Wall clock time and date at job start Sun Mar 7 2021 06:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47612 * 2 1 4 4 C 1.53001 * 109.46770 * 239.99571 * 2 1 3 5 5 O 1.45206 * 109.46871 * 120.00090 * 2 1 3 6 6 C 1.34638 * 117.00052 * 59.99770 * 5 2 1 7 7 O 1.21510 * 119.99837 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99645 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99756 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47307 * 179.97438 * 9 8 6 11 11 F 1.39899 * 112.90724 * 316.25301 * 10 9 8 12 12 C 1.53777 * 113.61027 * 87.50386 * 10 9 8 13 13 C 1.53778 * 87.08149 * 139.98483 * 12 10 9 14 14 H 1.09004 * 113.68918 * 220.00526 * 13 12 10 15 15 C 1.52999 * 113.61806 * 89.11681 * 13 12 10 16 16 N 1.46496 * 109.47417 * 87.49937 * 15 13 12 17 17 C 1.34775 * 119.99728 * 179.97438 * 16 15 13 18 18 O 1.21696 * 120.00512 * 0.02562 * 17 16 15 19 19 C 1.46686 * 119.99692 * 180.02562 * 17 16 15 20 20 C 1.37867 * 126.23213 * 180.02562 * 19 17 16 21 21 C 1.39829 * 107.08546 * 179.97438 * 20 19 17 22 22 C 1.50699 * 126.06975 * 179.97438 * 21 20 19 23 23 O 1.42903 * 109.47152 * 65.00071 * 22 21 20 24 24 Si 1.86305 * 109.47184 * 184.99543 * 22 21 20 25 25 C 1.35451 * 107.86589 * 0.26137 * 21 20 19 26 26 N 1.35537 * 108.86957 * 359.56737 * 25 21 20 27 27 C 1.53781 * 87.08066 * 334.56429 * 13 12 10 28 28 H 1.09004 * 109.46715 * 300.00182 * 1 2 3 29 29 H 1.08997 * 109.46471 * 59.99631 * 1 2 3 30 30 H 1.08992 * 109.47023 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47324 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46780 * 299.99811 * 3 2 1 33 33 H 1.08998 * 109.47203 * 59.99720 * 3 2 1 34 34 H 1.09001 * 109.47222 * 299.99820 * 4 2 1 35 35 H 1.08991 * 109.47049 * 60.00634 * 4 2 1 36 36 H 1.09006 * 109.46655 * 180.02562 * 4 2 1 37 37 H 0.96999 * 120.00415 * 359.97438 * 8 6 5 38 38 H 1.09004 * 109.47362 * 59.99770 * 9 8 6 39 39 H 1.09000 * 109.47026 * 300.00063 * 9 8 6 40 40 H 1.09002 * 113.62131 * 25.43301 * 12 10 9 41 41 H 1.09007 * 113.61515 * 254.53220 * 12 10 9 42 42 H 1.09007 * 109.46785 * 327.50050 * 15 13 12 43 43 H 1.08998 * 109.46924 * 207.51051 * 15 13 12 44 44 H 0.96996 * 119.99991 * 0.02562 * 16 15 13 45 45 H 1.08001 * 126.45624 * 359.97438 * 20 19 17 46 46 H 1.08997 * 109.47198 * 304.99749 * 22 21 20 47 47 H 0.96700 * 114.00311 * 180.02562 * 23 22 21 48 48 H 1.48499 * 109.99670 * 178.68093 * 24 22 21 49 49 H 1.48497 * 110.00233 * 300.00062 * 24 22 21 50 50 H 1.07998 * 125.56928 * 179.74074 * 25 21 20 51 51 H 0.97001 * 125.67814 * 180.16880 * 26 25 21 52 52 H 1.08997 * 113.61637 * 139.98237 * 27 13 12 53 53 H 1.09004 * 113.61572 * 270.80389 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9724 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0671 -2.6654 2.4173 9 6 1.6729 -4.0665 2.5838 10 6 2.2731 -4.6146 3.8801 11 9 3.6088 -4.2408 4.0625 12 6 1.3916 -4.3738 5.1170 13 6 1.7813 -5.7898 5.5730 14 1 0.9576 -6.3492 6.0165 15 6 3.0533 -5.8320 6.4221 16 7 2.7073 -5.6261 7.8306 17 6 3.6749 -5.6241 8.7688 18 8 4.8361 -5.7928 8.4459 19 6 3.3284 -5.4185 10.1793 20 6 4.2095 -5.3919 11.2393 21 6 3.4548 -5.1700 12.3954 22 6 3.9923 -5.0646 13.7993 23 8 4.8262 -3.9089 13.9045 24 14 2.5737 -4.9178 14.9980 25 6 2.1540 -5.0731 12.0302 26 7 2.0644 -5.2164 10.6854 27 6 2.0197 -6.1169 4.0894 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1302 1.4424 -0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1391 36 1 3.1300 -0.7218 -1.2490 37 1 2.6267 -2.2366 3.0835 38 1 2.0393 -4.6500 1.7391 39 1 0.5860 -4.1353 2.6287 40 1 0.3323 -4.2661 4.8840 41 1 1.7642 -3.5861 5.7720 42 1 3.7338 -5.0452 6.0964 43 1 3.5366 -6.8019 6.3045 44 1 1.7818 -5.4920 8.0881 45 1 5.2808 -5.5185 11.1867 46 1 4.5749 -5.9556 14.0331 47 1 5.2080 -3.7780 14.7832 48 1 3.0895 -4.8451 16.3887 49 1 1.7715 -3.7068 14.6899 50 1 1.3241 -4.9059 12.7007 51 1 1.2454 -5.1858 10.1665 52 1 2.8993 -6.7365 3.9148 53 1 1.1324 -6.4871 3.5758 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500038_10543058.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:26:19 Heat of formation + Delta-G solvation = -126.188069 kcal Electronic energy + Delta-G solvation = -35288.663687 eV Core-core repulsion = 30271.178673 eV Total energy + Delta-G solvation = -5017.485014 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.194 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -48.94249 -42.46637 -41.85955 -40.57598 -39.55959 -38.43284 -37.76799 -36.18563 -35.50197 -34.80494 -32.75766 -31.12536 -30.03482 -28.40074 -28.34202 -27.65177 -27.01513 -26.19950 -24.10445 -23.45259 -22.72357 -21.41040 -21.20644 -20.74448 -20.26282 -19.52611 -19.32174 -18.45453 -17.94275 -17.52759 -17.43805 -17.13617 -16.96301 -16.78246 -16.49903 -16.30209 -15.85067 -15.72304 -15.49525 -15.36196 -15.07606 -14.97123 -14.88507 -14.64685 -14.47732 -14.44048 -14.31947 -13.99209 -13.95709 -13.75623 -13.39726 -13.34512 -13.17105 -13.07167 -12.95461 -12.91158 -12.57046 -12.54983 -12.44090 -12.34399 -12.07500 -11.95382 -11.48342 -11.44469 -11.40585 -11.22364 -11.14136 -10.39446 -10.35689 -10.31619 -9.93539 -9.29231 -4.84591 0.34656 1.06320 1.36857 1.53575 1.66585 1.69687 1.90180 2.05541 2.12678 2.24205 2.94333 3.09820 3.19663 3.25292 3.41079 3.52427 3.57336 3.70208 3.75691 3.80709 3.90599 3.97238 4.08299 4.15278 4.26379 4.30389 4.38492 4.46571 4.53809 4.57035 4.58346 4.65278 4.67965 4.71506 4.73017 4.73632 4.81561 4.83889 4.86396 4.87458 4.94568 4.97140 5.00866 5.04960 5.14971 5.23574 5.24745 5.29493 5.30492 5.50420 5.57645 5.71942 6.23283 6.33586 6.52377 6.69113 7.03874 7.22111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.372 6.372 6 C 0.646 3.354 7 O -0.589 6.589 8 N -0.704 5.704 9 C 0.131 3.869 10 C 0.069 3.931 11 F -0.200 7.200 12 C -0.142 4.142 13 C -0.113 4.113 14 H 0.126 0.874 15 C 0.128 3.872 16 N -0.709 5.709 17 C 0.587 3.413 18 O -0.578 6.578 19 C -0.069 4.069 20 C -0.107 4.107 21 C -0.191 4.191 22 C -0.065 4.065 23 O -0.566 6.566 24 Si 0.788 3.212 25 C 0.060 3.940 26 N -0.513 5.513 27 C -0.132 4.132 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.413 0.587 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.413 0.587 45 H 0.124 0.876 46 H 0.078 0.922 47 H 0.390 0.610 48 H -0.296 1.296 49 H -0.285 1.285 50 H 0.213 0.787 51 H 0.439 0.561 52 H 0.083 0.917 53 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.975 -1.834 2.651 10.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.090 3.910 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.286 6.286 6 C 0.400 3.600 7 O -0.480 6.480 8 N -0.364 5.364 9 C 0.008 3.992 10 C 0.050 3.950 11 F -0.181 7.181 12 C -0.179 4.179 13 C -0.132 4.132 14 H 0.144 0.856 15 C 0.005 3.995 16 N -0.361 5.361 17 C 0.376 3.624 18 O -0.458 6.458 19 C -0.182 4.182 20 C -0.134 4.134 21 C -0.197 4.197 22 C -0.173 4.173 23 O -0.375 6.375 24 Si 0.692 3.308 25 C -0.079 4.079 26 N -0.110 5.110 27 C -0.171 4.171 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.250 0.750 38 H 0.093 0.907 39 H 0.125 0.875 40 H 0.149 0.851 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.250 0.750 45 H 0.142 0.858 46 H 0.096 0.904 47 H 0.240 0.760 48 H -0.224 1.224 49 H -0.212 1.212 50 H 0.230 0.770 51 H 0.281 0.719 52 H 0.102 0.898 53 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.137 -1.610 1.740 10.410 hybrid contribution 1.529 0.949 0.364 1.836 sum -8.608 -0.661 2.104 8.886 Atomic orbital electron populations 1.22465 0.93634 1.03855 1.03618 1.22391 0.94757 0.92489 0.81373 1.21900 1.02346 0.90993 1.04328 1.22481 1.01515 1.02336 0.97444 1.86323 1.71588 1.23315 1.47412 1.18244 0.78739 0.80826 0.82237 1.90908 1.42159 1.70955 1.44005 1.44587 1.55509 1.12772 1.23523 1.21950 1.01626 0.78778 0.96858 1.22457 0.77918 0.98788 0.95828 1.92850 1.36469 1.92629 1.96119 1.23789 1.01704 0.97572 0.94850 1.22457 0.97423 0.98048 0.95245 0.85605 1.21305 0.97246 1.01811 0.79132 1.45609 1.10228 1.73369 1.06926 1.17239 0.85044 0.76076 0.84082 1.90857 1.20988 1.51948 1.82010 1.20082 0.86140 1.19259 0.92694 1.21241 0.98849 1.01833 0.91469 1.18969 0.93531 1.12834 0.94342 1.24566 1.02992 0.89828 0.99905 1.86575 1.66546 1.46851 1.37547 0.94284 0.78245 0.85106 0.73190 1.22291 0.98429 1.02926 0.84218 1.41785 1.07690 1.54206 1.07355 1.23621 1.05499 0.92546 0.95409 0.91842 0.89366 0.91531 0.91454 0.88134 0.91152 0.91652 0.89265 0.92237 0.75046 0.90652 0.87515 0.85093 0.90346 0.92259 0.91729 0.74961 0.85805 0.90442 0.75983 1.22366 1.21157 0.77027 0.71944 0.89826 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 2 C 0.13 0.42 1.13 -10.79 -0.01 0.40 16 3 C -0.14 0.19 8.85 71.98 0.64 0.83 16 4 C -0.18 -0.66 8.37 71.98 0.60 -0.06 16 5 O -0.37 -2.40 9.94 -55.48 -0.55 -2.95 16 6 C 0.65 4.46 8.06 129.79 1.05 5.51 16 7 O -0.59 -6.51 11.88 19.81 0.24 -6.27 16 8 N -0.70 -0.96 5.46 -590.84 -3.22 -4.18 16 9 C 0.13 -0.39 5.43 86.38 0.47 0.08 16 10 C 0.07 -0.35 1.73 -10.27 -0.02 -0.36 16 11 F -0.20 -0.47 14.79 44.97 0.67 0.19 16 12 C -0.14 1.35 7.07 31.12 0.22 1.57 16 13 C -0.11 1.09 3.94 -10.27 -0.04 1.05 16 14 H 0.13 -1.84 8.14 -2.39 -0.02 -1.86 16 15 C 0.13 -0.20 5.28 86.38 0.46 0.25 16 16 N -0.71 1.82 5.55 -467.08 -2.59 -0.78 16 17 C 0.59 4.00 7.79 86.45 0.67 4.67 16 18 O -0.58 -10.02 16.88 -4.34 -0.07 -10.10 16 19 C -0.07 -0.27 7.06 40.35 0.28 0.01 16 20 C -0.11 -0.89 10.59 22.57 0.24 -0.65 16 21 C -0.19 -0.55 5.46 -20.12 -0.11 -0.66 16 22 C -0.07 -0.05 3.01 71.24 0.21 0.16 16 23 O -0.57 -2.92 12.86 -148.98 -1.92 -4.84 16 24 Si 0.79 -3.47 30.60 68.60 2.10 -1.37 16 25 C 0.06 -0.26 10.45 83.48 0.87 0.62 16 26 N -0.51 2.84 5.99 -183.62 -1.10 1.74 16 27 C -0.13 1.17 7.13 31.12 0.22 1.40 16 28 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 29 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.07 0.48 5.88 -2.39 -0.01 0.47 16 31 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 35 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 37 H 0.41 -0.06 8.14 -92.71 -0.75 -0.82 16 38 H 0.08 -0.08 8.14 -2.38 -0.02 -0.09 16 39 H 0.11 -0.62 7.84 -2.39 -0.02 -0.63 16 40 H 0.13 -1.80 7.90 -2.39 -0.02 -1.82 16 41 H 0.08 -0.55 8.10 -2.38 -0.02 -0.57 16 42 H 0.06 0.24 6.31 -2.38 -0.02 0.23 16 43 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.41 -4.49 7.60 -92.71 -0.70 -5.19 16 45 H 0.12 1.51 8.06 -2.91 -0.02 1.49 16 46 H 0.08 -0.08 7.96 -2.39 -0.02 -0.10 16 47 H 0.39 -1.20 8.74 -74.06 -0.65 -1.85 16 48 H -0.30 -0.36 7.11 99.48 0.71 0.35 16 49 H -0.28 -0.16 7.11 99.48 0.71 0.55 16 50 H 0.21 -2.56 6.20 -2.91 -0.02 -2.58 16 51 H 0.44 -6.27 8.19 -92.71 -0.76 -7.03 16 52 H 0.08 -0.53 8.10 -2.39 -0.02 -0.55 16 53 H 0.14 -1.86 8.10 -2.38 -0.02 -1.88 16 Total: 0.00 -33.51 432.31 -1.94 -35.45 By element: Atomic # 1 Polarization: -20.01 SS G_CDS: -1.85 Total: -21.86 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 6.36 Total: 14.95 kcal Atomic # 7 Polarization: 3.70 SS G_CDS: -6.92 Total: -3.22 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -2.30 Total: -24.15 kcal Atomic # 9 Polarization: -0.47 SS G_CDS: 0.67 Total: 0.19 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.10 Total: -1.37 kcal Total: -33.51 -1.94 -35.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500038_10543058.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.738 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds