Wall clock time and date at job start Sun Mar 7 2021 08:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34810 * 125.90591 * 2 1 4 4 C 1.40991 * 107.48563 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.25060 * 179.97438 * 4 3 2 6 6 O 1.42900 * 109.47457 * 255.04121 * 5 4 3 7 7 Si 1.86302 * 109.47373 * 15.04712 * 5 4 3 8 8 C 1.34802 * 107.48783 * 0.02562 * 4 3 2 9 9 C 1.50703 * 125.90106 * 179.97438 * 8 4 3 10 10 N 1.36653 * 108.19492 * 0.22805 * 8 4 3 11 11 C 1.39661 * 125.68005 * 179.74120 * 10 8 4 12 12 C 1.40206 * 120.15283 * 269.99918 * 11 10 8 13 13 C 1.47573 * 120.19253 * 359.94963 * 12 11 10 14 14 O 1.21583 * 120.00090 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00078 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00188 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47146 * 180.02562 * 16 15 13 18 18 F 1.39908 * 112.84898 * 316.19434 * 17 16 15 19 19 C 1.53780 * 113.61932 * 87.50035 * 17 16 15 20 20 C 1.53779 * 87.08247 * 139.97926 * 19 17 16 21 21 H 1.09006 * 113.68735 * 89.13342 * 20 19 17 22 22 C 1.53002 * 113.61528 * 220.01933 * 20 19 17 23 23 O 1.42898 * 109.47334 * 272.49785 * 22 20 19 24 24 C 1.53776 * 87.08215 * 334.57032 * 20 19 17 25 25 C 1.39662 * 119.61212 * 179.97438 * 12 11 10 26 26 C 1.37827 * 119.92166 * 359.97438 * 25 12 11 27 27 C 1.38534 * 120.30812 * 359.97438 * 26 25 12 28 28 C 1.38071 * 120.39421 * 359.79420 * 27 26 25 29 29 H 1.08997 * 109.47165 * 89.97329 * 1 2 3 30 30 H 1.09000 * 109.46872 * 209.97302 * 1 2 3 31 31 H 1.08999 * 109.47035 * 329.97264 * 1 2 3 32 32 H 1.08001 * 126.24949 * 0.07653 * 3 2 1 33 33 H 1.09000 * 109.47089 * 135.04539 * 5 4 3 34 34 H 0.96700 * 114.00398 * 180.02562 * 6 5 4 35 35 H 1.48497 * 109.99718 * 178.68051 * 7 5 4 36 36 H 1.48503 * 109.99809 * 299.99346 * 7 5 4 37 37 H 1.09002 * 109.47152 * 90.02389 * 9 8 4 38 38 H 1.09001 * 109.46980 * 330.02490 * 9 8 4 39 39 H 1.09004 * 109.47113 * 210.02471 * 9 8 4 40 40 H 0.96998 * 119.99640 * 0.02562 * 15 13 12 41 41 H 1.09005 * 109.46716 * 300.00252 * 16 15 13 42 42 H 1.08995 * 109.46989 * 59.99836 * 16 15 13 43 43 H 1.08998 * 113.61898 * 254.53177 * 19 17 16 44 44 H 1.09003 * 113.61245 * 25.43186 * 19 17 16 45 45 H 1.08997 * 109.46776 * 32.49841 * 22 20 19 46 46 H 1.09001 * 109.47191 * 152.49871 * 22 20 19 47 47 H 0.96697 * 113.99816 * 179.97438 * 23 22 20 48 48 H 1.08999 * 113.61521 * 270.87813 * 24 20 19 49 49 H 1.08997 * 113.68868 * 139.99144 * 24 20 19 50 50 H 1.08001 * 120.03929 * 179.97438 * 25 12 11 51 51 H 1.07996 * 119.84479 * 180.02562 * 26 25 12 52 52 H 1.07995 * 119.80362 * 180.02562 * 27 26 25 53 53 H 1.07999 * 119.96853 * 180.25380 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0919 0.0000 4 6 3.6353 0.6464 -0.0006 5 6 4.8648 1.5179 -0.0014 6 8 5.4539 1.5094 -1.3032 7 14 4.3908 3.2610 0.4546 8 6 3.6134 -0.7014 -0.0015 9 6 4.8196 -1.6049 -0.0030 10 7 2.3084 -1.1069 -0.0067 11 6 1.8672 -2.4320 -0.0143 12 6 1.6476 -3.0942 -1.2305 13 6 1.8803 -2.3948 -2.5089 14 8 2.2640 -1.2411 -2.5096 15 7 1.6685 -3.0352 -3.6757 16 6 1.9000 -2.3411 -4.9449 17 6 1.5866 -3.2853 -6.1072 18 9 2.0988 -4.5729 -5.9144 19 6 0.1099 -3.2656 -6.5360 20 6 0.6120 -3.3407 -7.9876 21 1 0.7436 -4.3591 -8.3534 22 6 -0.1791 -2.4592 -8.9561 23 8 -1.3039 -3.1873 -9.4527 24 6 1.9139 -2.6925 -7.4879 25 6 1.2069 -4.4194 -1.2249 26 6 0.9914 -5.0673 -0.0276 27 6 1.2104 -4.4102 1.1722 28 6 1.6507 -3.1016 1.1817 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5143 32 1 1.9667 2.1200 0.0012 33 1 5.5821 1.1348 0.7244 34 1 6.2519 2.0505 -1.3774 35 1 5.5992 4.1234 0.4884 36 1 3.4132 3.7948 -0.5275 37 1 5.1108 -1.8237 1.0244 38 1 5.6437 -1.1098 -0.5166 39 1 4.5766 -2.5345 -0.5177 40 1 1.3627 -3.9557 -3.6751 41 1 1.2529 -1.4658 -5.0036 42 1 2.9421 -2.0269 -5.0023 43 1 -0.4481 -4.1473 -6.2208 44 1 -0.4013 -2.3327 -6.2985 45 1 -0.5254 -1.5667 -8.4349 46 1 0.4615 -2.1682 -9.7886 47 1 -1.8523 -2.6886 -10.0736 48 1 1.8959 -1.6029 -7.5107 49 1 2.8130 -3.1106 -7.9406 50 1 1.0351 -4.9360 -2.1577 51 1 0.6510 -6.0922 -0.0247 52 1 1.0393 -4.9257 2.1056 53 1 1.8231 -2.5972 2.1210 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_12335856.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:04 Heat of formation + Delta-G solvation = -47.058293 kcal Electronic energy + Delta-G solvation = -37685.624786 eV Core-core repulsion = 32826.538397 eV Total energy + Delta-G solvation = -4859.086388 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.184 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -48.96778 -42.86112 -41.04874 -39.96500 -39.32750 -37.80227 -37.23771 -35.82204 -34.25174 -33.60643 -32.71626 -30.57531 -30.17207 -30.04764 -27.52184 -27.15539 -26.97776 -24.91779 -24.58381 -23.45404 -22.34410 -21.85710 -20.99950 -20.73274 -20.05288 -19.05645 -18.45272 -18.31826 -17.82609 -17.66285 -17.08740 -16.82727 -16.74786 -16.30537 -16.18879 -16.08017 -15.90026 -15.73802 -15.46058 -15.27963 -15.05682 -14.98857 -14.76834 -14.48466 -14.38156 -14.23474 -14.12999 -13.88499 -13.72694 -13.63210 -13.49474 -13.40004 -13.26473 -13.18733 -13.11688 -12.93940 -12.57142 -12.43979 -12.39059 -12.36510 -11.94920 -11.86920 -11.58167 -11.41360 -11.08569 -10.86253 -10.42260 -10.32655 -10.16641 -10.05646 -9.53666 -8.67187 -4.87352 -0.44413 0.03387 1.18755 1.41973 1.61753 1.70028 1.82939 1.85649 1.96027 2.07005 2.58232 2.95899 3.03064 3.06410 3.27161 3.43291 3.52663 3.61583 3.68846 3.75858 3.78180 3.95886 4.05027 4.16088 4.18527 4.20268 4.23410 4.25988 4.28864 4.36680 4.39642 4.43913 4.51031 4.53416 4.55958 4.58688 4.62537 4.64282 4.65955 4.68887 4.75020 4.77408 4.83474 4.90901 4.94794 4.98538 5.04267 5.14033 5.17876 5.24949 5.27733 5.31364 5.43873 5.62633 6.10575 6.25655 6.26392 6.63231 6.72243 6.84659 7.01247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.033 3.967 3 C -0.207 4.207 4 C -0.170 4.170 5 C -0.050 4.050 6 O -0.561 6.561 7 Si 0.776 3.224 8 C 0.053 3.947 9 C -0.075 4.075 10 N -0.391 5.391 11 C 0.145 3.855 12 C -0.146 4.146 13 C 0.544 3.456 14 O -0.542 6.542 15 N -0.716 5.716 16 C 0.120 3.880 17 C 0.082 3.918 18 F -0.196 7.196 19 C -0.140 4.140 20 C -0.110 4.110 21 H 0.089 0.911 22 C 0.084 3.916 23 O -0.597 6.597 24 C -0.136 4.136 25 C -0.078 4.078 26 C -0.106 4.106 27 C -0.073 4.073 28 C -0.118 4.118 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.138 0.862 33 H 0.080 0.920 34 H 0.386 0.614 35 H -0.284 1.284 36 H -0.308 1.308 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.411 0.589 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.112 0.888 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.398 0.602 48 H 0.121 0.879 49 H 0.089 0.911 50 H 0.152 0.848 51 H 0.169 0.831 52 H 0.168 0.832 53 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -4.292 2.384 5.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.231 4.231 4 C -0.177 4.177 5 C -0.159 4.159 6 O -0.370 6.370 7 Si 0.682 3.318 8 C -0.057 4.057 9 C -0.133 4.133 10 N -0.065 5.065 11 C 0.055 3.945 12 C -0.150 4.150 13 C 0.331 3.669 14 O -0.420 6.420 15 N -0.370 5.370 16 C -0.004 4.004 17 C 0.063 3.937 18 F -0.176 7.176 19 C -0.177 4.177 20 C -0.129 4.129 21 H 0.108 0.892 22 C 0.006 3.994 23 O -0.406 6.406 24 C -0.174 4.174 25 C -0.097 4.097 26 C -0.124 4.124 27 C -0.091 4.091 28 C -0.137 4.137 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.156 0.844 33 H 0.098 0.902 34 H 0.235 0.765 35 H -0.212 1.212 36 H -0.236 1.236 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.249 0.751 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.248 0.752 48 H 0.139 0.861 49 H 0.108 0.892 50 H 0.170 0.830 51 H 0.186 0.814 52 H 0.186 0.814 53 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.504 -3.833 2.381 5.713 hybrid contribution 0.798 0.024 -1.675 1.856 sum -2.706 -3.809 0.706 4.726 Atomic orbital electron populations 1.20287 0.87027 1.04014 1.02076 1.20473 0.93963 0.84835 1.08312 1.20579 0.92391 0.97720 1.12364 1.18591 0.93561 0.92188 1.13321 1.24298 0.94631 1.10300 0.86653 1.86648 1.46332 1.72325 1.31728 0.94005 0.78052 0.71850 0.87851 1.20253 0.84359 0.94019 1.07091 1.20236 0.93314 0.96794 1.02918 1.40977 1.05247 1.02950 1.57371 1.17819 0.99872 0.83478 0.93341 1.20179 1.06613 0.96355 0.91877 1.18492 0.77764 0.86213 0.84420 1.90950 1.45543 1.17779 1.87705 1.45661 1.69135 1.17398 1.04806 1.21758 1.02470 0.95097 0.81109 1.22124 0.97054 0.78947 0.95584 1.92844 1.88443 1.40186 1.96165 1.23716 0.93633 1.04932 0.95428 1.22464 0.95320 1.00549 0.94534 0.89237 1.22210 0.87306 0.93417 0.96459 1.86435 1.41724 1.45854 1.66556 1.23576 0.98592 1.03113 0.92130 1.21567 0.95845 0.91410 1.00883 1.21680 0.97755 1.01906 0.91038 1.21718 0.94243 0.92722 1.00462 1.21517 0.99591 0.96022 0.96547 0.92389 0.91309 0.88530 0.84408 0.90194 0.76531 1.21160 1.23650 0.89411 0.90696 0.93194 0.75145 0.89117 0.91544 0.90045 0.86966 0.91950 0.92299 0.75246 0.86069 0.89223 0.83018 0.81354 0.81445 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.08 71.24 0.72 0.34 16 2 C 0.03 0.36 6.01 41.02 0.25 0.60 16 3 C -0.21 -2.59 9.27 22.16 0.21 -2.38 16 4 C -0.17 -2.16 5.39 -19.98 -0.11 -2.27 16 5 C -0.05 -0.41 2.48 71.24 0.18 -0.24 16 6 O -0.56 -6.34 12.86 -148.98 -1.92 -8.26 16 7 Si 0.78 4.22 30.84 68.60 2.12 6.34 16 8 C 0.05 0.63 6.00 41.02 0.25 0.88 16 9 C -0.08 -0.59 9.88 71.24 0.70 0.12 16 10 N -0.39 -3.95 1.44 -319.53 -0.46 -4.41 16 11 C 0.15 0.79 4.52 38.50 0.17 0.96 16 12 C -0.15 -0.62 5.89 -19.99 -0.12 -0.74 16 13 C 0.54 4.71 7.77 86.71 0.67 5.38 16 14 O -0.54 -9.30 13.70 -3.98 -0.05 -9.35 16 15 N -0.72 -2.01 5.40 -466.24 -2.52 -4.53 16 16 C 0.12 0.25 5.42 86.38 0.47 0.72 16 17 C 0.08 -0.05 1.74 -10.27 -0.02 -0.07 16 18 F -0.20 -0.66 16.58 44.97 0.75 0.09 16 19 C -0.14 0.31 7.08 31.12 0.22 0.53 16 20 C -0.11 0.16 3.99 -10.27 -0.04 0.12 16 21 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 22 C 0.08 -0.25 6.88 71.98 0.50 0.25 16 23 O -0.60 -0.22 13.66 -148.98 -2.04 -2.26 16 24 C -0.14 0.42 7.10 31.12 0.22 0.64 16 25 C -0.08 0.25 9.53 22.52 0.21 0.46 16 26 C -0.11 0.74 10.02 22.24 0.22 0.96 16 27 C -0.07 0.45 10.03 22.30 0.22 0.67 16 28 C -0.12 0.07 9.96 22.36 0.22 0.29 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.18 7.84 -2.39 -0.02 0.16 16 31 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.14 1.46 6.55 -2.91 -0.02 1.44 16 33 H 0.08 0.31 7.96 -2.39 -0.02 0.29 16 34 H 0.39 0.80 8.74 -74.06 -0.65 0.16 16 35 H -0.28 -2.16 7.11 99.48 0.71 -1.45 16 36 H -0.31 -4.23 7.06 99.48 0.70 -3.53 16 37 H 0.09 0.27 8.14 -2.39 -0.02 0.26 16 38 H 0.07 0.67 7.87 -2.39 -0.02 0.66 16 39 H 0.05 0.43 7.83 -2.38 -0.02 0.41 16 40 H 0.41 -0.67 6.06 -92.71 -0.56 -1.23 16 41 H 0.09 0.18 7.84 -2.38 -0.02 0.16 16 42 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.11 -0.47 7.65 -2.39 -0.02 -0.49 16 45 H 0.06 -0.35 7.84 -2.39 -0.02 -0.37 16 46 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.40 -3.17 9.12 -74.06 -0.68 -3.84 16 48 H 0.12 -0.75 8.06 -2.39 -0.02 -0.77 16 49 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 50 H 0.15 -1.18 6.40 -2.91 -0.02 -1.20 16 51 H 0.17 -2.17 8.06 -2.91 -0.02 -2.19 16 52 H 0.17 -2.00 8.06 -2.91 -0.02 -2.02 16 53 H 0.14 -0.28 8.06 -2.91 -0.02 -0.31 16 Total: 0.00 -28.89 436.77 0.14 -28.75 By element: Atomic # 1 Polarization: -12.71 SS G_CDS: -0.89 Total: -13.60 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 5.15 Total: 7.23 kcal Atomic # 7 Polarization: -5.96 SS G_CDS: -2.98 Total: -8.94 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -4.00 Total: -19.87 kcal Atomic # 9 Polarization: -0.66 SS G_CDS: 0.75 Total: 0.09 kcal Atomic # 14 Polarization: 4.22 SS G_CDS: 2.12 Total: 6.34 kcal Total: -28.89 0.14 -28.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_12335856.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.310 kcal (2) G-P(sol) polarization free energy of solvation -28.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds