16 25 H 0.07 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H 0.08 -1.30 7.18 -2.39 -0.02 -1.32 16 27 H 0.08 -1.07 8.14 -2.39 -0.02 -1.09 16 28 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 29 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.42 -6.20 7.66 -92.71 -0.71 -6.91 16 31 H 0.12 -1.19 8.14 -2.38 -0.02 -1.21 16 32 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.10 -0.91 8.14 -2.38 -0.02 -0.93 16 34 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 35 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.09 0.26 7.96 -2.38 -0.02 0.24 16 37 H 0.39 -3.23 8.70 -74.06 -0.64 -3.87 16 38 H -0.31 -2.28 7.11 99.48 0.71 -1.57 16 39 H -0.29 -1.30 7.10 99.48 0.71 -0.60 16 40 H 0.14 -0.67 4.37 -2.91 -0.01 -0.68 16 41 H 0.41 -0.25 8.08 -92.71 -0.75 -1.00 16 42 H 0.08 -1.03 8.14 -2.39 -0.02 -1.05 16 43 H 0.07 -0.83 8.14 -2.39 -0.02 -0.85 16 44 H 0.07 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H 0.07 -0.69 8.14 -2.39 -0.02 -0.71 16 Total: 0.00 -25.01 360.92 -0.50 -25.51 By element: Atomic # 1 Polarization: -27.14 SS G_CDS: -1.05 Total: -28.19 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 4.35 Total: 8.77 kcal Atomic # 7 Polarization: 3.01 SS G_CDS: -3.87 Total: -0.86 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -1.95 Total: -6.51 kcal Atomic # 14 Polarization: -0.75 SS G_CDS: 2.04 Total: 1.29 kcal Total: -25.01 -0.50 -25.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16496578_15413834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.049 kcal (2) G-P(sol) polarization free energy of solvation -25.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds