Wall clock time and date at job start Sun Mar 7 2021 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 C 1.52995 * 109.47398 * 239.99725 * 2 1 3 5 5 O 1.45201 * 109.47220 * 119.99426 * 2 1 3 6 6 C 1.34640 * 116.99950 * 60.00484 * 5 2 1 7 7 O 1.21515 * 119.99524 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00061 * 180.02562 * 6 5 2 9 9 C 1.46503 * 120.00036 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47166 * 180.02562 * 9 8 6 11 11 F 1.39898 * 112.90917 * 316.24772 * 10 9 8 12 12 C 1.53784 * 113.61673 * 87.50094 * 10 9 8 13 13 C 1.53779 * 87.08045 * 89.11647 * 12 10 9 14 14 H 1.09006 * 113.61307 * 270.88660 * 13 12 10 15 15 C 1.53003 * 113.69268 * 139.99100 * 13 12 10 16 16 N 1.46503 * 109.46622 * 87.46383 * 15 13 12 17 17 C 1.34780 * 119.99703 * 180.02562 * 16 15 13 18 18 O 1.21518 * 120.00263 * 359.97438 * 17 16 15 19 19 C 1.48174 * 120.00147 * 180.02562 * 17 16 15 20 20 N 1.32723 * 119.71762 * 359.97438 * 19 17 16 21 21 C 1.31516 * 121.63571 * 179.97438 * 20 19 17 22 22 C 1.38555 * 120.90812 * 0.02562 * 21 20 19 23 23 C 1.50706 * 120.32728 * 179.97438 * 22 21 20 24 24 O 1.42892 * 109.47572 * 119.99716 * 23 22 21 25 25 Si 1.86299 * 109.46939 * 359.97438 * 23 22 21 26 26 C 1.38623 * 119.35206 * 359.97438 * 22 21 20 27 27 C 1.38587 * 118.49019 * 359.75691 * 26 22 21 28 28 C 1.53779 * 87.08402 * 25.43458 * 13 12 10 29 29 H 1.08993 * 109.47229 * 299.99904 * 1 2 3 30 30 H 1.08996 * 109.47179 * 60.00293 * 1 2 3 31 31 H 1.09000 * 109.46881 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47116 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46582 * 299.99567 * 3 2 1 34 34 H 1.08994 * 109.47448 * 59.99324 * 3 2 1 35 35 H 1.09000 * 109.47005 * 299.99802 * 4 2 1 36 36 H 1.09007 * 109.47383 * 59.99708 * 4 2 1 37 37 H 1.09007 * 109.47514 * 179.97438 * 4 2 1 38 38 H 0.97004 * 119.99934 * 359.97438 * 8 6 5 39 39 H 1.08996 * 109.47072 * 59.99516 * 9 8 6 40 40 H 1.09007 * 109.46579 * 299.99681 * 9 8 6 41 41 H 1.09002 * 113.61478 * 203.66611 * 12 10 9 42 42 H 1.09004 * 113.61162 * 334.56789 * 12 10 9 43 43 H 1.08996 * 109.47332 * 207.46465 * 15 13 12 44 44 H 1.08996 * 109.47070 * 327.47082 * 15 13 12 45 45 H 0.96996 * 120.00465 * 359.97438 * 16 15 13 46 46 H 1.08002 * 119.54546 * 179.97438 * 21 20 19 47 47 H 1.09004 * 109.47176 * 240.00094 * 23 22 21 48 48 H 0.96710 * 113.99979 * 300.00299 * 24 23 22 49 49 H 1.48505 * 110.00039 * 58.68241 * 25 23 22 50 50 H 1.48498 * 110.00110 * 179.97438 * 25 23 22 51 51 H 1.08005 * 120.75675 * 180.02562 * 26 22 21 52 52 H 1.08001 * 120.47705 * 180.26270 * 27 26 22 53 53 H 1.08997 * 113.61646 * 220.02209 * 28 13 12 54 54 H 1.09000 * 113.61527 * 89.11480 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3385 7 8 0.9510 -2.5094 0.5041 8 7 2.0673 -2.6652 2.4173 9 6 1.6733 -4.0664 2.5839 10 6 2.2724 -4.6139 3.8808 11 9 3.6079 -4.2399 4.0642 12 6 1.3899 -4.3729 5.1170 13 6 0.7141 -5.7172 4.7991 14 1 -0.1388 -5.6287 4.1261 15 6 0.4077 -6.5597 6.0390 16 7 -0.9051 -6.1859 6.5711 17 6 -1.3868 -6.8006 7.6696 18 8 -0.7325 -7.6652 8.2183 19 6 -2.7148 -6.4230 8.2076 20 7 -3.4250 -5.4783 7.6036 21 6 -4.6079 -5.1141 8.0483 22 6 -5.1593 -5.7075 9.1723 23 6 -6.5156 -5.2795 9.6709 24 8 -7.4033 -6.3992 9.6574 25 14 -7.1889 -3.9393 8.5659 26 6 -4.4513 -6.6988 9.8339 27 6 -3.2099 -7.0664 9.3396 28 6 2.0191 -6.1162 4.0904 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1393 37 1 3.1301 -0.7209 -1.2494 38 1 2.6269 -2.2362 3.0835 39 1 2.0397 -4.6497 1.7393 40 1 0.5863 -4.1352 2.6288 41 1 1.9438 -4.3739 6.0558 42 1 0.7244 -3.5154 5.0179 43 1 0.4030 -7.6156 5.7687 44 1 1.1709 -6.3819 6.7967 45 1 -1.4272 -5.4955 6.1334 46 1 -5.1566 -4.3411 7.5307 47 1 -6.4253 -4.8997 10.6886 48 1 -7.5311 -6.7893 8.7817 49 1 -7.2867 -4.4340 7.1691 50 1 -8.5264 -3.5089 9.0465 51 1 -4.8598 -7.1769 10.7120 52 1 -2.6326 -7.8380 9.8274 53 1 1.8616 -6.6660 3.1625 54 1 2.7450 -6.5938 4.7485 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500038_13287726.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:29:32 Heat of formation + Delta-G solvation = -133.414946 kcal Electronic energy + Delta-G solvation = -36725.099782 eV Core-core repulsion = 31579.075247 eV Total energy + Delta-G solvation = -5146.024535 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.194 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -48.73927 -41.89981 -41.83364 -40.61620 -39.78858 -38.38067 -38.01240 -36.12684 -35.49845 -34.75301 -33.79214 -32.99968 -30.22503 -28.36795 -28.31352 -28.21312 -27.08318 -26.84667 -25.01441 -23.95774 -23.31123 -22.84681 -21.86733 -21.28167 -20.28092 -19.36456 -19.08700 -18.68436 -18.04255 -17.75656 -17.46173 -17.15820 -16.86685 -16.80880 -16.62913 -16.49453 -16.35396 -16.17908 -16.05976 -15.78429 -15.45753 -15.32884 -15.17757 -14.92474 -14.64214 -14.45691 -14.37565 -14.30159 -14.21810 -13.79838 -13.48901 -13.45645 -13.37482 -13.20958 -13.09750 -12.92021 -12.87582 -12.64060 -12.50394 -12.38146 -12.29933 -12.13689 -12.06295 -11.64943 -11.43195 -11.41071 -11.29570 -11.15792 -11.09577 -10.70339 -10.66371 -10.40037 -10.34751 -10.08917 -4.92953 -0.59871 0.08044 1.06538 1.24098 1.54661 1.59719 1.69379 1.94272 1.97303 2.66284 2.91706 2.96622 3.08958 3.19326 3.26248 3.32504 3.43915 3.49858 3.57701 3.71491 3.73581 3.79139 3.79475 3.93716 3.93988 4.06324 4.13653 4.26140 4.35725 4.45020 4.48284 4.56315 4.58500 4.60329 4.61552 4.69089 4.72622 4.74059 4.76623 4.77711 4.84856 4.87441 4.88127 4.93250 4.96972 4.99033 5.06062 5.18834 5.25666 5.27072 5.32845 5.36896 5.39952 5.53293 6.26257 6.26277 6.41823 6.61123 7.03741 7.24885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.647 3.353 7 O -0.589 6.589 8 N -0.703 5.703 9 C 0.138 3.862 10 C 0.078 3.922 11 F -0.208 7.208 12 C -0.144 4.144 13 C -0.110 4.110 14 H 0.123 0.877 15 C 0.130 3.870 16 N -0.697 5.697 17 C 0.567 3.433 18 O -0.568 6.568 19 C 0.064 3.936 20 N -0.458 5.458 21 C 0.101 3.899 22 C -0.140 4.140 23 C -0.078 4.078 24 O -0.544 6.544 25 Si 0.766 3.234 26 C -0.053 4.053 27 C -0.117 4.117 28 C -0.134 4.134 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.415 0.585 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.420 0.580 46 H 0.187 0.813 47 H 0.137 0.863 48 H 0.388 0.612 49 H -0.275 1.275 50 H -0.301 1.301 51 H 0.160 0.840 52 H 0.148 0.852 53 H 0.101 0.899 54 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.838 4.509 -0.091 4.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.401 3.599 7 O -0.480 6.480 8 N -0.363 5.363 9 C 0.015 3.985 10 C 0.060 3.940 11 F -0.189 7.189 12 C -0.182 4.182 13 C -0.128 4.128 14 H 0.141 0.859 15 C 0.007 3.993 16 N -0.348 5.348 17 C 0.352 3.648 18 O -0.447 6.447 19 C -0.074 4.074 20 N -0.169 5.169 21 C -0.059 4.059 22 C -0.143 4.143 23 C -0.188 4.188 24 O -0.352 6.352 25 Si 0.670 3.330 26 C -0.079 4.079 27 C -0.138 4.138 28 C -0.172 4.172 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.252 0.748 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.258 0.742 46 H 0.203 0.797 47 H 0.155 0.845 48 H 0.238 0.762 49 H -0.202 1.202 50 H -0.228 1.228 51 H 0.178 0.822 52 H 0.166 0.834 53 H 0.120 0.880 54 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.914 4.465 -0.855 4.932 hybrid contribution -0.436 -1.273 0.584 1.467 sum -2.350 3.192 -0.271 3.973 Atomic orbital electron populations 1.22469 0.93700 1.03854 1.03618 1.22382 0.94705 0.92500 0.81354 1.21900 1.02387 0.90947 1.04322 1.22485 1.01563 1.02329 0.97432 1.86320 1.71546 1.23188 1.47373 1.18199 0.78698 0.80856 0.82160 1.90916 1.42100 1.70958 1.44008 1.44498 1.55603 1.12525 1.23679 1.21699 1.01551 0.79152 0.96071 1.22661 0.77293 0.98076 0.96002 1.92853 1.36993 1.92831 1.96193 1.23788 0.98158 0.99002 0.97254 1.22612 0.98483 0.95088 0.96651 0.85901 1.21430 0.83584 0.99429 0.94900 1.45774 1.20513 1.40611 1.27938 1.18074 0.84703 0.81177 0.80809 1.90800 1.59918 1.33319 1.60671 1.21105 0.95137 0.95893 0.95240 1.67515 1.07198 1.11836 1.30360 1.23006 0.91210 0.98272 0.93371 1.21681 0.98507 0.97557 0.96522 1.25212 0.86600 0.96122 1.10821 1.86614 1.65779 1.46626 1.36205 0.94135 0.81920 0.81830 0.75095 1.21724 0.92206 0.94590 0.99366 1.22280 0.96530 0.99585 0.95356 1.23600 0.97304 0.93309 1.03015 0.91766 0.89460 0.91551 0.91369 0.88234 0.91084 0.91658 0.89371 0.92142 0.74802 0.90067 0.87737 0.88218 0.88713 0.90995 0.91268 0.74163 0.79712 0.84508 0.76227 1.20161 1.22840 0.82242 0.83422 0.88000 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.33 8.37 71.98 0.60 0.27 16 2 C 0.13 0.29 1.13 -10.80 -0.01 0.28 16 3 C -0.14 0.34 8.85 71.98 0.64 0.97 16 4 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 5 O -0.37 -1.91 9.94 -55.49 -0.55 -2.46 16 6 C 0.65 3.77 8.06 129.79 1.05 4.82 16 7 O -0.59 -5.99 11.88 19.79 0.24 -5.75 16 8 N -0.70 -0.23 5.46 -590.85 -3.22 -3.45 16 9 C 0.14 -0.44 5.27 86.38 0.45 0.02 16 10 C 0.08 -0.38 1.91 -10.27 -0.02 -0.40 16 11 F -0.21 -0.20 16.61 44.97 0.75 0.55 16 12 C -0.14 1.03 7.06 31.12 0.22 1.25 16 13 C -0.11 0.90 3.40 -10.27 -0.03 0.87 16 14 H 0.12 -1.31 7.72 -2.38 -0.02 -1.33 16 15 C 0.13 -0.44 5.51 86.38 0.48 0.04 16 16 N -0.70 0.79 5.55 -465.64 -2.58 -1.80 16 17 C 0.57 2.93 7.81 86.88 0.68 3.61 16 18 O -0.57 -6.82 16.32 -3.77 -0.06 -6.88 16 19 C 0.06 0.18 6.75 41.91 0.28 0.47 16 20 N -0.46 -0.03 9.54 -184.91 -1.76 -1.79 16 21 C 0.10 -0.37 9.84 84.82 0.83 0.46 16 22 C -0.14 0.57 5.40 -19.69 -0.11 0.46 16 23 C -0.08 0.45 2.83 71.24 0.20 0.65 16 24 O -0.54 1.16 12.78 -148.98 -1.90 -0.74 16 25 Si 0.77 -5.02 29.82 68.60 2.05 -2.98 16 26 C -0.05 0.12 9.76 22.45 0.22 0.34 16 27 C -0.12 -0.16 9.63 22.61 0.22 0.05 16 28 C -0.13 0.98 7.12 31.12 0.22 1.20 16 29 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.07 0.44 5.88 -2.39 -0.01 0.43 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.10 -0.58 8.14 -2.38 -0.02 -0.60 16 34 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 35 H 0.06 0.50 5.88 -2.39 -0.01 0.49 16 36 H 0.09 -0.07 8.14 -2.38 -0.02 -0.09 16 37 H 0.06 0.15 8.14 -2.38 -0.02 0.14 16 38 H 0.42 -0.70 8.14 -92.70 -0.75 -1.46 16 39 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.10 -0.54 7.39 -2.38 -0.02 -0.56 16 41 H 0.10 -0.58 7.90 -2.39 -0.02 -0.60 16 42 H 0.09 -0.79 8.10 -2.39 -0.02 -0.81 16 43 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.07 -0.11 7.85 -2.39 -0.02 -0.12 16 45 H 0.42 -1.90 7.80 -92.71 -0.72 -2.62 16 46 H 0.19 -1.64 4.89 -2.91 -0.01 -1.66 16 47 H 0.14 -1.07 7.96 -2.38 -0.02 -1.09 16 48 H 0.39 -2.89 8.70 -74.05 -0.64 -3.53 16 49 H -0.28 0.84 7.11 99.48 0.71 1.54 16 50 H -0.30 -0.58 7.11 99.48 0.71 0.13 16 51 H 0.16 -0.80 8.06 -2.91 -0.02 -0.83 16 52 H 0.15 0.26 7.64 -2.91 -0.02 0.24 16 53 H 0.10 -0.92 8.10 -2.39 -0.02 -0.94 16 54 H 0.11 -0.71 8.10 -2.39 -0.02 -0.73 16 Total: 0.00 -22.99 442.58 -1.66 -24.64 By element: Atomic # 1 Polarization: -13.68 SS G_CDS: -1.12 Total: -14.80 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 6.52 Total: 15.46 kcal Atomic # 7 Polarization: 0.53 SS G_CDS: -7.57 Total: -7.04 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -2.28 Total: -15.84 kcal Atomic # 9 Polarization: -0.20 SS G_CDS: 0.75 Total: 0.55 kcal Atomic # 14 Polarization: -5.02 SS G_CDS: 2.05 Total: -2.98 kcal Total: -22.99 -1.66 -24.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500038_13287726.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.771 kcal (2) G-P(sol) polarization free energy of solvation -22.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds