Wall clock time and date at job start Sun Mar 7 2021 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47303 * 2 1 4 4 C 1.53005 * 109.47222 * 239.99760 * 2 1 3 5 5 O 1.45201 * 109.47220 * 120.00094 * 2 1 3 6 6 C 1.34641 * 117.00011 * 59.99707 * 5 2 1 7 7 O 1.21513 * 119.99830 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00138 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00161 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47057 * 180.02562 * 9 8 6 11 11 F 1.39901 * 112.90952 * 316.25170 * 10 9 8 12 12 C 1.53779 * 113.61529 * 87.50494 * 10 9 8 13 13 C 1.53779 * 87.08402 * 139.98073 * 12 10 9 14 14 H 1.09000 * 113.61527 * 89.11480 * 13 12 10 15 15 C 1.53005 * 113.69064 * 220.00975 * 13 12 10 16 16 N 1.46499 * 109.46872 * 272.52979 * 15 13 12 17 17 C 1.34777 * 119.99733 * 179.97438 * 16 15 13 18 18 O 1.21615 * 120.00087 * 0.02562 * 17 16 15 19 19 C 1.47374 * 120.00054 * 180.02562 * 17 16 15 20 20 C 1.36420 * 127.19211 * 359.68442 * 19 17 16 21 21 O 1.33647 * 108.39776 * 179.89381 * 20 19 17 22 22 C 1.34224 * 110.91004 * 0.39048 * 21 20 19 23 23 C 1.50690 * 125.43986 * 179.76191 * 22 21 20 24 24 O 1.42898 * 109.47328 * 119.99929 * 23 22 21 25 25 Si 1.86311 * 109.47130 * 359.97438 * 23 22 21 26 26 C 1.34177 * 109.12015 * 359.76282 * 22 21 20 27 27 C 1.53784 * 113.61233 * 185.00081 * 10 9 8 28 28 H 1.08998 * 109.47213 * 299.99758 * 1 2 3 29 29 H 1.08996 * 109.47274 * 60.00045 * 1 2 3 30 30 H 1.08999 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47286 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46919 * 300.00172 * 3 2 1 33 33 H 1.08998 * 109.46788 * 59.99982 * 3 2 1 34 34 H 1.09001 * 109.46923 * 300.00518 * 4 2 1 35 35 H 1.09002 * 109.46589 * 60.00313 * 4 2 1 36 36 H 1.08998 * 109.47074 * 180.02562 * 4 2 1 37 37 H 0.97005 * 119.99592 * 0.02562 * 8 6 5 38 38 H 1.08994 * 109.46583 * 60.00367 * 9 8 6 39 39 H 1.09001 * 109.46856 * 300.00825 * 9 8 6 40 40 H 1.09006 * 113.61307 * 25.43275 * 12 10 9 41 41 H 1.09007 * 113.61642 * 254.53032 * 12 10 9 42 42 H 1.08995 * 109.46809 * 32.53527 * 15 13 12 43 43 H 1.09006 * 109.46737 * 152.53023 * 15 13 12 44 44 H 0.96993 * 120.00253 * 0.02562 * 16 15 13 45 45 H 1.07999 * 125.79789 * 0.02562 * 20 19 17 46 46 H 1.09002 * 109.47383 * 240.00308 * 23 22 21 47 47 H 0.96698 * 114.00061 * 299.99823 * 24 23 22 48 48 H 1.48501 * 109.99990 * 180.02562 * 25 23 22 49 49 H 1.48496 * 109.99762 * 301.32206 * 25 23 22 50 50 H 1.07999 * 127.02346 * 180.02562 * 26 22 21 51 51 H 1.09004 * 113.61451 * 105.47254 * 27 10 9 52 52 H 1.08994 * 113.61477 * 334.56556 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0680 -2.6658 2.4166 9 6 1.6748 -4.0673 2.5826 10 6 2.2748 -4.6152 3.8789 11 9 3.6103 -4.2405 4.0619 12 6 1.3928 -4.3754 5.1156 13 6 1.7832 -5.7913 5.5713 14 1 2.6893 -5.8209 6.1765 15 6 0.6274 -6.5776 6.1932 16 7 0.5558 -6.2881 7.6275 17 6 -0.3925 -6.8724 8.3863 18 8 -1.1885 -7.6402 7.8804 19 6 -0.4650 -6.5808 9.8291 20 6 0.3503 -5.7541 10.5453 21 8 -0.0524 -5.7649 11.8196 22 6 -1.1068 -6.5793 11.9819 23 6 -1.8176 -6.8394 13.2850 24 8 -3.1873 -6.4494 13.1666 25 14 -1.0060 -5.8547 14.6424 26 6 -1.4269 -7.1250 10.7986 27 6 2.0225 -6.1178 4.0876 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2490 37 1 2.6277 -2.2369 3.0828 38 1 2.0413 -4.6499 1.7375 39 1 0.5880 -4.1367 2.6278 40 1 0.3334 -4.2685 4.8822 41 1 1.7645 -3.5877 5.7710 42 1 -0.3084 -6.2860 5.7164 43 1 0.7931 -7.6448 6.0456 44 1 1.1904 -5.6755 8.0309 45 1 1.1789 -5.1858 10.1493 46 1 -1.7616 -7.9015 13.5238 47 1 -3.3131 -5.5144 12.9546 48 1 -1.6975 -6.1029 15.9330 49 1 0.4267 -6.2287 14.7541 50 1 -2.2279 -7.8214 10.5991 51 1 2.9026 -6.7367 3.9132 52 1 1.1353 -6.4871 3.5733 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16499940_13456056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:22:37 Heat of formation + Delta-G solvation = -154.921416 kcal Electronic energy + Delta-G solvation = -35058.403490 eV Core-core repulsion = 29941.953843 eV Total energy + Delta-G solvation = -5116.449647 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.183 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -48.85588 -43.71281 -41.84064 -40.75245 -39.59157 -38.40399 -38.00882 -36.13484 -35.46746 -34.79170 -33.93582 -31.94925 -30.20496 -28.38541 -28.31880 -27.80635 -26.99581 -26.54482 -24.62396 -23.46803 -22.34883 -22.24528 -21.39659 -21.00503 -20.39563 -19.41956 -19.25047 -17.89339 -17.79104 -17.52732 -17.44211 -17.34940 -17.16072 -16.90454 -16.61071 -16.51036 -16.25132 -15.93252 -15.80997 -15.63466 -15.46260 -15.32563 -14.88302 -14.67092 -14.46670 -14.36759 -14.24629 -14.02993 -13.81034 -13.72224 -13.50396 -13.38616 -13.35238 -13.11549 -12.93719 -12.88767 -12.81947 -12.52106 -12.38676 -12.22003 -12.21496 -12.03962 -11.51561 -11.42479 -11.37013 -11.18910 -11.12774 -10.96692 -10.64159 -10.34047 -10.19498 -9.76938 -4.97815 0.27055 0.81711 1.07234 1.19057 1.51552 1.68730 1.82500 1.94822 2.05248 2.25255 2.95564 3.10023 3.20952 3.22139 3.30332 3.47267 3.51660 3.58378 3.60708 3.72282 3.77658 3.92637 3.98968 4.06960 4.24662 4.29029 4.33901 4.41464 4.45032 4.51502 4.56609 4.59863 4.66199 4.67981 4.73809 4.74970 4.75295 4.83139 4.86157 4.87014 4.90700 4.91554 4.99213 5.04608 5.12714 5.18137 5.25388 5.27880 5.31497 5.43574 5.53205 5.83946 6.26897 6.46714 6.62853 7.14486 7.24981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.369 6.369 6 C 0.645 3.355 7 O -0.592 6.592 8 N -0.701 5.701 9 C 0.129 3.871 10 C 0.082 3.918 11 F -0.194 7.194 12 C -0.143 4.143 13 C -0.109 4.109 14 H 0.117 0.883 15 C 0.132 3.868 16 N -0.708 5.708 17 C 0.585 3.415 18 O -0.588 6.588 19 C -0.271 4.271 20 C 0.067 3.933 21 O -0.164 6.164 22 C -0.053 4.053 23 C -0.038 4.038 24 O -0.545 6.545 25 Si 0.800 3.200 26 C -0.153 4.153 27 C -0.138 4.138 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.417 0.583 45 H 0.265 0.735 46 H 0.129 0.871 47 H 0.400 0.600 48 H -0.286 1.286 49 H -0.287 1.287 50 H 0.142 0.858 51 H 0.092 0.908 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.336 7.009 2.373 8.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.399 3.601 7 O -0.483 6.483 8 N -0.361 5.361 9 C 0.006 3.994 10 C 0.063 3.937 11 F -0.174 7.174 12 C -0.180 4.180 13 C -0.127 4.127 14 H 0.135 0.865 15 C 0.008 3.992 16 N -0.360 5.360 17 C 0.374 3.626 18 O -0.470 6.470 19 C -0.275 4.275 20 C -0.003 4.003 21 O -0.060 6.060 22 C -0.101 4.101 23 C -0.147 4.147 24 O -0.354 6.354 25 Si 0.703 3.297 26 C -0.173 4.173 27 C -0.176 4.176 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.254 0.746 45 H 0.280 0.720 46 H 0.146 0.854 47 H 0.251 0.749 48 H -0.213 1.213 49 H -0.214 1.214 50 H 0.160 0.840 51 H 0.111 0.889 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.903 5.797 2.668 7.481 hybrid contribution 0.317 -0.695 -0.443 0.883 sum 4.220 5.102 2.225 6.985 Atomic orbital electron populations 1.22473 0.93867 1.03748 1.03610 1.22378 0.94583 0.92578 0.81397 1.21894 1.02440 0.90836 1.04325 1.22484 1.01615 1.02267 0.97443 1.86315 1.71507 1.23177 1.47345 1.18270 0.78717 0.80873 0.82273 1.90918 1.42238 1.71005 1.44110 1.44523 1.55506 1.12524 1.23589 1.21918 1.01348 0.79030 0.97138 1.22111 0.78090 0.98042 0.95439 1.92868 1.35828 1.92505 1.96227 1.23808 1.00928 0.98058 0.95198 1.22696 0.98615 0.95182 0.96235 0.86544 1.21364 0.98587 0.99902 0.79301 1.45638 1.33276 1.47720 1.09382 1.17503 0.80376 0.79441 0.85310 1.90799 1.43028 1.38244 1.74922 1.21498 1.03397 1.08244 0.94380 1.25335 0.98381 0.97009 0.79593 1.83715 1.39728 1.53218 1.29291 1.22760 0.91870 0.97110 0.98365 1.24671 0.85842 1.06647 0.97514 1.86543 1.21532 1.33957 1.93340 0.93187 0.75185 0.87867 0.73479 1.22555 1.00852 1.02544 0.91366 1.23594 1.05076 0.93226 0.95716 0.91798 0.89446 0.91731 0.91245 0.88264 0.91066 0.91787 0.89381 0.92022 0.74705 0.90606 0.88368 0.87138 0.88431 0.91350 0.91853 0.74563 0.71982 0.85395 0.74899 1.21250 1.21351 0.84019 0.88927 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.45 8.37 71.98 0.60 0.16 16 2 C 0.13 0.32 1.13 -10.79 -0.01 0.31 16 3 C -0.14 0.35 8.85 71.98 0.64 0.99 16 4 C -0.18 -0.55 8.37 71.98 0.60 0.06 16 5 O -0.37 -1.90 9.94 -55.50 -0.55 -2.45 16 6 C 0.65 3.94 8.06 129.79 1.05 4.99 16 7 O -0.59 -6.57 11.88 19.80 0.24 -6.33 16 8 N -0.70 0.02 5.46 -590.85 -3.22 -3.21 16 9 C 0.13 -0.41 5.43 86.38 0.47 0.06 16 10 C 0.08 -0.55 1.74 -10.27 -0.02 -0.57 16 11 F -0.19 0.45 16.58 44.97 0.75 1.20 16 12 C -0.14 1.44 7.08 31.12 0.22 1.66 16 13 C -0.11 1.07 3.73 -10.26 -0.04 1.04 16 14 H 0.12 -1.33 8.14 -2.39 -0.02 -1.35 16 15 C 0.13 -0.66 5.51 86.38 0.48 -0.19 16 16 N -0.71 3.47 5.55 -466.41 -2.59 0.88 16 17 C 0.58 2.58 7.81 86.65 0.68 3.26 16 18 O -0.59 -8.84 16.98 -4.08 -0.07 -8.91 16 19 C -0.27 -0.37 6.31 -18.99 -0.12 -0.49 16 20 C 0.07 -0.47 11.61 67.40 0.78 0.32 16 21 O -0.16 0.57 8.89 4.43 0.04 0.60 16 22 C -0.05 -0.01 6.20 24.76 0.15 0.15 16 23 C -0.04 0.06 2.97 71.23 0.21 0.27 16 24 O -0.55 0.46 12.86 -148.98 -1.92 -1.45 16 25 Si 0.80 -3.18 32.09 68.60 2.20 -0.98 16 26 C -0.15 -0.72 10.88 23.65 0.26 -0.47 16 27 C -0.14 1.19 7.10 31.12 0.22 1.41 16 28 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.06 0.49 5.88 -2.39 -0.01 0.48 16 31 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 33 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 35 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.42 -1.22 8.14 -92.70 -0.75 -1.98 16 38 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.10 -0.40 7.84 -2.39 -0.02 -0.42 16 40 H 0.11 -1.13 7.65 -2.38 -0.02 -1.15 16 41 H 0.10 -1.13 8.14 -2.38 -0.02 -1.15 16 42 H 0.07 -0.21 7.85 -2.39 -0.02 -0.22 16 43 H 0.06 -0.12 8.14 -2.38 -0.02 -0.14 16 44 H 0.42 -5.32 7.44 -92.71 -0.69 -6.01 16 45 H 0.26 -4.90 7.47 -2.91 -0.02 -4.93 16 46 H 0.13 -0.16 7.96 -2.39 -0.02 -0.18 16 47 H 0.40 -3.70 8.70 -74.06 -0.64 -4.35 16 48 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 49 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 50 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 51 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 52 H 0.12 -1.19 8.06 -2.39 -0.02 -1.21 16 Total: 0.00 -30.24 434.24 -0.03 -30.27 By element: Atomic # 1 Polarization: -21.49 SS G_CDS: -1.08 Total: -22.56 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.17 Total: 12.95 kcal Atomic # 7 Polarization: 3.48 SS G_CDS: -5.81 Total: -2.33 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -2.26 Total: -18.54 kcal Atomic # 9 Polarization: 0.45 SS G_CDS: 0.75 Total: 1.20 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.20 Total: -0.98 kcal Total: -30.24 -0.03 -30.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16499940_13456056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.652 kcal (2) G-P(sol) polarization free energy of solvation -30.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds