Wall clock time and date at job start Sun Mar 7 2021 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47050 * 2 1 4 4 C 1.53000 * 109.47091 * 240.00371 * 2 1 3 5 5 O 1.45200 * 109.47202 * 120.00313 * 2 1 3 6 6 C 1.34632 * 116.99983 * 59.99835 * 5 2 1 7 7 O 1.21508 * 120.00108 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99851 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99797 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46868 * 180.02562 * 9 8 6 11 11 F 1.39900 * 112.85416 * 48.80736 * 10 9 8 12 12 C 1.53788 * 113.61500 * 180.02562 * 10 9 8 13 13 C 1.53775 * 87.08171 * 140.06221 * 12 10 9 14 14 H 1.09000 * 113.61228 * 89.20700 * 13 12 10 15 15 C 1.53008 * 113.61125 * 220.01485 * 13 12 10 16 16 N 1.46495 * 109.46813 * 185.00235 * 15 13 12 17 17 C 1.34779 * 120.00174 * 180.02562 * 16 15 13 18 18 O 1.21518 * 119.99586 * 359.97438 * 17 16 15 19 19 C 1.48164 * 120.00228 * 180.02562 * 17 16 15 20 20 N 1.32719 * 119.72529 * 359.97438 * 19 17 16 21 21 C 1.31523 * 121.64199 * 179.97438 * 20 19 17 22 22 C 1.38557 * 120.90227 * 359.97438 * 21 20 19 23 23 C 1.50707 * 120.31947 * 180.02562 * 22 21 20 24 24 O 1.42903 * 109.46442 * 244.99555 * 23 22 21 25 25 Si 1.86293 * 109.47256 * 4.99122 * 23 22 21 26 26 C 1.38620 * 119.35671 * 0.28945 * 22 21 20 27 27 C 1.38588 * 118.48719 * 359.48911 * 26 22 21 28 28 C 1.53781 * 87.08208 * 334.56445 * 13 12 10 29 29 H 1.09001 * 109.46810 * 300.00058 * 1 2 3 30 30 H 1.09003 * 109.47116 * 59.99420 * 1 2 3 31 31 H 1.08992 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47053 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47317 * 299.99736 * 3 2 1 34 34 H 1.09001 * 109.46914 * 60.00568 * 3 2 1 35 35 H 1.09000 * 109.46906 * 299.99788 * 4 2 1 36 36 H 1.08999 * 109.47753 * 59.99664 * 4 2 1 37 37 H 1.09001 * 109.47221 * 179.97438 * 4 2 1 38 38 H 0.96994 * 119.99829 * 0.02562 * 8 6 5 39 39 H 1.09004 * 109.47132 * 60.00446 * 9 8 6 40 40 H 1.08997 * 109.47368 * 300.00414 * 9 8 6 41 41 H 1.08999 * 113.61065 * 25.50996 * 12 10 9 42 42 H 1.09002 * 113.68580 * 254.63031 * 12 10 9 43 43 H 1.08999 * 109.46706 * 65.00628 * 15 13 12 44 44 H 1.08996 * 109.47312 * 305.00346 * 15 13 12 45 45 H 0.97007 * 120.00358 * 359.97438 * 16 15 13 46 46 H 1.08001 * 119.54343 * 179.97438 * 21 20 19 47 47 H 1.08999 * 109.47345 * 124.99625 * 23 22 21 48 48 H 0.96700 * 114.00311 * 60.00230 * 24 23 22 49 49 H 1.48506 * 109.99973 * 180.02562 * 25 23 22 50 50 H 1.48493 * 110.00375 * 301.32185 * 25 23 22 51 51 H 1.07998 * 120.75920 * 179.70560 * 26 22 21 52 52 H 1.08003 * 120.47180 * 180.24212 * 27 26 22 53 53 H 1.09002 * 113.60893 * 139.97859 * 28 13 12 54 54 H 1.08993 * 113.61388 * 270.88034 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3382 7 8 0.9508 -2.5094 0.5039 8 7 2.0681 -2.6658 2.4165 9 6 1.6740 -4.0669 2.5830 10 6 2.2742 -4.6149 3.8792 11 9 2.0555 -3.7754 4.9767 12 6 1.9189 -6.0867 4.1486 13 6 3.3651 -6.2640 4.6405 14 1 3.4923 -6.0624 5.7041 15 6 4.0026 -7.5853 4.2059 16 7 5.3270 -7.7133 4.8188 17 6 6.0793 -8.8049 4.5761 18 8 5.6586 -9.6833 3.8493 19 6 7.4185 -8.9346 5.1965 20 7 7.8723 -7.9723 5.9898 21 6 9.0549 -8.0486 6.5603 22 6 9.8758 -9.1453 6.3524 23 6 11.2282 -9.2195 7.0132 24 8 12.2489 -9.1907 6.0135 25 14 11.4401 -7.7659 8.1589 26 6 9.4433 -10.1710 5.5263 27 6 8.1908 -10.0660 4.9424 28 6 3.7346 -5.0754 3.7375 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7208 -1.2495 38 1 2.6277 -2.2369 3.0827 39 1 2.0397 -4.6501 1.7378 40 1 0.5871 -4.1357 2.6287 41 1 1.6922 -6.6535 3.2456 42 1 1.1719 -6.2207 4.9310 43 1 4.1014 -7.6013 3.1205 44 1 3.3725 -8.4152 4.5257 45 1 5.6629 -7.0120 5.3988 46 1 9.3906 -7.2455 7.1996 47 1 11.3038 -10.1454 7.5832 48 1 12.2417 -8.3931 5.4668 49 1 12.7703 -7.8270 8.8164 50 1 11.3075 -6.4968 7.3993 51 1 10.0666 -11.0341 5.3447 52 1 7.8203 -10.8482 4.2964 53 1 4.4537 -4.3915 4.1885 54 1 4.0044 -5.3657 2.7222 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16499940_13287726.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:21:26 Heat of formation + Delta-G solvation = -132.624026 kcal Electronic energy + Delta-G solvation = -36455.361552 eV Core-core repulsion = 31309.371314 eV Total energy + Delta-G solvation = -5145.990238 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.194 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -48.85255 -41.88988 -41.84394 -40.51899 -39.60144 -38.41507 -38.00472 -36.16346 -35.49602 -34.79920 -33.80187 -32.98872 -30.38993 -28.39253 -28.36304 -28.30778 -27.07689 -26.83246 -25.03184 -23.93045 -23.40646 -22.29889 -21.89535 -21.27050 -20.63504 -19.41842 -19.16152 -18.68937 -17.87986 -17.81015 -17.44489 -17.08798 -16.83787 -16.77022 -16.74787 -16.51767 -16.36895 -16.14476 -16.00682 -15.81365 -15.48610 -15.44788 -15.06082 -14.96277 -14.54264 -14.48271 -14.39153 -14.34728 -14.19267 -13.74831 -13.64483 -13.47557 -13.39714 -13.36046 -13.12355 -12.94423 -12.89728 -12.63204 -12.52686 -12.40079 -12.24598 -12.12927 -12.05093 -11.58458 -11.43309 -11.40209 -11.27524 -11.15896 -11.07508 -10.69004 -10.65463 -10.41449 -10.34847 -10.09125 -4.92103 -0.59879 0.08137 1.06495 1.24623 1.54270 1.59189 1.68081 1.95218 1.97212 2.66115 2.91013 2.96673 3.09897 3.21054 3.23526 3.34002 3.49897 3.50248 3.52522 3.71160 3.71471 3.76793 3.79295 3.91733 3.93072 4.05349 4.13882 4.25146 4.33270 4.43788 4.47916 4.55900 4.59012 4.60333 4.63743 4.66398 4.72398 4.74162 4.75047 4.81613 4.83016 4.85210 4.89916 4.91070 4.99077 4.99798 5.03642 5.17056 5.24618 5.25924 5.30630 5.38236 5.42351 5.52077 6.25907 6.26338 6.42217 6.61034 7.03584 7.24084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.591 6.591 8 N -0.702 5.702 9 C 0.130 3.870 10 C 0.082 3.918 11 F -0.195 7.195 12 C -0.133 4.133 13 C -0.112 4.112 14 H 0.111 0.889 15 C 0.129 3.871 16 N -0.698 5.698 17 C 0.567 3.433 18 O -0.567 6.567 19 C 0.063 3.937 20 N -0.459 5.459 21 C 0.099 3.901 22 C -0.140 4.140 23 C -0.078 4.078 24 O -0.544 6.544 25 Si 0.766 3.234 26 C -0.053 4.053 27 C -0.116 4.116 28 C -0.145 4.145 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.416 0.584 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.420 0.580 46 H 0.185 0.815 47 H 0.137 0.863 48 H 0.388 0.612 49 H -0.300 1.300 50 H -0.274 1.274 51 H 0.161 0.839 52 H 0.149 0.851 53 H 0.090 0.910 54 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 2.154 3.792 4.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.399 3.601 7 O -0.482 6.482 8 N -0.362 5.362 9 C 0.007 3.993 10 C 0.063 3.937 11 F -0.176 7.176 12 C -0.171 4.171 13 C -0.130 4.130 14 H 0.129 0.871 15 C 0.006 3.994 16 N -0.349 5.349 17 C 0.352 3.648 18 O -0.446 6.446 19 C -0.074 4.074 20 N -0.170 5.170 21 C -0.060 4.060 22 C -0.142 4.142 23 C -0.188 4.188 24 O -0.352 6.352 25 Si 0.670 3.330 26 C -0.078 4.078 27 C -0.137 4.137 28 C -0.182 4.182 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.252 0.748 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.140 0.860 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.257 0.743 46 H 0.202 0.798 47 H 0.154 0.846 48 H 0.238 0.762 49 H -0.228 1.228 50 H -0.200 1.200 51 H 0.178 0.822 52 H 0.166 0.834 53 H 0.108 0.892 54 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.373 2.246 3.402 4.302 hybrid contribution 1.181 -0.132 -0.734 1.397 sum 2.555 2.115 2.668 4.257 Atomic orbital electron populations 1.22478 0.94016 1.03723 1.03542 1.22384 0.94503 0.92614 0.81486 1.21895 1.02476 0.90857 1.04262 1.22472 1.01662 1.02278 0.97268 1.86314 1.71522 1.23180 1.47388 1.18257 0.78688 0.80854 0.82301 1.90914 1.42055 1.71000 1.44226 1.44536 1.55502 1.12657 1.23480 1.21898 1.01006 0.79435 0.96972 1.22114 0.99179 0.90057 0.82345 1.92871 1.95792 1.73239 1.55649 1.23567 0.97042 0.92008 1.04489 1.22696 0.95894 0.93258 1.01172 0.87119 1.21473 0.82167 0.97584 0.98213 1.45797 1.17892 1.21454 1.49787 1.18069 0.84095 0.82212 0.80391 1.90799 1.72989 1.41732 1.39113 1.21118 0.95415 0.92990 0.97872 1.67519 1.15360 1.27370 1.06762 1.23049 0.88943 0.97196 0.96848 1.21667 0.98429 0.95462 0.98657 1.25216 0.83337 1.14505 0.95726 1.86619 1.52975 1.46596 1.49033 0.94071 0.83840 0.73573 0.81487 1.21743 0.94236 0.98972 0.92883 1.22288 0.94437 0.98027 0.98973 1.23793 0.94349 0.97701 1.02398 0.92023 0.89353 0.91748 0.91155 0.88226 0.91242 0.91686 0.89410 0.91893 0.74802 0.88233 0.90462 0.85987 0.88716 0.90831 0.91002 0.74266 0.79828 0.84582 0.76238 1.22808 1.19973 0.82162 0.83371 0.89159 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.63 8.37 71.98 0.60 -0.02 16 2 C 0.13 0.40 1.13 -10.79 -0.01 0.39 16 3 C -0.14 0.26 8.85 71.98 0.64 0.89 16 4 C -0.18 -0.55 8.37 71.98 0.60 0.05 16 5 O -0.37 -2.20 9.94 -55.41 -0.55 -2.75 16 6 C 0.65 4.44 8.06 129.79 1.05 5.49 16 7 O -0.59 -6.88 11.88 19.82 0.24 -6.64 16 8 N -0.70 -0.70 5.47 -590.86 -3.23 -3.94 16 9 C 0.13 -0.29 5.37 86.38 0.46 0.17 16 10 C 0.08 -0.41 1.67 -10.27 -0.02 -0.43 16 11 F -0.20 0.05 16.79 44.97 0.76 0.81 16 12 C -0.13 1.02 7.10 31.12 0.22 1.24 16 13 C -0.11 0.82 3.73 -10.27 -0.04 0.78 16 14 H 0.11 -0.83 8.14 -2.39 -0.02 -0.85 16 15 C 0.13 -0.45 5.51 86.38 0.48 0.03 16 16 N -0.70 0.57 5.54 -465.66 -2.58 -2.01 16 17 C 0.57 2.95 7.81 86.88 0.68 3.63 16 18 O -0.57 -6.70 16.32 -3.77 -0.06 -6.76 16 19 C 0.06 0.19 6.75 41.91 0.28 0.47 16 20 N -0.46 -0.14 9.54 -184.91 -1.76 -1.90 16 21 C 0.10 -0.34 9.84 84.82 0.83 0.49 16 22 C -0.14 0.56 5.37 -19.69 -0.11 0.46 16 23 C -0.08 0.45 2.82 71.24 0.20 0.65 16 24 O -0.54 1.15 12.84 -148.98 -1.91 -0.76 16 25 Si 0.77 -5.08 29.91 68.60 2.05 -3.03 16 26 C -0.05 0.12 9.83 22.44 0.22 0.34 16 27 C -0.12 -0.16 9.63 22.61 0.22 0.06 16 28 C -0.14 1.06 7.08 31.12 0.22 1.28 16 29 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 36 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.42 -0.70 8.30 -92.71 -0.77 -1.46 16 39 H 0.10 -0.34 7.95 -2.39 -0.02 -0.35 16 40 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.12 -1.22 8.06 -2.39 -0.02 -1.24 16 42 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.07 -0.19 7.84 -2.39 -0.02 -0.21 16 44 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.42 -1.59 7.80 -92.70 -0.72 -2.31 16 46 H 0.19 -1.54 4.86 -2.91 -0.01 -1.56 16 47 H 0.14 -1.06 7.96 -2.39 -0.02 -1.08 16 48 H 0.39 -2.91 8.70 -74.06 -0.64 -3.55 16 49 H -0.30 -0.54 7.11 99.48 0.71 0.16 16 50 H -0.27 0.96 7.01 99.48 0.70 1.65 16 51 H 0.16 -0.86 8.06 -2.91 -0.02 -0.88 16 52 H 0.15 0.24 7.64 -2.91 -0.02 0.22 16 53 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 54 H 0.11 -0.90 7.72 -2.39 -0.02 -0.92 16 Total: 0.00 -22.93 443.99 -1.68 -24.61 By element: Atomic # 1 Polarization: -12.44 SS G_CDS: -1.15 Total: -13.59 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 6.53 Total: 15.96 kcal Atomic # 7 Polarization: -0.27 SS G_CDS: -7.58 Total: -7.85 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -2.29 Total: -16.92 kcal Atomic # 9 Polarization: 0.05 SS G_CDS: 0.76 Total: 0.81 kcal Atomic # 14 Polarization: -5.08 SS G_CDS: 2.05 Total: -3.03 kcal Total: -22.93 -1.68 -24.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16499940_13287726.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.011 kcal (2) G-P(sol) polarization free energy of solvation -22.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds