Wall clock time and date at job start Sun Mar 7 2021 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37945 * 120.07679 * 2 1 4 4 C 1.38378 * 120.14584 * 179.74446 * 3 2 1 5 5 C 1.50702 * 119.85544 * 180.27618 * 4 3 2 6 6 C 1.38338 * 120.29199 * 0.55590 * 4 3 2 7 7 C 1.50698 * 119.92952 * 179.72590 * 6 4 3 8 8 O 1.42902 * 109.47009 * 284.97831 * 7 6 4 9 9 Si 1.86292 * 109.47436 * 164.97644 * 7 6 4 10 10 C 1.37976 * 120.14622 * 359.69840 * 6 4 3 11 11 C 1.39560 * 119.85133 * 0.02562 * 10 6 4 12 12 C 1.47849 * 120.14409 * 179.97438 * 11 10 6 13 13 O 1.21553 * 120.00176 * 173.82427 * 12 11 10 14 14 N 1.34783 * 119.99937 * 353.82530 * 12 11 10 15 15 C 1.46496 * 120.00048 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47192 * 179.97438 * 15 14 12 17 17 H 1.08994 * 109.46918 * 54.99837 * 16 15 14 18 18 C 1.52997 * 109.46792 * 174.99825 * 16 15 14 19 19 C 1.53000 * 109.46792 * 179.97438 * 18 16 15 20 20 C 1.53001 * 109.47265 * 299.99830 * 19 18 16 21 21 H 1.09007 * 109.47163 * 300.00110 * 20 19 18 22 22 C 1.47195 * 109.47645 * 180.02562 * 20 19 18 23 23 N 9.20370 * 94.29664 * 210.14547 * 9 1 2 24 24 C 1.53002 * 109.47049 * 59.99688 * 20 19 18 25 25 C 1.52994 * 109.46804 * 294.99659 * 16 15 14 26 26 H 1.09001 * 109.47306 * 262.88223 * 1 2 3 27 27 H 1.09003 * 109.46590 * 22.87556 * 1 2 3 28 28 H 1.08996 * 109.47267 * 142.87182 * 1 2 3 29 29 H 1.07996 * 119.92086 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.46926 * 270.27814 * 5 4 3 31 31 H 1.09001 * 109.46530 * 30.27398 * 5 4 3 32 32 H 1.09001 * 109.47247 * 150.27249 * 5 4 3 33 33 H 1.09002 * 109.47249 * 44.96931 * 7 6 4 34 34 H 0.96703 * 113.99773 * 300.00033 * 8 7 6 35 35 H 1.48509 * 110.00095 * 179.97438 * 9 7 6 36 36 H 1.48502 * 110.00049 * 301.31417 * 9 7 6 37 37 H 1.08005 * 120.07457 * 180.02562 * 10 6 4 38 38 H 0.97003 * 119.99459 * 359.97438 * 14 12 11 39 39 H 1.09001 * 109.46799 * 299.99739 * 15 14 12 40 40 H 1.08995 * 109.47059 * 59.99270 * 15 14 12 41 41 H 1.08998 * 109.47706 * 299.99660 * 18 16 15 42 42 H 1.08999 * 109.47553 * 59.99870 * 18 16 15 43 43 H 1.08997 * 109.47631 * 59.99896 * 19 18 16 44 44 H 1.09002 * 109.47400 * 180.02562 * 19 18 16 45 45 H 1.09007 * 109.46794 * 60.00196 * 24 20 19 46 46 H 1.08999 * 109.47183 * 180.02562 * 24 20 19 47 47 H 1.09002 * 109.47824 * 299.99914 * 25 16 15 48 48 H 1.09000 * 109.47621 * 60.00343 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1937 0.0000 4 6 3.5821 1.1954 0.0053 5 6 4.3307 2.5033 0.0116 6 6 4.2813 0.0018 -0.0009 7 6 5.7883 0.0132 -0.0012 8 8 6.2616 0.3715 -1.3011 9 14 6.4223 -1.6807 0.4453 10 6 3.6021 -1.1992 -0.0062 11 6 2.2065 -1.2080 -0.0058 12 6 1.4721 -2.4912 -0.0120 13 8 0.2619 -2.4994 0.1015 14 7 2.1445 -3.6519 -0.1436 15 6 1.4168 -4.9233 -0.1504 16 6 2.4081 -6.0774 -0.3122 17 1 3.1679 -6.0157 0.4668 18 6 1.6639 -7.4090 -0.1944 19 6 2.6551 -8.5632 -0.3568 20 6 3.3233 -8.4722 -1.7302 21 1 2.5631 -8.5337 -2.5090 22 6 4.2765 -9.5829 -1.8868 23 7 5.0139 -10.4406 -2.0019 24 6 4.0674 -7.1405 -1.8480 25 6 3.0768 -5.9866 -1.6852 26 1 -0.3634 -0.1273 1.0197 27 1 -0.3632 0.9469 -0.3995 28 1 -0.3633 -0.8193 -0.6203 29 1 1.6583 2.1290 0.0004 30 1 4.5108 2.8237 -1.0145 31 1 3.7388 3.2581 0.5294 32 1 5.2837 2.3740 0.5245 33 1 6.1463 0.7393 0.7286 34 1 5.9806 -0.2323 -2.0023 35 1 7.9074 -1.6828 0.4478 36 1 5.9112 -2.0783 1.7817 37 1 4.1492 -2.1304 -0.0106 38 1 3.1102 -3.6452 -0.2346 39 1 0.8760 -5.0373 0.7891 40 1 0.7099 -4.9329 -0.9799 41 1 1.1874 -7.4738 0.7838 42 1 0.9040 -7.4708 -0.9734 43 1 3.4153 -8.5017 0.4219 44 1 2.1249 -9.5120 -0.2734 45 1 4.8276 -7.0789 -1.0692 46 1 4.5431 -7.0754 -2.8265 47 1 2.3170 -6.0484 -2.4643 48 1 3.6069 -5.0379 -1.7692 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16496578_9599494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:32:05 Heat of formation + Delta-G solvation = -33.588554 kcal Electronic energy + Delta-G solvation = -28078.277448 eV Core-core repulsion = 24291.675079 eV Total energy + Delta-G solvation = -3786.602370 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.64322 -40.34696 -39.64909 -37.66774 -37.37716 -35.85361 -34.36702 -33.62182 -32.26630 -31.61915 -29.38038 -28.67716 -26.95683 -25.50625 -23.77731 -23.52519 -23.16860 -21.94707 -21.13738 -20.57696 -18.98568 -18.61394 -17.49059 -17.38721 -16.70547 -16.31154 -16.23258 -16.10196 -15.95774 -15.58598 -15.21159 -15.07943 -14.86102 -14.67819 -14.52617 -14.48619 -14.17742 -14.16100 -14.00353 -13.83655 -13.49642 -13.25106 -13.05445 -13.05271 -12.98025 -12.83937 -12.61587 -12.58837 -12.46273 -12.12894 -11.92044 -11.87543 -11.80714 -11.45769 -11.16535 -10.92798 -10.63675 -10.39843 -10.09549 -9.85601 -9.56303 -5.07148 -0.20950 0.20194 1.29852 1.64062 1.80043 1.81864 1.82807 1.99017 2.19669 2.70052 2.99166 3.47703 3.56973 3.66550 3.77057 3.82208 3.84285 3.87113 3.88392 4.17441 4.20693 4.22359 4.35240 4.45890 4.47133 4.53841 4.55344 4.59161 4.62818 4.68749 4.71069 4.77886 4.83346 4.83917 4.88078 4.94720 5.03609 5.06701 5.11581 5.14656 5.25364 5.26435 5.29033 5.36385 5.38742 5.46106 5.51451 5.52811 5.57611 5.69031 5.83226 6.56055 6.63341 6.80808 7.24950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.027 4.027 3 C -0.138 4.138 4 C -0.035 4.035 5 C -0.120 4.120 6 C -0.140 4.140 7 C -0.071 4.071 8 O -0.550 6.550 9 Si 0.766 3.234 10 C -0.063 4.063 11 C -0.156 4.156 12 C 0.555 3.445 13 O -0.565 6.565 14 N -0.713 5.713 15 C 0.124 3.876 16 C -0.096 4.096 17 H 0.090 0.910 18 C -0.106 4.106 19 C -0.108 4.108 20 C 0.009 3.991 21 H 0.136 0.864 22 C 0.236 3.764 23 N -0.508 5.508 24 C -0.109 4.109 25 C -0.112 4.112 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.142 0.858 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.395 0.605 35 H -0.298 1.298 36 H -0.282 1.282 37 H 0.155 0.845 38 H 0.412 0.588 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.768 2.059 -1.554 2.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.156 4.156 4 C -0.035 4.035 5 C -0.176 4.176 6 C -0.141 4.141 7 C -0.180 4.180 8 O -0.358 6.358 9 Si 0.671 3.329 10 C -0.081 4.081 11 C -0.160 4.160 12 C 0.344 3.656 13 O -0.446 6.446 14 N -0.366 5.366 15 C 0.001 3.999 16 C -0.115 4.115 17 H 0.109 0.891 18 C -0.144 4.144 19 C -0.146 4.146 20 C -0.013 4.013 21 H 0.154 0.846 22 C -0.081 4.081 23 N -0.185 5.185 24 C -0.148 4.148 25 C -0.150 4.150 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.160 0.840 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.245 0.755 35 H -0.226 1.226 36 H -0.209 1.209 37 H 0.172 0.828 38 H 0.250 0.750 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.225 0.718 -0.769 1.075 hybrid contribution 0.018 0.812 0.400 0.906 sum 0.243 1.530 -0.369 1.592 Atomic orbital electron populations 1.21014 0.90158 1.03208 1.03005 1.20225 0.96961 0.92052 0.93575 1.21165 0.93636 0.98066 1.02686 1.20203 0.93505 0.95920 0.93877 1.20927 1.00002 0.93220 1.03425 1.20186 0.96500 0.92884 1.04500 1.25147 0.91173 1.12272 0.89449 1.86495 1.75946 1.56880 1.16445 0.94248 0.77528 0.78066 0.83021 1.21173 0.92365 0.97790 0.96743 1.19721 0.93767 0.93013 1.09455 1.18358 0.86724 0.84425 0.76125 1.90745 1.15202 1.87582 1.51036 1.45855 1.11616 1.05378 1.73713 1.21475 0.94933 0.81471 1.02016 1.21447 0.97473 0.93211 0.99378 0.89123 1.21454 0.97562 0.91904 1.03528 1.21526 0.98967 0.99852 0.94292 1.19297 0.93137 0.87115 1.01708 0.84608 1.30061 0.93152 0.93725 0.91124 1.81351 1.12776 1.13367 1.11004 1.21564 0.98284 0.91140 1.03774 1.21628 0.98600 0.98382 0.96389 0.91423 0.91041 0.90055 0.84022 0.89954 0.90606 0.91115 0.87375 0.75499 1.22567 1.20866 0.82833 0.74982 0.92304 0.91447 0.90809 0.90124 0.91044 0.90888 0.90595 0.90281 0.90397 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.41 8.72 71.24 0.62 0.22 16 2 C -0.03 -0.07 5.91 -19.61 -0.12 -0.19 16 3 C -0.14 -0.06 9.31 22.23 0.21 0.15 16 4 C -0.03 0.02 5.89 -19.81 -0.12 -0.10 16 5 C -0.12 0.29 9.53 71.24 0.68 0.97 16 6 C -0.14 0.36 5.25 -19.90 -0.10 0.25 16 7 C -0.07 0.27 2.04 71.24 0.15 0.42 16 8 O -0.55 2.00 12.80 -148.98 -1.91 0.09 16 9 Si 0.77 -4.56 29.91 68.60 2.05 -2.51 16 10 C -0.06 0.27 8.13 22.53 0.18 0.45 16 11 C -0.16 -0.10 5.87 -20.09 -0.12 -0.22 16 12 C 0.56 0.99 7.70 86.79 0.67 1.65 16 13 O -0.56 -5.14 13.35 -3.88 -0.05 -5.19 16 14 N -0.71 4.32 5.23 -465.97 -2.44 1.88 16 15 C 0.12 -0.89 5.06 86.38 0.44 -0.46 16 16 C -0.10 1.21 2.23 -10.80 -0.02 1.19 16 17 H 0.09 -1.22 8.14 -2.39 -0.02 -1.24 16 18 C -0.11 1.28 5.20 30.59 0.16 1.44 16 19 C -0.11 1.14 5.16 30.59 0.16 1.29 16 20 C 0.01 -0.09 2.56 -12.60 -0.03 -0.12 16 21 H 0.14 -1.85 8.14 -2.38 -0.02 -1.87 16 22 C 0.24 -0.05 14.65 89.43 1.31 1.26 16 23 N -0.51 -4.43 18.54 20.02 0.37 -4.06 16 24 C -0.11 1.37 5.16 30.58 0.16 1.52 16 25 C -0.11 1.61 5.07 30.57 0.16 1.77 16 26 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.07 0.02 8.04 -2.39 -0.02 0.00 16 28 H 0.08 0.55 5.88 -2.39 -0.01 0.54 16 29 H 0.14 -0.34 8.05 -2.91 -0.02 -0.37 16 30 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.08 -0.30 8.08 -2.39 -0.02 -0.32 16 32 H 0.07 -0.16 6.22 -2.39 -0.01 -0.17 16 33 H 0.11 -0.26 6.48 -2.39 -0.02 -0.28 16 34 H 0.40 -4.63 8.70 -74.05 -0.64 -5.27 16 35 H -0.30 -0.65 7.11 99.48 0.71 0.05 16 36 H -0.28 0.26 7.11 99.48 0.71 0.97 16 37 H 0.15 -1.74 3.52 -2.91 -0.01 -1.75 16 38 H 0.41 -5.03 5.73 -92.71 -0.53 -5.56 16 39 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 41 H 0.07 -0.81 8.14 -2.39 -0.02 -0.83 16 42 H 0.08 -1.03 8.14 -2.39 -0.02 -1.05 16 43 H 0.07 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H 0.07 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.08 -0.93 8.14 -2.38 -0.02 -0.95 16 46 H 0.08 -0.97 8.14 -2.39 -0.02 -0.99 16 47 H 0.08 -1.10 8.14 -2.39 -0.02 -1.12 16 48 H 0.09 -1.41 7.18 -2.39 -0.02 -1.43 16 Total: 0.00 -24.12 381.23 2.25 -21.87 By element: Atomic # 1 Polarization: -23.43 SS G_CDS: -0.15 Total: -23.58 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 4.37 Total: 11.50 kcal Atomic # 7 Polarization: -0.11 SS G_CDS: -2.07 Total: -2.18 kcal Atomic # 8 Polarization: -3.14 SS G_CDS: -1.96 Total: -5.10 kcal Atomic # 14 Polarization: -4.56 SS G_CDS: 2.05 Total: -2.51 kcal Total: -24.12 2.25 -21.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16496578_9599494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.721 kcal (2) G-P(sol) polarization free energy of solvation -24.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds