Wall clock time and date at job start Sun Mar 7 2021 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46967 * 2 1 4 4 C 1.52995 * 109.47369 * 239.99704 * 2 1 3 5 5 O 1.45206 * 109.46634 * 119.99880 * 2 1 3 6 6 C 1.34631 * 117.00024 * 59.99857 * 5 2 1 7 7 O 1.21509 * 120.00063 * 0.02562 * 6 5 2 8 8 N 1.34783 * 120.00018 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00322 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47269 * 180.02562 * 9 8 6 11 11 F 1.39901 * 112.84664 * 316.19209 * 10 9 8 12 12 C 1.53779 * 113.61561 * 87.50029 * 10 9 8 13 13 C 1.53784 * 87.08045 * 139.98260 * 12 10 9 14 14 H 1.08994 * 113.61477 * 89.11454 * 13 12 10 15 15 C 1.52997 * 113.61270 * 220.02125 * 13 12 10 16 16 N 1.46498 * 109.47070 * 272.49429 * 15 13 12 17 17 C 1.34783 * 120.00214 * 179.97438 * 16 15 13 18 18 O 1.21546 * 119.99742 * 0.02562 * 17 16 15 19 19 C 1.47837 * 120.00094 * 180.02562 * 17 16 15 20 20 C 1.39527 * 120.55782 * 359.97438 * 19 17 16 21 21 N 1.31694 * 120.56363 * 180.02562 * 20 19 17 22 22 C 1.31928 * 121.88332 * 359.97438 * 21 20 19 23 23 C 1.38358 * 121.07740 * 359.97438 * 22 21 20 24 24 C 1.50701 * 120.34902 * 180.02562 * 23 22 21 25 25 O 1.42895 * 109.46959 * 120.00426 * 24 23 22 26 26 Si 1.86302 * 109.47064 * 0.02562 * 24 23 22 27 27 C 1.38355 * 119.30237 * 359.72642 * 23 22 21 28 28 C 1.53779 * 113.61250 * 185.00070 * 10 9 8 29 29 H 1.08997 * 109.47583 * 300.00603 * 1 2 3 30 30 H 1.09006 * 109.46463 * 60.00327 * 1 2 3 31 31 H 1.09000 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46575 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47158 * 299.99371 * 3 2 1 34 34 H 1.08994 * 109.47076 * 59.99659 * 3 2 1 35 35 H 1.09006 * 109.47166 * 300.00499 * 4 2 1 36 36 H 1.08995 * 109.47145 * 59.99799 * 4 2 1 37 37 H 1.08998 * 109.47501 * 180.02562 * 4 2 1 38 38 H 0.97001 * 119.99387 * 0.02562 * 8 6 5 39 39 H 1.09007 * 109.47181 * 59.99801 * 9 8 6 40 40 H 1.08998 * 109.47105 * 300.00326 * 9 8 6 41 41 H 1.09002 * 113.61557 * 25.43372 * 12 10 9 42 42 H 1.09004 * 113.61501 * 254.52792 * 12 10 9 43 43 H 1.08998 * 109.47573 * 32.49481 * 15 13 12 44 44 H 1.09003 * 109.47157 * 152.50001 * 15 13 12 45 45 H 0.96997 * 120.00287 * 0.02562 * 16 15 13 46 46 H 1.07995 * 119.71975 * 0.02562 * 20 19 17 47 47 H 1.08000 * 119.46145 * 180.02562 * 22 21 20 48 48 H 1.08999 * 109.47223 * 240.00285 * 24 23 22 49 49 H 0.96707 * 114.00172 * 299.99387 * 25 24 23 50 50 H 1.48503 * 110.00025 * 58.67920 * 26 24 23 51 51 H 1.48490 * 109.99992 * 179.97438 * 26 24 23 52 52 H 1.08004 * 120.85527 * 180.29517 * 27 23 22 53 53 H 1.08997 * 113.61646 * 105.47109 * 28 10 9 54 54 H 1.08998 * 113.69354 * 334.57417 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9722 1.3384 7 8 0.9515 -2.5096 0.5037 8 7 2.0679 -2.6657 2.4168 9 6 1.6746 -4.0671 2.5829 10 6 2.2745 -4.6150 3.8793 11 9 3.6103 -4.2406 4.0605 12 6 1.3924 -4.3751 5.1159 13 6 1.7828 -5.7910 5.5717 14 1 2.6888 -5.8205 6.1769 15 6 0.6256 -6.5757 6.1930 16 7 0.5539 -6.2863 7.6273 17 6 -0.3956 -6.8693 8.3858 18 8 -1.1921 -7.6354 7.8797 19 6 -0.4683 -6.5769 9.8331 20 6 0.4403 -5.6997 10.4261 21 7 0.3759 -5.4395 11.7155 22 6 -0.5380 -5.9886 12.4924 23 6 -1.4756 -6.8681 11.9806 24 6 -2.5127 -7.4854 12.8830 25 8 -3.8175 -7.1225 12.4271 26 14 -2.2691 -6.8668 14.6233 27 6 -1.4548 -7.1699 10.6305 28 6 2.0221 -6.1175 4.0881 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2075 -2.1391 37 1 3.1301 -0.7217 -1.2489 38 1 2.6274 -2.2367 3.0830 39 1 2.0411 -4.6499 1.7377 40 1 0.5878 -4.1366 2.6280 41 1 0.3331 -4.2680 4.8825 42 1 1.7642 -3.5874 5.7713 43 1 -0.3096 -6.2826 5.7160 44 1 0.7899 -7.6431 6.0455 45 1 1.1892 -5.6746 8.0311 46 1 1.2029 -5.2301 9.8226 47 1 -0.5552 -5.7471 13.5449 48 1 -2.4104 -8.5705 12.8650 49 1 -3.9795 -6.1691 12.4168 50 1 -2.3749 -5.3859 14.6555 51 1 -3.2861 -7.4678 15.5230 52 1 -2.1777 -7.8493 10.2037 53 1 2.9022 -6.7364 3.9137 54 1 1.1353 -6.4882 3.5740 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16499940_13287814.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:21:49 Heat of formation + Delta-G solvation = -132.921846 kcal Electronic energy + Delta-G solvation = -36463.774682 eV Core-core repulsion = 31317.771529 eV Total energy + Delta-G solvation = -5146.003152 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.194 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -48.86097 -41.91988 -41.84795 -40.54128 -39.59438 -38.41837 -38.08629 -36.17808 -35.53889 -34.80986 -33.77999 -33.20523 -30.27905 -28.39604 -28.33106 -27.84074 -27.27942 -26.99956 -25.31887 -23.85204 -23.52752 -22.30885 -21.75796 -21.23961 -20.57353 -19.40983 -19.21371 -18.25641 -17.99150 -17.78224 -17.75644 -17.44578 -17.07706 -16.76746 -16.72418 -16.62528 -16.37561 -16.20106 -15.88264 -15.80546 -15.47737 -15.43358 -15.00227 -14.87161 -14.60610 -14.48201 -14.39658 -14.36141 -14.20951 -13.78164 -13.66560 -13.44238 -13.39606 -13.36011 -13.12538 -12.94790 -12.89924 -12.81244 -12.53277 -12.39813 -12.23680 -12.12154 -12.04578 -11.60428 -11.43667 -11.39553 -11.28271 -11.16538 -11.10829 -10.72425 -10.57298 -10.39982 -10.34770 -10.12976 -4.94938 -0.57565 -0.03313 1.06377 1.21992 1.57783 1.65429 1.67645 1.91276 1.98929 2.62710 2.94624 3.07944 3.11647 3.20515 3.21793 3.31577 3.39761 3.49980 3.53177 3.65022 3.71107 3.72400 3.76521 3.79051 3.91458 4.03889 4.11063 4.24857 4.28943 4.33557 4.43713 4.53584 4.55627 4.58686 4.64419 4.66978 4.72496 4.73833 4.75196 4.81622 4.82892 4.84966 4.85203 4.90200 4.93716 4.99219 5.03867 5.17042 5.22534 5.24249 5.30208 5.32975 5.41843 5.52065 6.25641 6.34685 6.39949 6.65188 7.02787 7.23813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.369 6.369 6 C 0.645 3.355 7 O -0.591 6.591 8 N -0.702 5.702 9 C 0.128 3.872 10 C 0.081 3.919 11 F -0.194 7.194 12 C -0.145 4.145 13 C -0.110 4.110 14 H 0.116 0.884 15 C 0.131 3.869 16 N -0.707 5.707 17 C 0.563 3.437 18 O -0.576 6.576 19 C -0.197 4.197 20 C 0.147 3.853 21 N -0.494 5.494 22 C 0.129 3.871 23 C -0.174 4.174 24 C -0.082 4.082 25 O -0.547 6.547 26 Si 0.774 3.226 27 C -0.002 4.002 28 C -0.136 4.136 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.416 0.584 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.416 0.584 46 H 0.192 0.808 47 H 0.183 0.817 48 H 0.130 0.870 49 H 0.387 0.613 50 H -0.273 1.273 51 H -0.298 1.298 52 H 0.136 0.864 53 H 0.093 0.907 54 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 2.939 2.990 6.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.399 3.601 7 O -0.482 6.482 8 N -0.362 5.362 9 C 0.006 3.994 10 C 0.063 3.937 11 F -0.175 7.175 12 C -0.182 4.182 13 C -0.129 4.129 14 H 0.134 0.866 15 C 0.008 3.992 16 N -0.359 5.359 17 C 0.350 3.650 18 O -0.456 6.456 19 C -0.202 4.202 20 C -0.011 4.011 21 N -0.202 5.202 22 C -0.027 4.027 23 C -0.176 4.176 24 C -0.191 4.191 25 O -0.355 6.355 26 Si 0.678 3.322 27 C -0.029 4.029 28 C -0.174 4.174 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.129 0.871 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.254 0.746 46 H 0.209 0.791 47 H 0.200 0.800 48 H 0.148 0.852 49 H 0.237 0.763 50 H -0.199 1.199 51 H -0.226 1.226 52 H 0.154 0.846 53 H 0.112 0.888 54 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.961 2.597 3.105 5.663 hybrid contribution -0.973 0.252 -0.868 1.328 sum 2.988 2.849 2.236 4.695 Atomic orbital electron populations 1.22477 0.93883 1.03754 1.03591 1.22378 0.94571 0.92573 0.81409 1.21897 1.02453 0.90858 1.04310 1.22481 1.01628 1.02277 0.97415 1.86315 1.71517 1.23206 1.47358 1.18266 0.78720 0.80865 0.82276 1.90915 1.42229 1.70993 1.44095 1.44533 1.55511 1.12567 1.23579 1.21926 1.01349 0.79007 0.97158 1.22123 0.78050 0.98191 0.95382 1.92869 1.35814 1.92535 1.96256 1.23824 1.00965 0.98157 0.95277 1.22710 0.98712 0.95108 0.96367 0.86602 1.21414 0.98620 1.00190 0.79008 1.45769 1.33058 1.47497 1.09614 1.18181 0.80758 0.79911 0.86143 1.90807 1.42442 1.37660 1.74685 1.21016 1.00948 1.03860 0.94417 1.23460 0.95295 0.91227 0.91136 1.67815 1.22614 1.23908 1.05827 1.23221 0.88666 0.90059 1.00705 1.21363 1.00232 1.00762 0.95251 1.25285 0.81303 1.05334 1.07183 1.86614 1.31137 1.30162 1.87627 0.94098 0.88124 0.78029 0.71989 1.21643 0.94376 0.94171 0.92712 1.23581 1.05180 0.93084 0.95556 0.91854 0.89427 0.91705 0.91234 0.88237 0.91121 0.91757 0.89360 0.92008 0.74748 0.90516 0.88362 0.87075 0.88724 0.91076 0.91280 0.74593 0.79088 0.80039 0.85250 0.76311 1.19936 1.22626 0.84591 0.88831 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 2 C 0.13 0.36 1.13 -10.79 -0.01 0.35 16 3 C -0.14 0.30 8.85 71.98 0.64 0.93 16 4 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 5 O -0.37 -2.05 9.94 -55.40 -0.55 -2.60 16 6 C 0.65 4.15 8.06 129.79 1.05 5.19 16 7 O -0.59 -6.67 11.88 19.81 0.24 -6.43 16 8 N -0.70 -0.26 5.45 -590.85 -3.22 -3.48 16 9 C 0.13 -0.39 5.43 86.38 0.47 0.08 16 10 C 0.08 -0.53 1.74 -10.27 -0.02 -0.54 16 11 F -0.19 0.36 16.58 44.97 0.75 1.11 16 12 C -0.14 1.39 7.08 31.12 0.22 1.61 16 13 C -0.11 1.09 3.73 -10.27 -0.04 1.05 16 14 H 0.12 -1.28 8.14 -2.39 -0.02 -1.30 16 15 C 0.13 -0.77 5.51 86.38 0.48 -0.30 16 16 N -0.71 3.77 5.51 -465.99 -2.57 1.20 16 17 C 0.56 1.36 7.78 86.78 0.68 2.04 16 18 O -0.58 -6.60 16.42 -3.86 -0.06 -6.66 16 19 C -0.20 -0.05 5.89 -19.99 -0.12 -0.17 16 20 C 0.15 -0.53 10.71 85.02 0.91 0.38 16 21 N -0.49 0.43 10.35 -194.75 -2.01 -1.59 16 22 C 0.13 -0.35 9.84 84.71 0.83 0.48 16 23 C -0.17 0.27 5.39 -19.81 -0.11 0.16 16 24 C -0.08 0.21 2.84 71.24 0.20 0.42 16 25 O -0.55 -0.74 12.77 -148.98 -1.90 -2.64 16 26 Si 0.77 -3.88 29.82 68.60 2.05 -1.83 16 27 C 0.00 -0.01 9.30 22.73 0.21 0.21 16 28 C -0.14 1.21 7.10 31.12 0.22 1.43 16 29 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 31 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 32 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 33 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 34 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.06 0.54 5.88 -2.38 -0.01 0.52 16 36 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.42 -0.98 8.14 -92.71 -0.75 -1.74 16 39 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 40 H 0.10 -0.39 7.84 -2.39 -0.02 -0.41 16 41 H 0.11 -1.12 7.65 -2.39 -0.02 -1.13 16 42 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 43 H 0.07 -0.30 7.84 -2.39 -0.02 -0.32 16 44 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.42 -4.80 6.54 -92.71 -0.61 -5.40 16 46 H 0.19 -2.15 6.42 -2.91 -0.02 -2.17 16 47 H 0.18 -1.38 4.88 -2.91 -0.01 -1.39 16 48 H 0.13 -0.50 7.96 -2.39 -0.02 -0.52 16 49 H 0.39 -1.76 8.70 -74.05 -0.64 -2.40 16 50 H -0.27 0.53 7.11 99.48 0.71 1.24 16 51 H -0.30 -0.94 7.11 99.48 0.71 -0.23 16 52 H 0.14 0.68 7.74 -2.91 -0.02 0.65 16 53 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 54 H 0.12 -1.28 8.06 -2.39 -0.02 -1.30 16 Total: 0.00 -26.39 441.30 -1.48 -27.87 By element: Atomic # 1 Polarization: -17.39 SS G_CDS: -1.00 Total: -18.39 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 6.81 Total: 13.45 kcal Atomic # 7 Polarization: 3.94 SS G_CDS: -7.81 Total: -3.87 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -2.28 Total: -18.34 kcal Atomic # 9 Polarization: 0.36 SS G_CDS: 0.75 Total: 1.11 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.05 Total: -1.83 kcal Total: -26.39 -1.48 -27.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16499940_13287814.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.051 kcal (2) G-P(sol) polarization free energy of solvation -26.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds