Wall clock time and date at job start Sun Mar 7 2021 08:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46612 * 2 1 4 4 C 1.52999 * 109.47178 * 188.54536 * 3 2 1 5 5 C 1.53000 * 109.47180 * 68.54550 * 3 2 1 6 6 C 1.50701 * 109.47476 * 185.63340 * 5 3 2 7 7 O 1.21279 * 120.00295 * 246.97027 * 6 5 3 8 8 N 1.34782 * 119.99558 * 66.96945 * 6 5 3 9 9 C 1.46506 * 119.99678 * 174.97754 * 8 6 5 10 10 C 1.53002 * 109.46700 * 180.02562 * 9 8 6 11 11 F 1.39899 * 112.91140 * 48.74535 * 10 9 8 12 12 C 1.53778 * 113.61145 * 179.97438 * 10 9 8 13 13 C 1.53783 * 87.08301 * 139.97684 * 12 10 9 14 14 H 1.09003 * 113.61037 * 89.11066 * 13 12 10 15 15 C 1.52992 * 113.62004 * 219.93412 * 13 12 10 16 16 O 1.42899 * 109.47308 * 183.47188 * 15 13 12 17 17 C 1.53781 * 113.61128 * 277.49194 * 10 9 8 18 18 N 1.46507 * 109.46990 * 65.63577 * 5 3 2 19 19 C 1.36344 * 125.63693 * 57.00978 * 18 5 3 20 20 C 1.34843 * 108.21886 * 180.02562 * 19 18 5 21 21 C 1.40887 * 107.41868 * 359.97438 * 20 19 18 22 22 C 1.34852 * 107.41679 * 359.73441 * 21 20 19 23 23 C 1.50697 * 125.89262 * 180.24958 * 22 21 20 24 24 O 1.42901 * 109.47466 * 227.65440 * 23 22 21 25 25 Si 1.86299 * 109.47093 * 347.65334 * 23 22 21 26 26 H 1.08994 * 109.47196 * 310.66995 * 1 2 3 27 27 H 1.08998 * 109.47216 * 70.67837 * 1 2 3 28 28 H 1.09005 * 109.46491 * 190.67350 * 1 2 3 29 29 H 1.09000 * 109.47284 * 240.00401 * 2 1 3 30 30 H 1.08996 * 109.47396 * 119.99769 * 2 1 3 31 31 H 1.09004 * 109.47736 * 308.54739 * 3 2 1 32 32 H 1.09003 * 109.46966 * 313.75279 * 4 3 2 33 33 H 1.09001 * 109.47392 * 73.75543 * 4 3 2 34 34 H 1.09002 * 109.47548 * 193.75518 * 4 3 2 35 35 H 1.08996 * 109.47631 * 305.63665 * 5 3 2 36 36 H 0.97000 * 120.00288 * 354.97506 * 8 6 5 37 37 H 1.08997 * 109.47137 * 59.99947 * 9 8 6 38 38 H 1.09000 * 109.46560 * 299.99829 * 9 8 6 39 39 H 1.09001 * 113.61757 * 25.43231 * 12 10 9 40 40 H 1.08996 * 113.69247 * 254.53718 * 12 10 9 41 41 H 1.09002 * 109.47256 * 303.47397 * 15 13 12 42 42 H 1.09005 * 109.46919 * 63.47329 * 15 13 12 43 43 H 0.96698 * 114.00096 * 179.97438 * 16 15 13 44 44 H 1.08999 * 113.60942 * 105.47444 * 17 10 9 45 45 H 1.08992 * 113.61803 * 334.57238 * 17 10 9 46 46 H 1.08003 * 125.88553 * 0.02562 * 19 18 5 47 47 H 1.08000 * 126.28740 * 180.02562 * 20 19 18 48 48 H 1.07999 * 126.29483 * 179.97438 * 21 20 19 49 49 H 1.09000 * 109.47458 * 107.65225 * 23 22 21 50 50 H 0.96696 * 114.00159 * 67.38217 * 24 23 22 51 51 H 1.48500 * 109.99949 * 179.97438 * 25 23 22 52 52 H 1.48502 * 110.00232 * 301.31491 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5548 1.4480 -0.2143 5 6 1.7124 2.0992 1.3425 6 6 2.0893 3.5575 1.2937 7 8 2.9961 3.9730 1.9836 8 7 1.4185 4.4001 0.4833 9 6 1.7100 5.8355 0.5162 10 6 0.8163 6.5605 -0.4921 11 9 -0.5309 6.1991 -0.3843 12 6 1.0443 8.0806 -0.5359 13 6 0.8944 7.9800 -2.0631 14 1 -0.1339 8.0862 -2.4087 15 6 1.8751 8.8650 -2.8349 16 8 1.6063 8.7654 -4.2348 17 6 1.3522 6.5173 -1.9329 18 7 2.4675 1.4352 2.4080 19 6 3.8236 1.3030 2.4570 20 6 4.1418 0.6363 3.5850 21 6 2.9382 0.3467 4.2575 22 6 1.9306 0.8527 3.5177 23 6 0.4639 0.7821 3.8565 24 8 -0.2696 0.3480 2.7095 25 14 0.2063 -0.4253 5.2517 26 1 -0.3633 0.6697 0.7794 27 1 -0.3633 0.3400 -0.9698 28 1 -0.3632 -1.0100 0.1904 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5572 1.9986 -0.8037 32 1 4.0161 0.7027 0.4337 33 1 3.7754 1.2110 -1.2552 34 1 3.9522 2.4342 0.0258 35 1 0.6448 2.0063 1.5417 36 1 0.7427 4.0561 -0.1216 37 1 2.7563 5.9997 0.2588 38 1 1.5167 6.2225 1.5166 39 1 2.0412 8.3821 -0.2140 40 1 0.2526 8.6562 -0.0564 41 1 1.7589 9.9006 -2.5154 42 1 2.8951 8.5358 -2.6364 43 1 2.1914 9.3021 -4.7868 44 1 0.8081 5.8300 -2.5806 45 1 2.4332 6.3911 -1.9931 46 1 4.5224 1.6692 1.7193 47 1 5.1367 0.3735 3.9131 48 1 2.8406 -0.1799 5.1953 49 1 0.1132 1.7684 4.1602 50 1 -0.0909 -0.5665 2.4512 51 1 -1.2362 -0.5036 5.5958 52 1 0.7095 -1.7670 4.8619 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_12360566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:17 Heat of formation + Delta-G solvation = -80.759711 kcal Electronic energy + Delta-G solvation = -34329.086026 eV Core-core repulsion = 29825.905177 eV Total energy + Delta-G solvation = -4503.180849 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.199 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -48.92568 -42.88474 -40.76406 -39.81538 -37.96835 -37.68600 -37.21673 -35.74131 -33.07641 -31.48443 -30.88499 -30.48463 -28.40018 -27.12323 -26.68170 -25.87966 -24.70467 -22.44234 -22.21458 -21.70830 -21.46720 -20.73609 -20.20751 -19.15840 -18.31742 -18.25076 -17.55127 -17.19726 -16.96012 -16.82737 -16.51727 -16.40351 -16.28900 -15.93625 -15.54004 -15.28946 -15.21004 -14.94126 -14.82158 -14.51790 -14.40047 -14.28352 -14.21889 -14.04367 -13.81949 -13.68805 -13.47657 -13.44487 -13.24425 -13.12269 -12.86141 -12.41940 -12.32550 -12.15722 -11.95966 -11.87286 -11.83455 -11.78354 -11.57156 -11.54045 -11.37910 -11.10257 -10.84414 -10.78479 -10.36224 -9.51970 -8.91836 -4.85298 1.09335 1.24282 1.31292 1.68517 1.76960 1.93029 2.11051 2.21031 2.98507 3.06824 3.09032 3.21446 3.29714 3.35890 3.47927 3.52268 3.61891 3.78294 3.79819 3.89681 4.13196 4.19312 4.27738 4.30534 4.31673 4.40469 4.43265 4.49775 4.51367 4.56546 4.58740 4.59130 4.65565 4.67881 4.70366 4.72769 4.80801 4.84884 4.86733 4.94571 4.98181 5.11312 5.13473 5.16189 5.25950 5.33855 5.34420 5.40824 5.51595 6.04699 6.14100 6.28261 6.40786 6.44511 6.86509 6.91191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.110 4.110 3 C -0.088 4.088 4 C -0.164 4.164 5 C 0.119 3.881 6 C 0.506 3.494 7 O -0.555 6.555 8 N -0.714 5.714 9 C 0.116 3.884 10 C 0.080 3.920 11 F -0.198 7.198 12 C -0.134 4.134 13 C -0.113 4.113 14 H 0.086 0.914 15 C 0.083 3.917 16 O -0.598 6.598 17 C -0.140 4.140 18 N -0.411 5.411 19 C 0.005 3.995 20 C -0.223 4.223 21 C -0.197 4.197 22 C -0.025 4.025 23 C -0.062 4.062 24 O -0.535 6.535 25 Si 0.786 3.214 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.143 0.857 36 H 0.413 0.587 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.397 0.603 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.167 0.833 47 H 0.143 0.857 48 H 0.157 0.843 49 H 0.116 0.884 50 H 0.382 0.618 51 H -0.292 1.292 52 H -0.283 1.283 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 1.857 -2.678 3.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.148 4.148 3 C -0.107 4.107 4 C -0.221 4.221 5 C 0.012 3.988 6 C 0.292 3.708 7 O -0.432 6.432 8 N -0.367 5.367 9 C -0.008 4.008 10 C 0.061 3.939 11 F -0.179 7.179 12 C -0.172 4.172 13 C -0.132 4.132 14 H 0.104 0.896 15 C 0.006 3.994 16 O -0.407 6.407 17 C -0.177 4.177 18 N -0.087 5.087 19 C -0.125 4.125 20 C -0.247 4.247 21 C -0.221 4.221 22 C -0.135 4.135 23 C -0.171 4.171 24 O -0.344 6.344 25 Si 0.689 3.311 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.160 0.840 36 H 0.250 0.750 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.143 0.857 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.247 0.753 44 H 0.097 0.903 45 H 0.133 0.867 46 H 0.184 0.816 47 H 0.160 0.840 48 H 0.174 0.826 49 H 0.133 0.867 50 H 0.232 0.768 51 H -0.220 1.220 52 H -0.209 1.209 Dipole moment (debyes) X Y Z Total from point charges 0.361 1.795 -1.945 2.671 hybrid contribution -0.059 -0.056 -1.482 1.484 sum 0.302 1.738 -3.427 3.855 Atomic orbital electron populations 1.22094 0.94671 1.02935 1.02836 1.21487 0.96766 0.94227 1.02305 1.21491 0.97738 0.98129 0.93317 1.22322 0.94729 1.01749 1.03296 1.21628 0.99345 0.88245 0.89570 1.20951 0.81821 0.88750 0.79313 1.90771 1.30402 1.78537 1.43492 1.45718 1.41809 1.07353 1.41846 1.21841 0.99943 0.79483 0.99502 1.22143 0.76970 0.97403 0.97364 1.92856 1.35000 1.92930 1.97083 1.23566 1.05712 0.92638 0.95317 1.22484 1.00382 0.95445 0.94856 0.89610 1.22217 0.97620 0.98897 0.80658 1.86438 1.63049 1.72906 1.18302 1.23706 1.03211 0.97469 0.93349 1.43516 1.05681 1.42483 1.17018 1.22185 0.84101 1.04844 1.01354 1.21081 0.99038 1.07605 0.97016 1.20858 0.91904 1.07568 1.01802 1.20986 0.95941 1.05827 0.90785 1.24834 0.85858 1.08904 0.97496 1.86565 1.67942 1.34340 1.45550 0.93100 0.78962 0.75781 0.83271 0.90390 0.92204 0.92363 0.90853 0.92782 0.87683 0.91203 0.90715 0.93402 0.84002 0.75005 0.88390 0.90984 0.85678 0.89300 0.92364 0.91749 0.75271 0.90320 0.86700 0.81617 0.83958 0.82599 0.86670 0.76753 1.21992 1.20862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.68 8.46 71.98 0.61 1.29 16 2 C -0.11 0.32 5.31 30.59 0.16 0.48 16 3 C -0.09 0.24 2.16 -10.79 -0.02 0.22 16 4 C -0.16 0.20 7.42 71.98 0.53 0.74 16 5 C 0.12 0.11 2.30 44.24 0.10 0.21 16 6 C 0.51 1.92 5.93 87.66 0.52 2.44 16 7 O -0.55 -6.41 15.43 -3.03 -0.05 -6.46 16 8 N -0.71 0.85 5.41 -463.04 -2.51 -1.65 16 9 C 0.12 -0.23 5.37 86.38 0.46 0.23 16 10 C 0.08 -0.25 1.67 -10.27 -0.02 -0.27 16 11 F -0.20 -0.40 16.80 44.97 0.76 0.35 16 12 C -0.13 0.74 7.10 31.12 0.22 0.96 16 13 C -0.11 0.35 3.98 -10.26 -0.04 0.30 16 14 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 15 C 0.08 -0.38 6.88 71.98 0.49 0.12 16 16 O -0.60 0.40 13.66 -148.98 -2.03 -1.63 16 17 C -0.14 0.59 7.08 31.13 0.22 0.82 16 18 N -0.41 -1.80 1.77 -491.51 -0.87 -2.67 16 19 C 0.01 0.03 7.64 83.21 0.64 0.67 16 20 C -0.22 -1.44 10.86 22.14 0.24 -1.20 16 21 C -0.20 -0.91 9.38 22.14 0.21 -0.70 16 22 C -0.02 -0.10 6.28 41.08 0.26 0.16 16 23 C -0.06 -0.03 2.66 71.24 0.19 0.16 16 24 O -0.54 0.24 8.36 -148.98 -1.25 -1.01 16 25 Si 0.79 -0.85 30.56 68.60 2.10 1.24 16 26 H 0.08 -0.23 3.79 -2.39 -0.01 -0.24 16 27 H 0.06 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H 0.06 -0.24 8.09 -2.38 -0.02 -0.26 16 29 H 0.07 -0.25 8.13 -2.39 -0.02 -0.27 16 30 H 0.05 0.02 7.56 -2.39 -0.02 0.00 16 31 H 0.11 -0.63 7.76 -2.38 -0.02 -0.65 16 32 H 0.07 0.05 5.46 -2.39 -0.01 0.04 16 33 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 34 H 0.05 0.07 6.43 -2.39 -0.02 0.06 16 35 H 0.14 0.02 4.57 -2.39 -0.01 0.01 16 36 H 0.41 -1.87 7.88 -92.71 -0.73 -2.60 16 37 H 0.10 -0.30 7.94 -2.39 -0.02 -0.32 16 38 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.13 -1.17 8.06 -2.39 -0.02 -1.19 16 40 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.06 -0.49 7.88 -2.38 -0.02 -0.51 16 43 H 0.40 -3.55 9.12 -74.06 -0.68 -4.23 16 44 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 45 H 0.11 -0.78 7.74 -2.39 -0.02 -0.80 16 46 H 0.17 0.88 5.40 -2.91 -0.02 0.86 16 47 H 0.14 0.57 8.06 -2.91 -0.02 0.54 16 48 H 0.16 0.02 6.34 -2.91 -0.02 0.01 16 49 H 0.12 0.02 7.96 -2.39 -0.02 0.00 16 50 H 0.38 -1.33 7.52 -74.06 -0.56 -1.89 16 51 H -0.29 -1.43 7.11 99.48 0.71 -0.72 16 52 H -0.28 -0.98 7.11 99.48 0.71 -0.28 16 Total: 0.00 -19.13 399.35 -0.03 -19.17 By element: Atomic # 1 Polarization: -13.02 SS G_CDS: -0.96 Total: -13.98 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 4.78 Total: 6.63 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -3.37 Total: -4.32 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -3.33 Total: -9.10 kcal Atomic # 9 Polarization: -0.40 SS G_CDS: 0.76 Total: 0.35 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: 2.10 Total: 1.24 kcal Total: -19.13 -0.03 -19.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_12360566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.594 kcal (2) G-P(sol) polarization free energy of solvation -19.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds