Wall clock time and date at job start Sun Mar 7 2021 08:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.47163 * 2 1 4 4 C 1.50699 * 109.46985 * 239.99873 * 2 1 3 5 5 C 1.38320 * 119.91807 * 119.97824 * 4 2 1 6 6 C 1.38471 * 120.27982 * 180.02562 * 5 4 2 7 7 Br 1.89095 * 119.93745 * 180.02562 * 6 5 4 8 8 C 1.38039 * 120.12324 * 359.71556 * 6 5 4 9 9 C 1.39577 * 119.84072 * 0.58388 * 8 6 5 10 10 C 1.47851 * 120.13865 * 179.69935 * 9 8 6 11 11 O 1.21553 * 119.99629 * 179.72278 * 10 9 8 12 12 N 1.34772 * 119.99604 * 359.71908 * 10 9 8 13 13 C 1.46505 * 119.99813 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47283 * 180.02562 * 13 12 10 15 15 F 1.39903 * 112.84944 * 316.19574 * 14 13 12 16 16 C 1.53781 * 113.69221 * 87.46423 * 14 13 12 17 17 C 1.54049 * 87.08031 * 139.98770 * 16 14 13 18 18 H 1.09000 * 113.61076 * 89.06984 * 17 16 14 19 19 C 1.52990 * 113.70090 * 220.05426 * 17 16 14 20 20 O 1.42903 * 109.47168 * 272.42623 * 19 17 16 21 21 C 1.53781 * 113.61503 * 185.00012 * 14 13 12 22 22 C 1.37981 * 119.92316 * 300.00191 * 4 2 1 23 23 H 0.96700 * 114.00020 * 59.99686 * 1 2 3 24 24 H 1.09006 * 109.47159 * 119.99953 * 2 1 3 25 25 H 1.48499 * 110.00216 * 298.68318 * 3 2 1 26 26 H 1.48508 * 109.99807 * 59.99994 * 3 2 1 27 27 H 1.07996 * 119.86232 * 359.97438 * 5 4 2 28 28 H 1.07995 * 120.07445 * 180.28195 * 8 6 5 29 29 H 0.97001 * 120.00396 * 0.02562 * 12 10 9 30 30 H 1.09000 * 109.47315 * 59.99868 * 13 12 10 31 31 H 1.09001 * 109.46863 * 300.00267 * 13 12 10 32 32 H 1.09005 * 113.61471 * 254.54353 * 16 14 13 33 33 H 1.08996 * 113.61178 * 25.35695 * 16 14 13 34 34 H 1.09007 * 109.47036 * 32.41747 * 19 17 16 35 35 H 1.08994 * 109.47734 * 152.42153 * 19 17 16 36 36 H 0.96700 * 114.00200 * 179.97438 * 20 19 17 37 37 H 1.09002 * 113.61445 * 334.48413 * 21 14 13 38 38 H 1.09002 * 113.61408 * 105.30144 * 21 14 13 39 39 H 1.07997 * 120.06542 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7261 -0.0365 -2.1401 6 6 3.1913 -0.6818 -3.2735 7 35 4.2777 0.2486 -4.5102 8 6 2.8687 -2.0049 -3.4989 9 6 2.0619 -2.6881 -2.5876 10 6 1.7068 -4.1034 -2.8259 11 8 1.0082 -4.6973 -2.0280 12 7 2.1578 -4.7348 -3.9278 13 6 1.8055 -6.1371 -4.1643 14 6 2.4409 -6.6087 -5.4738 15 9 2.3122 -5.6748 -6.5074 16 6 3.8707 -7.1499 -5.3071 17 6 3.4900 -8.2452 -6.3212 18 1 3.6759 -7.9641 -7.3578 19 6 4.0441 -9.6274 -5.9704 20 8 5.3550 -9.7689 -6.5212 21 6 2.0324 -8.0351 -5.8780 22 6 1.5970 -2.0315 -1.4472 23 1 -0.3933 0.4417 -0.7650 24 1 1.7924 -0.5138 0.8900 25 1 1.5879 2.4586 -1.2242 26 1 1.5615 2.4679 1.2086 27 1 2.9842 0.9976 -1.9661 28 1 3.2357 -2.5088 -4.3808 29 1 2.7156 -4.2609 -4.5644 30 1 0.7218 -6.2333 -4.2306 31 1 2.1748 -6.7483 -3.3408 32 1 4.6405 -6.4682 -5.6688 33 1 4.0792 -7.5317 -4.3077 34 1 4.0918 -9.7355 -4.8868 35 1 3.3913 -10.3962 -6.3838 36 1 5.7689 -10.6233 -6.3373 37 1 1.7379 -8.6604 -5.0351 38 1 1.3171 -8.0681 -6.6998 39 1 0.9764 -2.5562 -0.7360 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_12335870.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:14 Heat of formation + Delta-G solvation = -106.487871 kcal Electronic energy + Delta-G solvation = -25362.029650 eV Core-core repulsion = 21232.803007 eV Total energy + Delta-G solvation = -4129.226643 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.036 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.90860 -41.62017 -40.20564 -39.67857 -37.83805 -37.20667 -35.83902 -33.64379 -33.26953 -30.49618 -30.27908 -27.51171 -27.03697 -26.95426 -24.91242 -22.86315 -22.25276 -21.62208 -20.66575 -19.36101 -18.30373 -18.17721 -17.74321 -17.47074 -17.05470 -16.83461 -16.51563 -16.35272 -16.29303 -16.09587 -15.77879 -15.50026 -15.00544 -14.98312 -14.76054 -14.48819 -14.26654 -14.05261 -13.78973 -13.41216 -13.31074 -13.20580 -13.04957 -12.38468 -12.31660 -11.99346 -11.91797 -11.84894 -11.62567 -11.43047 -11.35873 -11.22033 -10.81940 -10.73830 -10.48093 -10.20280 -9.93312 -4.97442 -0.55344 -0.19086 0.41185 1.20197 1.47086 1.55364 1.81225 1.93652 2.42141 3.01434 3.09325 3.10680 3.23357 3.29668 3.33954 3.44183 3.52561 3.77943 3.80827 3.85013 3.93714 4.17990 4.22372 4.28057 4.34999 4.43643 4.52667 4.55479 4.59712 4.62798 4.70674 4.73572 4.83443 4.89091 4.89804 4.96910 5.04505 5.12278 5.35167 5.36921 6.20663 6.41554 6.88910 6.90672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.545 6.545 2 C -0.082 4.082 3 Si 0.761 3.239 4 C -0.113 4.113 5 C -0.059 4.059 6 C -0.099 4.099 7 Br -0.029 7.029 8 C -0.046 4.046 9 C -0.137 4.137 10 C 0.562 3.438 11 O -0.567 6.567 12 N -0.714 5.714 13 C 0.113 3.887 14 C 0.078 3.922 15 F -0.198 7.198 16 C -0.142 4.142 17 C -0.114 4.114 18 H 0.085 0.915 19 C 0.083 3.917 20 O -0.599 6.599 21 C -0.134 4.134 22 C -0.026 4.026 23 H 0.388 0.612 24 H 0.133 0.867 25 H -0.275 1.275 26 H -0.297 1.297 27 H 0.158 0.842 28 H 0.155 0.845 29 H 0.412 0.588 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.397 0.603 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.816 -2.046 -0.745 4.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.191 4.191 3 Si 0.665 3.335 4 C -0.114 4.114 5 C -0.078 4.078 6 C -0.179 4.179 7 Br 0.056 6.944 8 C -0.067 4.067 9 C -0.141 4.141 10 C 0.350 3.650 11 O -0.447 6.447 12 N -0.366 5.366 13 C -0.011 4.011 14 C 0.060 3.940 15 F -0.178 7.178 16 C -0.180 4.180 17 C -0.132 4.132 18 H 0.104 0.896 19 C 0.006 3.994 20 O -0.408 6.408 21 C -0.172 4.172 22 C -0.045 4.045 23 H 0.237 0.763 24 H 0.151 0.849 25 H -0.201 1.201 26 H -0.224 1.224 27 H 0.175 0.825 28 H 0.172 0.828 29 H 0.250 0.750 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.247 0.753 37 H 0.145 0.855 38 H 0.107 0.893 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.486 -1.010 -0.376 3.649 hybrid contribution -1.139 -0.640 -0.579 1.429 sum 2.348 -1.650 -0.954 3.024 Atomic orbital electron populations 1.86613 1.18121 1.80338 1.50236 1.25294 0.83726 1.11987 0.98072 0.94184 0.90251 0.71739 0.77313 1.20283 0.99226 0.94210 0.97697 1.21390 0.94455 1.00585 0.91417 1.21731 1.03109 0.95664 0.97356 1.96861 1.65559 1.75265 1.56671 1.21429 0.94230 0.92571 0.98437 1.19835 1.02793 0.93664 0.97764 1.18284 0.79218 0.86398 0.81058 1.90805 1.39173 1.68033 1.46672 1.45713 1.53360 1.13325 1.24196 1.21940 1.01163 0.81917 0.96098 1.22169 0.99523 0.88168 0.84154 1.92849 1.96863 1.67515 1.60605 1.23796 0.94453 0.98050 1.01663 1.22523 0.95659 0.95073 0.99944 0.89619 1.22226 0.83572 0.95820 0.97797 1.86442 1.31693 1.42670 1.79951 1.23576 0.96642 0.93118 1.03831 1.21263 0.94710 0.93534 0.95037 0.76268 0.84908 1.20081 1.22430 0.82516 0.82754 0.75001 0.90352 0.88030 0.90367 0.86519 0.91666 0.92338 0.75285 0.85527 0.89313 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.96 12.76 -148.98 -1.90 -2.86 16 2 C -0.08 0.16 2.82 71.24 0.20 0.36 16 3 Si 0.76 -2.71 29.78 68.60 2.04 -0.67 16 4 C -0.11 0.13 5.38 -19.91 -0.11 0.02 16 5 C -0.06 0.15 8.41 22.34 0.19 0.34 16 6 C -0.10 0.16 6.22 22.28 0.14 0.30 16 7 Br -0.03 0.05 33.69 -20.37 -0.69 -0.64 16 8 C -0.05 0.08 9.28 22.55 0.21 0.29 16 9 C -0.14 -0.25 5.87 -20.09 -0.12 -0.37 16 10 C 0.56 2.68 7.77 86.79 0.67 3.35 16 11 O -0.57 -6.90 16.35 -3.88 -0.06 -6.96 16 12 N -0.71 0.30 5.40 -465.97 -2.52 -2.22 16 13 C 0.11 -0.23 5.43 86.38 0.47 0.24 16 14 C 0.08 -0.25 1.74 -10.27 -0.02 -0.27 16 15 F -0.20 -0.34 16.58 44.97 0.75 0.41 16 16 C -0.14 0.59 7.09 31.21 0.22 0.81 16 17 C -0.11 0.35 4.00 -10.18 -0.04 0.31 16 18 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 19 C 0.08 -0.38 6.89 71.98 0.50 0.12 16 20 O -0.60 0.34 13.66 -148.98 -2.04 -1.70 16 21 C -0.13 0.77 7.09 31.12 0.22 0.99 16 22 C -0.03 -0.06 9.15 22.53 0.21 0.14 16 23 H 0.39 -1.54 8.70 -74.06 -0.64 -2.19 16 24 H 0.13 -0.48 7.96 -2.38 -0.02 -0.50 16 25 H -0.27 0.08 7.11 99.48 0.71 0.78 16 26 H -0.30 -1.27 7.11 99.48 0.71 -0.56 16 27 H 0.16 -0.94 4.86 -2.91 -0.01 -0.95 16 28 H 0.15 -0.87 6.41 -2.91 -0.02 -0.89 16 29 H 0.41 -1.55 6.06 -92.71 -0.56 -2.11 16 30 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.10 -0.36 7.85 -2.39 -0.02 -0.38 16 32 H 0.08 -0.19 8.14 -2.38 -0.02 -0.21 16 33 H 0.12 -0.81 7.67 -2.39 -0.02 -0.82 16 34 H 0.07 -0.50 7.85 -2.38 -0.02 -0.52 16 35 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H 0.40 -3.52 9.12 -74.06 -0.68 -4.20 16 37 H 0.13 -1.24 8.06 -2.39 -0.02 -1.26 16 38 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.14 0.69 7.65 -2.91 -0.02 0.67 16 Total: 0.00 -19.61 352.47 -2.39 -22.00 By element: Atomic # 1 Polarization: -13.28 SS G_CDS: -0.71 Total: -14.00 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 2.74 Total: 6.63 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -2.52 Total: -2.22 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -4.00 Total: -11.52 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.75 Total: 0.41 kcal Atomic # 14 Polarization: -2.71 SS G_CDS: 2.04 Total: -0.67 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.64 kcal Total: -19.61 -2.39 -22.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_12335870.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.488 kcal (2) G-P(sol) polarization free energy of solvation -19.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds