Wall clock time and date at job start Sun Mar 7 2021 08:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 5 5 C 1.38236 * 119.99784 * 244.73145 * 4 2 1 6 6 C 1.38246 * 119.99674 * 179.74632 * 5 4 2 7 7 C 1.38234 * 119.99738 * 0.54527 * 6 5 4 8 8 C 1.50703 * 119.99807 * 179.72629 * 7 6 5 9 9 C 1.50700 * 109.46855 * 269.97890 * 8 7 6 10 10 O 1.21279 * 120.00542 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99736 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99951 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47083 * 180.02562 * 12 11 9 14 14 F 1.39900 * 112.84919 * 316.19823 * 13 12 11 15 15 C 1.53784 * 113.61098 * 87.50516 * 13 12 11 16 16 C 1.53783 * 87.07981 * 139.98145 * 15 13 12 17 17 H 1.08998 * 113.61669 * 89.10905 * 16 15 13 18 18 C 1.53001 * 113.61236 * 220.01870 * 16 15 13 19 19 O 1.42895 * 109.47089 * 272.49427 * 18 16 15 20 20 C 1.53775 * 113.61124 * 185.00014 * 13 12 11 21 21 C 1.38231 * 120.00035 * 359.70782 * 7 6 5 22 22 C 1.38234 * 120.00585 * 0.02562 * 21 7 6 23 23 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 24 24 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 25 25 H 1.48504 * 110.00018 * 298.67819 * 3 2 1 26 26 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 27 27 H 1.07991 * 120.00435 * 359.97438 * 5 4 2 28 28 H 1.07994 * 120.00033 * 180.26807 * 6 5 4 29 29 H 1.09000 * 109.47027 * 29.97482 * 8 7 6 30 30 H 1.08995 * 109.46962 * 149.97985 * 8 7 6 31 31 H 0.97000 * 120.00484 * 0.02562 * 11 9 8 32 32 H 1.09000 * 109.47512 * 300.00138 * 12 11 9 33 33 H 1.08995 * 109.47019 * 60.00565 * 12 11 9 34 34 H 1.08999 * 113.61025 * 254.52639 * 15 13 12 35 35 H 1.08999 * 113.61513 * 25.43283 * 15 13 12 36 36 H 1.08999 * 109.46940 * 32.49729 * 18 16 15 37 37 H 1.09000 * 109.46933 * 152.49607 * 18 16 15 38 38 H 0.96698 * 114.00298 * 179.97438 * 19 18 16 39 39 H 1.08999 * 113.62015 * 334.56808 * 20 13 12 40 40 H 1.09007 * 113.61426 * 105.47660 * 20 13 12 41 41 H 1.08005 * 119.99929 * 179.97438 * 21 7 6 42 42 H 1.07997 * 120.00160 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6435 -0.0134 2.1886 6 6 3.0998 -0.6639 3.3199 7 6 2.8535 -2.0137 3.4876 8 6 3.3562 -2.7242 4.7179 9 6 4.7376 -3.2664 4.4556 10 8 5.2621 -3.0934 3.3758 11 7 5.3902 -3.9436 5.4210 12 6 6.7329 -4.4712 5.1659 13 6 7.2434 -5.1924 6.4150 14 9 6.9858 -4.4850 7.5941 15 6 6.8349 -6.6736 6.4812 16 6 8.2461 -6.9572 7.0224 17 1 8.3192 -6.8897 8.1079 18 6 8.8719 -8.2358 6.4617 19 8 8.4872 -9.3490 7.2708 20 6 8.6968 -5.6800 6.2940 21 6 2.1459 -2.7118 2.5270 22 6 1.6849 -2.0602 1.3983 23 1 -0.3933 0.4417 -0.7650 24 1 1.7924 -0.5139 -0.8900 25 1 1.5879 2.4585 -1.2243 26 1 1.5614 2.4679 1.2084 27 1 2.8403 1.0400 2.0551 28 1 3.6524 -0.1184 4.0705 29 1 3.3932 -2.0238 5.5523 30 1 2.6837 -3.5462 4.9630 31 1 4.9707 -4.0823 6.2845 32 1 6.6956 -5.1721 4.3319 33 1 7.4055 -3.6495 4.9201 34 1 6.0422 -6.8760 7.2015 35 1 6.6443 -7.1180 5.5044 36 1 8.5254 -8.3921 5.4401 37 1 9.9578 -8.1412 6.4666 38 1 8.8483 -10.1952 6.9731 39 1 9.0153 -5.8529 5.2661 40 1 9.4073 -5.0804 6.8632 41 1 1.9539 -3.7665 2.6578 42 1 1.1324 -2.6057 0.6477 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_12335836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:56:49 Heat of formation + Delta-G solvation = -116.925957 kcal Electronic energy + Delta-G solvation = -24847.231187 eV Core-core repulsion = 20901.832298 eV Total energy + Delta-G solvation = -3945.398888 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.86771 -41.16069 -40.19114 -39.68760 -37.79283 -37.17967 -35.56284 -34.18053 -31.94689 -30.86425 -29.39370 -27.20282 -26.93934 -25.40550 -23.82294 -22.39038 -22.03541 -21.32632 -20.62959 -18.58511 -18.38769 -18.27845 -17.74202 -17.23730 -17.10237 -16.76931 -16.48799 -16.35520 -16.12103 -15.95526 -15.49622 -15.28586 -14.96702 -14.71155 -14.56642 -14.44038 -14.22794 -13.97976 -13.78791 -13.56148 -13.41363 -13.20737 -13.03282 -12.88570 -12.35607 -12.26155 -11.96339 -11.87743 -11.73774 -11.50175 -11.31995 -10.99542 -10.80735 -10.51371 -10.17905 -9.87702 -9.61748 -4.94665 0.22896 0.45330 1.27300 1.55890 1.61247 1.89701 2.07097 2.72136 3.05272 3.13315 3.18392 3.36371 3.39611 3.54967 3.63742 3.82797 3.84616 3.90275 4.02767 4.05849 4.25788 4.29904 4.36188 4.44202 4.46599 4.49212 4.58373 4.60482 4.61547 4.64444 4.71414 4.72078 4.85648 4.92454 4.99081 5.01588 5.08365 5.29930 5.37228 5.40603 5.53968 5.58005 6.00646 6.45463 6.56409 6.88648 7.19463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.087 4.087 3 Si 0.760 3.240 4 C -0.090 4.090 5 C -0.127 4.127 6 C -0.111 4.111 7 C -0.072 4.072 8 C -0.099 4.099 9 C 0.517 3.483 10 O -0.572 6.572 11 N -0.722 5.722 12 C 0.115 3.885 13 C 0.081 3.919 14 F -0.198 7.198 15 C -0.141 4.141 16 C -0.115 4.115 17 H 0.085 0.915 18 C 0.083 3.917 19 O -0.599 6.599 20 C -0.135 4.135 21 C -0.115 4.115 22 C -0.108 4.108 23 H 0.394 0.606 24 H 0.090 0.910 25 H -0.283 1.283 26 H -0.296 1.296 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.415 0.585 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.397 0.603 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.136 0.864 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.077 -2.960 0.081 4.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.195 4.195 3 Si 0.665 3.335 4 C -0.090 4.090 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.072 4.072 8 C -0.138 4.138 9 C 0.304 3.696 10 O -0.451 6.451 11 N -0.376 5.376 12 C -0.010 4.010 13 C 0.062 3.938 14 F -0.178 7.178 15 C -0.179 4.179 16 C -0.133 4.133 17 H 0.103 0.897 18 C 0.006 3.994 19 O -0.408 6.408 20 C -0.173 4.173 21 C -0.133 4.133 22 C -0.126 4.126 23 H 0.244 0.756 24 H 0.108 0.892 25 H -0.210 1.210 26 H -0.224 1.224 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.251 0.749 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.247 0.753 39 H 0.143 0.857 40 H 0.106 0.894 41 H 0.154 0.846 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.030 -1.846 0.213 3.554 hybrid contribution -1.063 -0.511 -0.265 1.209 sum 1.966 -2.357 -0.052 3.070 Atomic orbital electron populations 1.86543 1.18491 1.80713 1.50982 1.25011 0.84051 1.11940 0.98513 0.94032 0.90648 0.72297 0.76551 1.19488 0.99151 0.94529 0.95873 1.21144 0.99086 1.00024 0.94159 1.21207 0.99316 0.94453 0.97929 1.19559 0.97649 0.93905 0.96120 1.20740 0.92846 1.02765 0.97432 1.20916 0.88007 0.77191 0.83444 1.90741 1.69566 1.58878 1.25898 1.45829 1.17640 1.56718 1.17371 1.21792 0.84013 0.98966 0.96186 1.22135 0.99266 0.91445 0.80929 1.92844 1.95057 1.80353 1.49571 1.23727 0.97917 0.92405 1.03806 1.22495 0.96238 0.93973 1.00606 0.89653 1.22233 0.98500 0.85067 0.93630 1.86440 1.77332 1.19646 1.57343 1.23581 0.94266 0.95546 1.03936 1.21251 0.97920 1.00409 0.93692 1.21124 0.99131 0.94158 0.98169 0.75573 0.89169 1.20985 1.22366 0.84622 0.84126 0.85328 0.85276 0.74875 0.88859 0.90967 0.90424 0.86708 0.91727 0.92360 0.75291 0.85717 0.89371 0.84623 0.85538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.67 12.81 -148.98 -1.91 -4.58 16 2 C -0.09 -0.24 2.79 71.24 0.20 -0.04 16 3 Si 0.76 0.60 29.84 68.60 2.05 2.65 16 4 C -0.09 -0.56 5.38 -19.87 -0.11 -0.67 16 5 C -0.13 -0.63 8.67 22.27 0.19 -0.44 16 6 C -0.11 -0.43 9.70 22.27 0.22 -0.21 16 7 C -0.07 -0.23 4.37 -19.87 -0.09 -0.32 16 8 C -0.10 0.30 5.83 29.10 0.17 0.47 16 9 C 0.52 1.01 7.82 87.66 0.69 1.69 16 10 O -0.57 -6.25 16.03 -3.03 -0.05 -6.30 16 11 N -0.72 1.66 5.45 -463.05 -2.52 -0.87 16 12 C 0.11 -0.26 5.43 86.38 0.47 0.21 16 13 C 0.08 -0.26 1.74 -10.27 -0.02 -0.28 16 14 F -0.20 -0.30 16.58 44.97 0.75 0.45 16 15 C -0.14 0.57 7.08 31.12 0.22 0.79 16 16 C -0.11 0.32 3.99 -10.26 -0.04 0.28 16 17 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 18 C 0.08 -0.35 6.88 71.98 0.50 0.14 16 19 O -0.60 0.21 13.66 -148.98 -2.03 -1.82 16 20 C -0.14 0.74 7.10 31.12 0.22 0.96 16 21 C -0.11 -0.51 9.70 22.27 0.22 -0.29 16 22 C -0.11 -0.67 9.69 22.27 0.22 -0.46 16 23 H 0.39 -1.40 8.74 -74.06 -0.65 -2.05 16 24 H 0.09 -0.06 7.96 -2.39 -0.02 -0.08 16 25 H -0.28 -1.17 7.11 99.48 0.71 -0.46 16 26 H -0.30 -2.21 7.05 99.48 0.70 -1.51 16 27 H 0.14 0.23 4.87 -2.92 -0.01 0.21 16 28 H 0.14 -0.06 8.06 -2.91 -0.02 -0.08 16 29 H 0.13 -0.97 8.09 -2.39 -0.02 -0.99 16 30 H 0.13 -1.02 8.09 -2.39 -0.02 -1.04 16 31 H 0.41 -2.53 8.03 -92.71 -0.74 -3.27 16 32 H 0.09 -0.28 7.84 -2.39 -0.02 -0.30 16 33 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.11 -0.75 7.65 -2.39 -0.02 -0.77 16 36 H 0.06 -0.47 7.84 -2.39 -0.02 -0.49 16 37 H 0.06 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.40 -3.45 9.12 -74.06 -0.68 -4.13 16 39 H 0.12 -1.15 8.06 -2.39 -0.02 -1.17 16 40 H 0.09 -0.42 8.14 -2.38 -0.02 -0.44 16 41 H 0.14 0.07 8.06 -2.91 -0.02 0.05 16 42 H 0.13 0.57 8.06 -2.91 -0.02 0.54 16 Total: 0.00 -23.49 355.88 -1.65 -25.14 By element: Atomic # 1 Polarization: -15.53 SS G_CDS: -0.97 Total: -16.51 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 3.05 Total: 1.83 kcal Atomic # 7 Polarization: 1.66 SS G_CDS: -2.52 Total: -0.87 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -3.99 Total: -12.70 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.75 Total: 0.45 kcal Atomic # 14 Polarization: 0.60 SS G_CDS: 2.05 Total: 2.65 kcal Total: -23.49 -1.65 -25.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_12335836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.785 kcal (2) G-P(sol) polarization free energy of solvation -23.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds