Wall clock time and date at job start Sun Mar 7 2021 06:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47128 * 2 1 4 4 C 1.53001 * 109.47292 * 239.99735 * 2 1 3 5 5 O 1.45199 * 109.46976 * 119.99681 * 2 1 3 6 6 C 1.34636 * 116.99782 * 59.99917 * 5 2 1 7 7 O 1.21503 * 120.00284 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99638 * 179.97438 * 6 5 2 9 9 C 1.46498 * 119.99785 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47356 * 179.97438 * 9 8 6 11 11 F 1.39899 * 112.84726 * 316.20220 * 10 9 8 12 12 C 1.53788 * 113.68836 * 87.46394 * 10 9 8 13 13 C 1.53783 * 87.07963 * 139.99765 * 12 10 9 14 14 H 1.08999 * 113.68797 * 220.01497 * 13 12 10 15 15 C 1.52995 * 113.61720 * 89.11494 * 13 12 10 16 16 N 1.46503 * 109.47013 * 87.50304 * 15 13 12 17 17 C 1.34774 * 120.00332 * 179.97438 * 16 15 13 18 18 O 1.21613 * 119.99822 * 0.02562 * 17 16 15 19 19 C 1.47370 * 120.00373 * 179.97438 * 17 16 15 20 20 C 1.36423 * 127.19169 * 0.02562 * 19 17 16 21 21 O 1.33650 * 108.39618 * 179.73600 * 20 19 17 22 22 C 1.34216 * 110.91076 * 0.44358 * 21 20 19 23 23 C 1.50699 * 125.43899 * 179.81244 * 22 21 20 24 24 O 1.42903 * 109.47184 * 244.70157 * 23 22 21 25 25 Si 1.86304 * 109.47202 * 4.69757 * 23 22 21 26 26 C 1.34176 * 109.12341 * 359.55369 * 22 21 20 27 27 C 1.53777 * 113.61703 * 185.00034 * 10 9 8 28 28 H 1.08993 * 109.47651 * 300.00709 * 1 2 3 29 29 H 1.09007 * 109.47209 * 60.00364 * 1 2 3 30 30 H 1.08999 * 109.47340 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47062 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46595 * 299.99591 * 3 2 1 33 33 H 1.08998 * 109.47239 * 59.99863 * 3 2 1 34 34 H 1.08994 * 109.46959 * 300.00259 * 4 2 1 35 35 H 1.09003 * 109.46847 * 60.00532 * 4 2 1 36 36 H 1.09001 * 109.47001 * 180.02562 * 4 2 1 37 37 H 0.97002 * 120.00078 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.47177 * 60.00023 * 9 8 6 39 39 H 1.09001 * 109.47477 * 300.00268 * 9 8 6 40 40 H 1.08994 * 113.61457 * 25.44622 * 12 10 9 41 41 H 1.09004 * 113.61290 * 254.54166 * 12 10 9 42 42 H 1.08997 * 109.47105 * 327.50647 * 15 13 12 43 43 H 1.08996 * 109.47166 * 207.50404 * 15 13 12 44 44 H 0.97008 * 119.99604 * 359.97438 * 16 15 13 45 45 H 1.07994 * 125.79969 * 0.03852 * 20 19 17 46 46 H 1.09002 * 109.46959 * 124.69901 * 23 22 21 47 47 H 0.96700 * 114.00234 * 59.99791 * 24 23 22 48 48 H 1.48499 * 109.99644 * 58.68223 * 25 23 22 49 49 H 1.48492 * 110.00078 * 179.97438 * 25 23 22 50 50 H 1.07999 * 127.02534 * 180.22352 * 26 22 21 51 51 H 1.08997 * 113.61187 * 105.39012 * 27 10 9 52 52 H 1.08998 * 113.61490 * 334.48753 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9722 1.3384 7 8 0.9515 -2.5096 0.5037 8 7 2.0679 -2.6656 2.4168 9 6 1.6747 -4.0670 2.5828 10 6 2.2757 -4.6153 3.8786 11 9 3.6116 -4.2410 4.0588 12 6 1.3964 -4.3758 5.1173 13 6 1.7875 -5.7920 5.5716 14 1 0.9648 -6.3521 6.0161 15 6 3.0611 -5.8342 6.4182 16 7 2.7176 -5.6296 7.8276 17 6 3.6868 -5.6278 8.7641 18 8 4.8466 -5.7956 8.4392 19 6 3.3413 -5.4214 10.1818 20 6 2.0984 -5.2202 10.7069 21 8 2.2170 -5.0827 12.0310 22 6 3.5014 -5.1759 12.4091 23 6 4.0058 -5.0648 13.8248 24 8 4.8329 -3.9058 13.9463 25 14 2.5592 -4.9202 14.9899 26 6 4.2641 -5.3893 11.3260 27 6 2.0234 -6.1178 4.0872 28 1 -0.3634 0.5139 0.8898 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7217 -1.2489 37 1 2.6275 -2.2366 3.0830 38 1 2.0412 -4.6498 1.7377 39 1 0.5879 -4.1366 2.6280 40 1 0.3366 -4.2684 4.8863 41 1 1.7698 -3.5885 5.7722 42 1 3.7406 -5.0469 6.0919 43 1 3.5445 -6.8038 6.2991 44 1 1.7925 -5.4954 8.0868 45 1 1.1749 -5.1835 10.1481 46 1 4.5860 -5.9531 14.0745 47 1 4.3810 -3.0765 13.7385 48 1 1.6743 -6.1045 14.8503 49 1 3.0433 -4.8106 16.3894 50 1 5.3368 -5.5119 11.2999 51 1 2.9029 -6.7369 3.9106 52 1 1.1350 -6.4867 3.5746 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500038_13456056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:30:51 Heat of formation + Delta-G solvation = -153.433966 kcal Electronic energy + Delta-G solvation = -35381.646513 eV Core-core repulsion = 30265.261367 eV Total energy + Delta-G solvation = -5116.385146 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.183 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -48.91909 -43.71989 -41.84040 -40.77190 -39.59298 -38.41358 -38.00238 -36.14719 -35.46231 -34.79361 -33.94568 -31.95632 -30.18308 -28.38455 -28.32287 -27.67796 -26.98607 -26.51631 -24.58276 -23.57567 -22.69946 -22.31548 -21.33793 -21.01116 -20.14561 -19.39730 -19.19906 -17.96228 -17.81656 -17.52737 -17.43919 -17.39113 -17.29176 -16.93628 -16.69438 -16.45150 -16.12421 -16.05624 -15.71734 -15.66596 -15.46477 -15.21992 -14.78150 -14.76195 -14.44308 -14.33419 -14.24410 -14.04918 -13.99616 -13.79166 -13.55355 -13.37666 -13.15264 -13.04814 -12.93618 -12.89181 -12.82524 -12.53440 -12.41621 -12.31745 -12.21571 -12.04222 -11.43402 -11.41933 -11.37506 -11.19037 -11.11007 -10.97605 -10.62794 -10.33189 -10.21783 -9.79118 -4.97594 0.26256 0.80629 1.08306 1.18235 1.52021 1.68766 1.81288 1.94514 2.01719 2.23390 2.96689 3.12725 3.22246 3.27666 3.30553 3.43543 3.49353 3.58555 3.61290 3.72003 3.77533 3.92393 3.94696 4.00823 4.27610 4.32898 4.39867 4.41625 4.49645 4.50096 4.56169 4.59896 4.61065 4.70890 4.73713 4.74823 4.76067 4.83548 4.85737 4.89170 4.90868 4.96089 4.99710 5.07993 5.10822 5.17448 5.25302 5.28624 5.32234 5.35149 5.52548 5.83081 6.25772 6.45906 6.62757 7.13478 7.24391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.703 5.703 9 C 0.131 3.869 10 C 0.068 3.932 11 F -0.201 7.201 12 C -0.139 4.139 13 C -0.113 4.113 14 H 0.127 0.873 15 C 0.129 3.871 16 N -0.704 5.704 17 C 0.583 3.417 18 O -0.591 6.591 19 C -0.272 4.272 20 C 0.070 3.930 21 O -0.162 6.162 22 C -0.052 4.052 23 C -0.039 4.039 24 O -0.546 6.546 25 Si 0.802 3.198 26 C -0.155 4.155 27 C -0.134 4.134 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.414 0.586 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.132 0.868 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.419 0.581 45 H 0.267 0.733 46 H 0.129 0.871 47 H 0.400 0.600 48 H -0.287 1.287 49 H -0.286 1.286 50 H 0.140 0.860 51 H 0.081 0.919 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 2.710 1.234 10.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.090 3.910 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.286 6.286 6 C 0.399 3.601 7 O -0.481 6.481 8 N -0.363 5.363 9 C 0.008 3.992 10 C 0.050 3.950 11 F -0.181 7.181 12 C -0.177 4.177 13 C -0.131 4.131 14 H 0.145 0.855 15 C 0.005 3.995 16 N -0.357 5.357 17 C 0.372 3.628 18 O -0.473 6.473 19 C -0.276 4.276 20 C 0.000 4.000 21 O -0.057 6.057 22 C -0.100 4.100 23 C -0.148 4.148 24 O -0.355 6.355 25 Si 0.705 3.295 26 C -0.175 4.175 27 C -0.173 4.173 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.150 0.850 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.257 0.743 45 H 0.283 0.717 46 H 0.146 0.854 47 H 0.251 0.749 48 H -0.213 1.213 49 H -0.212 1.212 50 H 0.158 0.842 51 H 0.099 0.901 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.408 1.673 1.569 9.683 hybrid contribution 1.356 -0.361 -0.421 1.465 sum -8.052 1.312 1.148 8.239 Atomic orbital electron populations 1.22464 0.93630 1.03847 1.03637 1.22385 0.94756 0.92495 0.81356 1.21900 1.02340 0.90972 1.04342 1.22483 1.01506 1.02332 0.97482 1.86320 1.71568 1.23308 1.47379 1.18246 0.78735 0.80830 0.82240 1.90907 1.42239 1.70950 1.43989 1.44580 1.55491 1.12699 1.23570 1.21943 1.01650 0.78776 0.96846 1.22470 0.77940 0.98679 0.95947 1.92848 1.36504 1.92603 1.96156 1.23781 1.01700 0.97533 0.94666 1.22452 0.97384 0.98208 0.95084 0.85520 1.21272 0.97250 1.01537 0.79404 1.45566 1.10476 1.73097 1.06557 1.17557 0.84787 0.75573 0.84845 1.90801 1.21651 1.51883 1.82924 1.21464 0.95324 1.17165 0.93654 1.25364 0.99439 0.95069 0.80128 1.83713 1.27856 1.69844 1.24308 1.22745 0.81099 1.08215 0.97934 1.24719 1.04576 0.92363 0.93119 1.86546 1.40999 1.16854 1.91072 0.93168 0.75042 0.86742 0.74509 1.22569 1.00447 1.03807 0.90695 1.23632 1.05376 0.92644 0.95635 0.91757 0.89418 0.91558 0.91460 0.88183 0.91075 0.91680 0.89302 0.92248 0.74993 0.90809 0.87487 0.85028 0.89991 0.92298 0.92244 0.74344 0.71708 0.85423 0.74897 1.21347 1.21247 0.84187 0.90063 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.38 8.37 71.98 0.60 0.22 16 2 C 0.13 0.36 1.13 -10.79 -0.01 0.35 16 3 C -0.14 0.26 8.85 71.98 0.64 0.90 16 4 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 5 O -0.37 -2.19 9.94 -55.46 -0.55 -2.74 16 6 C 0.65 4.15 8.06 129.79 1.05 5.19 16 7 O -0.59 -6.31 11.88 19.83 0.24 -6.08 16 8 N -0.70 -0.56 5.45 -590.85 -3.22 -3.78 16 9 C 0.13 -0.44 5.43 86.38 0.47 0.03 16 10 C 0.07 -0.37 1.73 -10.27 -0.02 -0.39 16 11 F -0.20 -0.38 14.79 44.97 0.67 0.28 16 12 C -0.14 1.45 7.07 31.12 0.22 1.67 16 13 C -0.11 1.13 3.94 -10.27 -0.04 1.09 16 14 H 0.13 -1.91 8.14 -2.39 -0.02 -1.93 16 15 C 0.13 -0.24 5.28 86.38 0.46 0.21 16 16 N -0.70 2.41 5.55 -466.44 -2.59 -0.17 16 17 C 0.58 3.54 7.81 86.65 0.68 4.22 16 18 O -0.59 -10.31 16.98 -4.07 -0.07 -10.38 16 19 C -0.27 -0.59 6.31 -18.99 -0.12 -0.71 16 20 C 0.07 -0.49 11.61 67.40 0.78 0.29 16 21 O -0.16 0.58 8.90 4.48 0.04 0.62 16 22 C -0.05 -0.02 6.18 24.76 0.15 0.13 16 23 C -0.04 0.05 2.97 71.24 0.21 0.26 16 24 O -0.55 0.26 12.88 -148.98 -1.92 -1.66 16 25 Si 0.80 -3.18 32.09 68.60 2.20 -0.98 16 26 C -0.16 -0.86 10.90 23.65 0.26 -0.60 16 27 C -0.13 1.20 7.13 31.12 0.22 1.43 16 28 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.09 -0.11 8.14 -2.38 -0.02 -0.13 16 30 H 0.07 0.46 5.88 -2.39 -0.01 0.44 16 31 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 32 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 35 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.41 -0.37 8.14 -92.71 -0.75 -1.13 16 38 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.11 -0.66 7.85 -2.39 -0.02 -0.68 16 40 H 0.13 -1.93 7.90 -2.39 -0.02 -1.94 16 41 H 0.08 -0.69 8.10 -2.39 -0.02 -0.71 16 42 H 0.06 0.22 6.31 -2.39 -0.02 0.20 16 43 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.42 -5.24 7.44 -92.70 -0.69 -5.93 16 45 H 0.27 -5.09 7.47 -2.91 -0.02 -5.11 16 46 H 0.13 -0.11 7.96 -2.39 -0.02 -0.13 16 47 H 0.40 -3.59 8.70 -74.06 -0.64 -4.24 16 48 H -0.29 -0.47 7.11 99.48 0.71 0.24 16 49 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 50 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 51 H 0.08 -0.50 8.10 -2.39 -0.02 -0.52 16 52 H 0.14 -1.85 8.10 -2.39 -0.02 -1.87 16 Total: 0.00 -32.81 431.15 -0.13 -32.95 By element: Atomic # 1 Polarization: -21.26 SS G_CDS: -1.07 Total: -22.33 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.15 Total: 14.28 kcal Atomic # 7 Polarization: 1.85 SS G_CDS: -5.81 Total: -3.96 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -2.26 Total: -20.24 kcal Atomic # 9 Polarization: -0.38 SS G_CDS: 0.67 Total: 0.28 kcal Atomic # 14 Polarization: -3.18 SS G_CDS: 2.20 Total: -0.98 kcal Total: -32.81 -0.13 -32.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500038_13456056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.488 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds