Wall clock time and date at job start Sun Mar 7 2021 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46765 * 121.61169 * 3 2 1 5 5 C 1.53000 * 109.46792 * 241.60836 * 3 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 3 8 8 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 9 9 C 1.52997 * 109.47127 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47520 * 64.99751 * 9 7 6 11 11 C 1.34772 * 120.00336 * 180.02562 * 10 9 7 12 12 O 1.21615 * 120.00086 * 359.97438 * 11 10 9 13 13 C 1.47382 * 120.00170 * 180.02562 * 11 10 9 14 14 C 1.36418 * 127.19237 * 179.97438 * 13 11 10 15 15 C 1.50693 * 125.80322 * 359.96262 * 14 13 11 16 16 O 1.42897 * 109.47376 * 89.99916 * 15 14 13 17 17 C 1.35902 * 117.00644 * 180.02562 * 16 15 14 18 18 C 1.38736 * 120.04886 * 359.71993 * 17 16 15 19 19 C 1.38149 * 119.93980 * 179.74721 * 18 17 16 20 20 C 1.38264 * 120.05633 * 0.51061 * 19 18 17 21 21 C 1.50700 * 119.94347 * 179.74825 * 20 19 18 22 22 O 1.42908 * 109.46803 * 245.02312 * 21 20 19 23 23 Si 1.86296 * 109.47373 * 5.01804 * 21 20 19 24 24 C 1.38269 * 120.11326 * 359.76631 * 20 19 18 25 25 C 1.38153 * 120.05319 * 359.97438 * 24 20 19 26 26 O 1.33654 * 108.39325 * 179.97438 * 14 13 11 27 27 C 1.34208 * 110.91187 * 359.97438 * 26 14 13 28 28 C 1.34178 * 109.12548 * 359.74969 * 27 26 14 29 29 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 30 30 C 1.52996 * 109.47282 * 1.60984 * 3 2 1 31 31 H 1.09002 * 109.47398 * 300.00415 * 5 3 2 32 32 H 1.09001 * 109.47194 * 60.00595 * 5 3 2 33 33 H 1.08998 * 109.47533 * 59.99948 * 6 5 3 34 34 H 1.08996 * 109.47853 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.47346 * 184.99897 * 9 7 6 36 36 H 1.09002 * 109.47196 * 304.99671 * 9 7 6 37 37 H 0.97009 * 119.99712 * 359.97438 * 10 9 7 38 38 H 1.08999 * 109.47586 * 209.99838 * 15 14 13 39 39 H 1.09000 * 109.47012 * 330.00151 * 15 14 13 40 40 H 1.07998 * 120.03308 * 0.02562 * 18 17 16 41 41 H 1.07999 * 119.97091 * 180.23924 * 19 18 17 42 42 H 1.08996 * 109.47126 * 125.02665 * 21 20 19 43 43 H 0.96696 * 113.99803 * 180.02562 * 22 21 20 44 44 H 1.48493 * 110.00085 * 178.68200 * 23 21 20 45 45 H 1.48501 * 109.99979 * 300.00766 * 23 21 20 46 46 H 1.07996 * 119.97420 * 179.97438 * 24 20 19 47 47 H 1.07994 * 120.02582 * 179.97438 * 25 24 20 48 48 H 1.08001 * 125.44108 * 179.97438 * 27 26 14 49 49 H 1.07994 * 127.02727 * 180.25904 * 28 27 26 50 50 H 1.09002 * 109.47045 * 180.02562 * 29 7 6 51 51 H 1.09001 * 109.47375 * 59.99966 * 29 7 6 52 52 H 1.08992 * 109.47554 * 299.99819 * 30 3 2 53 53 H 1.09004 * 109.47108 * 60.00070 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9710 0.5395 -0.8752 5 6 3.1176 0.6868 1.2690 6 6 4.6476 0.6881 1.2688 7 6 5.1588 -0.7535 1.2279 8 1 4.7961 -1.2925 2.1031 9 6 6.6888 -0.7522 1.2270 10 7 7.1775 -0.2034 2.4944 11 6 8.5025 -0.1041 2.7194 12 8 9.2927 -0.4704 1.8706 13 6 8.9941 0.4474 3.9947 14 6 10.2937 0.6133 4.3750 15 6 11.5052 0.2584 3.5522 16 8 11.8870 1.3826 2.7570 17 6 12.9697 1.2286 1.9502 18 6 13.6541 0.0221 1.9287 19 6 14.7513 -0.1337 1.1038 20 6 15.1737 0.9150 0.3079 21 6 16.3743 0.7441 -0.5868 22 8 17.4200 1.6160 -0.1524 23 14 16.9637 -1.0212 -0.5048 24 6 14.4967 2.1204 0.3317 25 6 13.3957 2.2795 1.1509 26 8 10.3097 1.1438 5.6017 27 6 9.0618 1.3393 6.0553 28 6 8.1865 0.9403 5.1200 29 6 4.6492 -1.4395 -0.0411 30 6 3.1187 -1.4410 -0.0405 31 1 2.7537 1.7139 1.2979 32 1 2.7546 0.1480 2.1442 33 1 5.0104 1.2271 0.3936 34 1 5.0108 1.1765 2.1730 35 1 7.0530 -1.7727 1.1084 36 1 7.0511 -0.1390 0.4018 37 1 6.5472 0.0891 3.1714 38 1 12.3271 -0.0141 4.2143 39 1 11.2685 -0.5833 2.9014 40 1 13.3269 -0.7962 2.5530 41 1 15.2821 -1.0740 1.0839 42 1 16.1004 0.9885 -1.6130 43 1 18.2255 1.5595 -0.6842 44 1 18.1278 -1.2105 -1.4071 45 1 17.3402 -1.3668 0.8895 46 1 14.8289 2.9381 -0.2906 47 1 12.8676 3.2212 1.1695 48 1 8.8034 1.7552 7.0180 49 1 7.1088 0.9724 5.1820 50 1 5.0130 -2.4666 -0.0700 51 1 5.0118 -0.9004 -0.9163 52 1 2.7557 -1.9798 0.8346 53 1 2.7556 -1.9298 -0.9446 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16496578_4549634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:30:45 Heat of formation + Delta-G solvation = -41.122860 kcal Electronic energy + Delta-G solvation = -35806.357031 eV Core-core repulsion = 30997.385144 eV Total energy + Delta-G solvation = -4808.971887 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.177 amu Computer time = 6.22 seconds Orbital eigenvalues (eV) -43.67790 -41.26607 -40.77212 -39.81377 -39.14486 -37.50160 -37.36127 -35.75898 -34.14352 -32.93123 -32.37072 -31.98242 -31.67091 -31.45895 -28.27013 -27.16179 -26.09634 -24.53279 -23.80151 -23.62965 -22.96267 -22.24457 -21.84781 -21.17925 -20.56726 -19.47992 -19.10350 -18.66050 -18.52719 -17.61595 -17.22771 -17.06287 -16.85649 -16.77244 -16.57357 -16.43726 -15.86457 -15.76061 -15.67717 -15.30655 -15.26257 -14.89480 -14.79424 -14.66504 -14.47769 -14.34600 -14.21176 -14.07571 -13.99563 -13.81029 -13.79094 -13.50265 -13.40735 -13.11611 -13.07953 -12.98405 -12.65748 -12.48903 -12.20987 -11.98416 -11.93887 -11.87844 -11.72572 -11.52239 -11.27368 -11.06756 -10.94826 -10.91979 -10.45974 -10.09046 -10.04102 -9.77673 -9.22775 -4.91293 0.01124 0.27053 0.30707 1.07996 1.31925 1.56172 1.60114 1.76725 1.79497 1.94649 2.12760 2.22884 2.51473 2.61365 2.94576 3.36868 3.45038 3.66808 3.71290 3.75085 3.78426 3.81097 3.82742 3.84118 3.95408 3.97683 4.13971 4.14659 4.29106 4.29600 4.40863 4.41503 4.46537 4.49473 4.49738 4.57121 4.62349 4.64789 4.68353 4.79079 4.84479 4.87157 4.95913 4.98019 5.05444 5.15514 5.20868 5.22237 5.25489 5.29777 5.31223 5.32538 5.42809 5.47617 5.49256 5.62925 5.68608 5.93095 6.26817 6.52641 6.59308 6.62104 7.19355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.236 3.764 3 C 0.009 3.991 4 H 0.136 0.864 5 C -0.107 4.107 6 C -0.111 4.111 7 C -0.092 4.092 8 H 0.090 0.910 9 C 0.124 3.876 10 N -0.705 5.705 11 C 0.581 3.419 12 O -0.572 6.572 13 C -0.221 4.221 14 C 0.037 3.963 15 C 0.134 3.866 16 O -0.321 6.321 17 C 0.125 3.875 18 C -0.205 4.205 19 C -0.080 4.080 20 C -0.123 4.123 21 C -0.080 4.080 22 O -0.559 6.559 23 Si 0.759 3.241 24 C -0.058 4.058 25 C -0.162 4.162 26 O -0.181 6.181 27 C -0.015 4.015 28 C -0.195 4.195 29 C -0.107 4.107 30 C -0.107 4.107 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.414 0.586 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.149 0.851 41 H 0.145 0.855 42 H 0.095 0.905 43 H 0.394 0.606 44 H -0.284 1.284 45 H -0.298 1.298 46 H 0.142 0.858 47 H 0.136 0.864 48 H 0.250 0.750 49 H 0.194 0.806 50 H 0.077 0.923 51 H 0.080 0.920 52 H 0.072 0.928 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -1.652 1.208 2.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.081 4.081 3 C -0.012 4.012 4 H 0.154 0.846 5 C -0.146 4.146 6 C -0.148 4.148 7 C -0.111 4.111 8 H 0.109 0.891 9 C 0.001 3.999 10 N -0.357 5.357 11 C 0.369 3.631 12 O -0.453 6.453 13 C -0.225 4.225 14 C -0.016 4.016 15 C 0.060 3.940 16 O -0.235 6.235 17 C 0.080 3.920 18 C -0.224 4.224 19 C -0.097 4.097 20 C -0.124 4.124 21 C -0.189 4.189 22 O -0.369 6.369 23 Si 0.664 3.336 24 C -0.076 4.076 25 C -0.180 4.180 26 O -0.076 6.076 27 C -0.081 4.081 28 C -0.213 4.213 29 C -0.145 4.145 30 C -0.146 4.146 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.252 0.748 38 H 0.114 0.886 39 H 0.129 0.871 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.113 0.887 43 H 0.244 0.756 44 H -0.211 1.211 45 H -0.226 1.226 46 H 0.160 0.840 47 H 0.154 0.846 48 H 0.266 0.734 49 H 0.211 0.789 50 H 0.096 0.904 51 H 0.098 0.902 52 H 0.091 0.909 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.259 -2.057 1.402 2.790 hybrid contribution 0.762 0.885 0.261 1.196 sum -0.497 -1.172 1.663 2.094 Atomic orbital electron populations 1.81304 1.15365 1.10701 1.10893 1.29976 0.95743 0.91196 0.91155 1.19280 0.78458 1.00369 1.03130 0.84650 1.21540 0.96309 1.01131 0.95618 1.21600 0.93679 0.95841 1.03715 1.21411 0.91817 0.97485 1.00399 0.89127 1.21489 0.94562 0.98854 0.84971 1.45683 1.05706 1.64056 1.20253 1.17386 0.83117 0.77547 0.85033 1.90783 1.56388 1.51161 1.46971 1.21431 0.93369 1.10129 0.97612 1.22050 0.95307 0.99444 0.84824 1.21146 0.92471 0.88499 0.91878 1.86044 1.44334 1.39124 1.54009 1.19156 0.86666 0.94889 0.91301 1.21385 0.99032 0.97499 1.04446 1.20994 0.95933 0.98742 0.94044 1.19417 0.97443 0.95041 1.00462 1.24929 0.88237 1.06309 0.99389 1.86553 1.26940 1.63032 1.60365 0.94157 0.84539 0.77040 0.77818 1.20974 0.92764 0.97143 0.96752 1.20630 0.99573 0.98863 0.98942 1.83790 1.33308 1.62480 1.28044 1.24900 0.78850 1.02347 1.01998 1.23259 1.02136 1.04215 0.91721 1.21475 0.93659 1.01824 0.97509 1.21536 0.96253 0.93101 1.03675 0.90662 0.90724 0.90641 0.90454 0.91876 0.91871 0.74826 0.88633 0.87148 0.83385 0.83795 0.88694 0.75562 1.21104 1.22557 0.84022 0.84565 0.73432 0.78903 0.90435 0.90174 0.90942 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -4.67 18.54 20.01 0.37 -4.30 16 2 C 0.24 0.12 14.65 89.44 1.31 1.43 16 3 C 0.01 -0.08 2.56 -12.60 -0.03 -0.11 16 4 H 0.14 -1.68 8.14 -2.39 -0.02 -1.70 16 5 C -0.11 1.15 5.16 30.59 0.16 1.31 16 6 C -0.11 1.33 5.08 30.60 0.16 1.49 16 7 C -0.09 1.04 2.23 -10.79 -0.02 1.02 16 8 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 9 C 0.12 -0.71 5.06 86.38 0.44 -0.27 16 10 N -0.71 3.02 5.28 -466.41 -2.46 0.56 16 11 C 0.58 2.19 7.81 86.65 0.68 2.87 16 12 O -0.57 -6.32 14.85 -4.08 -0.06 -6.38 16 13 C -0.22 -0.50 6.31 -18.99 -0.12 -0.62 16 14 C 0.04 0.17 7.00 25.26 0.18 0.35 16 15 C 0.13 0.66 4.74 71.23 0.34 1.00 16 16 O -0.32 -3.01 10.12 -92.44 -0.94 -3.95 16 17 C 0.12 1.03 6.69 22.51 0.15 1.18 16 18 C -0.21 -1.04 9.04 22.37 0.20 -0.84 16 19 C -0.08 -0.32 8.66 22.25 0.19 -0.13 16 20 C -0.12 -0.60 5.38 -19.85 -0.11 -0.71 16 21 C -0.08 -0.08 2.79 71.24 0.20 0.12 16 22 O -0.56 -1.98 12.81 -148.98 -1.91 -3.89 16 23 Si 0.76 -0.54 29.85 68.60 2.05 1.51 16 24 C -0.06 -0.32 9.68 22.26 0.22 -0.11 16 25 C -0.16 -1.17 9.99 22.37 0.22 -0.94 16 26 O -0.18 -0.45 10.52 4.52 0.05 -0.40 16 27 C -0.02 0.08 12.03 66.89 0.80 0.88 16 28 C -0.19 0.98 10.60 23.65 0.25 1.23 16 29 C -0.11 1.21 5.20 30.61 0.16 1.37 16 30 C -0.11 1.07 5.16 30.61 0.16 1.23 16 31 H 0.07 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H 0.07 -0.77 8.14 -2.39 -0.02 -0.79 16 33 H 0.07 -0.87 8.14 -2.39 -0.02 -0.88 16 34 H 0.08 -0.99 7.18 -2.39 -0.02 -1.01 16 35 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.41 -4.17 6.82 -92.70 -0.63 -4.81 16 38 H 0.10 0.09 7.65 -2.39 -0.02 0.07 16 39 H 0.11 0.60 6.02 -2.39 -0.01 0.59 16 40 H 0.15 0.11 6.30 -2.91 -0.02 0.09 16 41 H 0.14 -0.01 4.86 -2.91 -0.01 -0.02 16 42 H 0.10 -0.29 7.96 -2.39 -0.02 -0.31 16 43 H 0.39 -1.86 8.74 -74.06 -0.65 -2.51 16 44 H -0.28 -0.83 7.11 99.48 0.71 -0.13 16 45 H -0.30 -1.87 7.05 99.48 0.70 -1.17 16 46 H 0.14 0.35 8.06 -2.91 -0.02 0.33 16 47 H 0.14 0.72 8.06 -2.91 -0.02 0.70 16 48 H 0.25 -3.42 8.06 -2.91 -0.02 -3.44 16 49 H 0.19 -2.46 7.74 -2.91 -0.02 -2.48 16 50 H 0.08 -0.84 8.14 -2.39 -0.02 -0.86 16 51 H 0.08 -0.95 8.14 -2.39 -0.02 -0.97 16 52 H 0.07 -0.67 8.14 -2.39 -0.02 -0.69 16 53 H 0.08 -0.71 8.14 -2.38 -0.02 -0.72 16 Total: 0.00 -30.53 438.95 2.34 -28.18 By element: Atomic # 1 Polarization: -22.79 SS G_CDS: -0.28 Total: -23.07 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 5.52 Total: 11.74 kcal Atomic # 7 Polarization: -1.65 SS G_CDS: -2.09 Total: -3.74 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -2.86 Total: -14.61 kcal Atomic # 14 Polarization: -0.54 SS G_CDS: 2.05 Total: 1.51 kcal Total: -30.53 2.34 -28.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16496578_4549634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.940 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.23 seconds