Wall clock time and date at job start Sun Mar 7 2021 08:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86299 * 109.47004 * 2 1 4 4 C 1.50706 * 109.47147 * 240.00515 * 2 1 3 5 5 C 1.38394 * 119.83121 * 119.72195 * 4 2 1 6 6 C 1.37892 * 120.17453 * 179.76605 * 5 4 2 7 7 C 1.39839 * 119.81980 * 0.50847 * 6 5 4 8 8 C 1.47206 * 120.16543 * 179.76848 * 7 6 5 9 9 C 1.34813 * 120.00136 * 359.97438 * 8 7 6 10 10 C 1.46426 * 119.99770 * 179.97438 * 9 8 7 11 11 O 1.21696 * 120.00443 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99651 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99996 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47229 * 180.02562 * 13 12 10 15 15 F 1.39899 * 112.84491 * 316.19163 * 14 13 12 16 16 C 1.53783 * 113.61861 * 87.49928 * 14 13 12 17 17 C 1.53780 * 87.08014 * 139.98017 * 16 14 13 18 18 H 1.08998 * 113.68707 * 89.12540 * 17 16 14 19 19 C 1.53003 * 113.61291 * 220.01784 * 17 16 14 20 20 O 1.42895 * 109.46907 * 272.49787 * 19 17 16 21 21 C 1.53781 * 113.61262 * 184.99921 * 14 13 12 22 22 C 1.39834 * 119.66447 * 359.74337 * 7 6 5 23 23 C 1.37896 * 119.82357 * 0.02562 * 22 7 6 24 24 H 0.96700 * 114.00205 * 299.99223 * 1 2 3 25 25 H 1.09001 * 109.47626 * 120.00659 * 2 1 3 26 26 H 1.48494 * 110.00213 * 300.00024 * 3 2 1 27 27 H 1.48501 * 109.99913 * 61.32272 * 3 2 1 28 28 H 1.08005 * 119.90994 * 0.02562 * 5 4 2 29 29 H 1.07995 * 120.09205 * 180.23148 * 6 5 4 30 30 H 1.08005 * 119.99871 * 179.97438 * 8 7 6 31 31 H 1.07996 * 119.99726 * 0.02562 * 9 8 7 32 32 H 0.97000 * 120.00680 * 0.02562 * 12 10 9 33 33 H 1.09004 * 109.46776 * 299.99874 * 13 12 10 34 34 H 1.09002 * 109.47378 * 59.99759 * 13 12 10 35 35 H 1.08995 * 113.60983 * 254.53226 * 16 14 13 36 36 H 1.08999 * 113.60941 * 25.43314 * 16 14 13 37 37 H 1.08995 * 109.46936 * 32.50034 * 19 17 16 38 38 H 1.08998 * 109.46845 * 152.50135 * 19 17 16 39 39 H 0.96702 * 113.99657 * 179.97438 * 20 19 17 40 40 H 1.08998 * 113.61336 * 334.56456 * 21 14 13 41 41 H 1.08999 * 113.61503 * 105.38753 * 21 14 13 42 42 H 1.07998 * 120.08817 * 179.97438 * 22 7 6 43 43 H 1.07996 * 119.91114 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 2.7220 -0.0326 -2.1421 6 6 3.1895 -0.6770 -3.2680 7 6 2.8538 -2.0158 -3.4928 8 6 3.3445 -2.7096 -4.6948 9 6 4.1191 -2.0543 -5.5824 10 6 4.6076 -2.7447 -6.7777 11 8 4.3140 -3.9099 -6.9702 12 7 5.3824 -2.0896 -7.6649 13 6 5.8707 -2.7801 -8.8612 14 6 6.7212 -1.8186 -9.6936 15 9 6.1485 -0.5474 -9.8087 16 6 8.2031 -1.7939 -9.2835 17 6 8.5357 -1.7217 -10.7832 18 1 8.5873 -0.7046 -11.1717 19 6 9.7415 -2.5734 -11.1852 20 8 10.9387 -1.8103 -11.0234 21 6 7.1837 -2.4097 -11.0359 22 6 2.0501 -2.6922 -2.5698 23 6 1.5944 -2.0353 -1.4462 24 1 -0.3933 0.4416 0.7651 25 1 1.7924 -0.5139 0.8899 26 1 1.5614 2.4679 -1.2084 27 1 1.5878 2.4585 1.2243 28 1 2.9770 1.0025 -1.9690 29 1 3.8094 -0.1480 -3.9765 30 1 3.0839 -3.7438 -4.8655 31 1 4.3799 -1.0203 -5.4115 32 1 5.6167 -1.1609 -7.5114 33 1 6.4763 -3.6365 -8.5645 34 1 5.0229 -3.1227 -9.4545 35 1 8.4879 -0.8995 -8.7295 36 1 8.5392 -2.7141 -8.8056 37 1 9.7872 -3.4598 -10.5527 38 1 9.6413 -2.8756 -12.2277 39 1 11.7450 -2.2888 -11.2601 40 1 7.2412 -3.4982 -11.0370 41 1 6.6448 -2.0134 -11.8964 42 1 1.7863 -3.7260 -2.7368 43 1 0.9733 -2.5562 -0.7327 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:21 Heat of formation + Delta-G solvation = -97.257526 kcal Electronic energy + Delta-G solvation = -25538.039913 eV Core-core repulsion = 21465.267772 eV Total energy + Delta-G solvation = -4072.772142 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.88487 -40.95502 -40.44148 -39.76726 -37.89504 -37.19699 -35.66633 -35.17536 -32.26624 -31.55340 -30.23384 -27.72903 -27.03768 -26.54126 -24.09298 -23.71840 -22.23794 -21.93569 -20.79249 -20.39743 -18.74204 -18.55746 -18.27132 -17.77322 -17.28386 -16.94511 -16.76780 -16.51562 -16.31146 -16.05100 -15.97501 -15.65845 -15.37184 -15.09158 -14.87091 -14.64075 -14.34192 -14.27352 -14.04563 -13.87308 -13.77363 -13.57913 -13.40465 -13.19983 -13.02424 -12.37777 -12.32534 -12.04964 -11.89122 -11.76137 -11.53074 -11.35385 -11.33339 -11.09801 -10.80933 -10.51376 -10.25452 -9.98566 -9.24596 -4.93807 -0.56749 0.39042 0.86123 1.28990 1.59479 1.94228 2.04685 2.19287 2.76975 3.03963 3.11700 3.16009 3.34514 3.35510 3.51058 3.59342 3.74878 3.82603 3.83721 3.93571 4.15018 4.20770 4.25685 4.32294 4.35755 4.39086 4.45226 4.53651 4.57044 4.60650 4.63695 4.71459 4.83143 4.84873 4.91655 4.96110 4.98303 5.08576 5.13239 5.25886 5.37609 5.39343 5.47596 5.58764 5.88848 6.41509 6.55744 6.89143 7.11087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.090 4.090 3 Si 0.765 3.235 4 C -0.075 4.075 5 C -0.125 4.125 6 C -0.095 4.095 7 C -0.084 4.084 8 C -0.015 4.015 9 C -0.212 4.212 10 C 0.545 3.455 11 O -0.588 6.588 12 N -0.715 5.715 13 C 0.113 3.887 14 C 0.080 3.920 15 F -0.198 7.198 16 C -0.140 4.140 17 C -0.114 4.114 18 H 0.086 0.914 19 C 0.083 3.917 20 O -0.599 6.599 21 C -0.135 4.135 22 C -0.101 4.101 23 C -0.108 4.108 24 H 0.395 0.605 25 H 0.097 0.903 26 H -0.298 1.298 27 H -0.288 1.288 28 H 0.147 0.853 29 H 0.157 0.843 30 H 0.127 0.873 31 H 0.160 0.840 32 H 0.416 0.584 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.397 0.603 40 H 0.125 0.875 41 H 0.088 0.912 42 H 0.140 0.860 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 0.397 1.483 5.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.198 4.198 3 Si 0.671 3.329 4 C -0.075 4.075 5 C -0.142 4.142 6 C -0.113 4.113 7 C -0.084 4.084 8 C -0.035 4.035 9 C -0.233 4.233 10 C 0.336 3.664 11 O -0.470 6.470 12 N -0.366 5.366 13 C -0.011 4.011 14 C 0.061 3.939 15 F -0.178 7.178 16 C -0.178 4.178 17 C -0.132 4.132 18 H 0.104 0.896 19 C 0.006 3.994 20 O -0.407 6.407 21 C -0.173 4.173 22 C -0.119 4.119 23 C -0.126 4.126 24 H 0.246 0.754 25 H 0.115 0.885 26 H -0.225 1.225 27 H -0.215 1.215 28 H 0.164 0.836 29 H 0.174 0.826 30 H 0.144 0.856 31 H 0.178 0.822 32 H 0.252 0.748 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.247 0.753 40 H 0.143 0.857 41 H 0.106 0.894 42 H 0.158 0.842 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.306 0.588 0.961 4.451 hybrid contribution -0.992 -0.020 0.284 1.032 sum 3.314 0.568 1.245 3.585 Atomic orbital electron populations 1.86541 1.18526 1.80743 1.51090 1.25086 0.84094 1.12002 0.98665 0.94163 0.90310 0.72027 0.76422 1.19712 0.97553 0.94474 0.95764 1.21130 0.98621 1.00303 0.94141 1.21636 0.98853 0.93399 0.97384 1.19120 0.99741 0.94535 0.94967 1.22366 0.91296 0.99260 0.90570 1.22968 1.03330 1.02264 0.94705 1.18682 0.77849 0.85949 0.83931 1.90815 1.59669 1.18558 1.77990 1.45684 1.51727 1.16533 1.22685 1.21850 0.98540 0.95075 0.85667 1.22152 0.93211 0.79460 0.99073 1.92844 1.86299 1.41812 1.96882 1.23728 0.91926 1.04973 0.97171 1.22486 0.93809 1.00437 0.96497 0.89594 1.22228 0.83642 0.93106 1.00434 1.86440 1.17781 1.45369 1.91142 1.23581 0.94886 1.03113 0.95722 1.21628 0.96125 1.00715 0.93430 1.21093 0.99220 0.94349 0.97940 0.75418 0.88515 1.22542 1.21525 0.83591 0.82560 0.85560 0.82228 0.74758 0.88549 0.90915 0.90320 0.86640 0.91698 0.92347 0.75280 0.85663 0.89359 0.84185 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.15 12.74 -148.98 -1.90 -3.05 16 2 C -0.09 0.09 2.81 71.24 0.20 0.29 16 3 Si 0.77 -2.07 29.77 68.60 2.04 -0.03 16 4 C -0.07 -0.13 5.43 -19.79 -0.11 -0.24 16 5 C -0.12 0.06 8.65 22.22 0.19 0.25 16 6 C -0.10 0.11 9.41 22.58 0.21 0.32 16 7 C -0.08 -0.12 5.87 -20.15 -0.12 -0.24 16 8 C -0.02 -0.03 9.46 23.84 0.23 0.20 16 9 C -0.21 -0.05 9.41 23.62 0.22 0.18 16 10 C 0.55 2.75 7.74 86.37 0.67 3.42 16 11 O -0.59 -7.82 16.23 -4.34 -0.07 -7.89 16 12 N -0.71 -0.09 5.45 -467.33 -2.55 -2.63 16 13 C 0.11 -0.09 5.42 86.38 0.47 0.38 16 14 C 0.08 -0.18 1.74 -10.27 -0.02 -0.20 16 15 F -0.20 -0.50 16.58 44.97 0.75 0.24 16 16 C -0.14 0.48 7.08 31.12 0.22 0.70 16 17 C -0.11 0.28 3.99 -10.27 -0.04 0.23 16 18 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 19 C 0.08 -0.33 6.88 71.98 0.50 0.16 16 20 O -0.60 0.12 13.66 -148.98 -2.03 -1.91 16 21 C -0.14 0.65 7.10 31.12 0.22 0.87 16 22 C -0.10 -0.19 9.80 22.57 0.22 0.03 16 23 C -0.11 -0.27 9.59 22.23 0.21 -0.06 16 24 H 0.40 -2.34 8.74 -74.06 -0.65 -2.98 16 25 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 26 H -0.30 -1.34 7.11 99.48 0.71 -0.64 16 27 H -0.29 -0.49 7.11 99.48 0.71 0.22 16 28 H 0.15 -0.68 4.85 -2.91 -0.01 -0.69 16 29 H 0.16 -1.07 6.17 -2.91 -0.02 -1.09 16 30 H 0.13 0.51 7.52 -2.91 -0.02 0.49 16 31 H 0.16 -1.02 6.07 -2.91 -0.02 -1.04 16 32 H 0.42 -1.61 8.01 -92.71 -0.74 -2.35 16 33 H 0.10 -0.18 7.84 -2.39 -0.02 -0.20 16 34 H 0.07 0.09 8.14 -2.39 -0.02 0.08 16 35 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.12 -0.70 7.65 -2.39 -0.02 -0.72 16 37 H 0.06 -0.46 7.84 -2.39 -0.02 -0.48 16 38 H 0.06 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.40 -3.41 9.12 -74.06 -0.68 -4.08 16 40 H 0.13 -1.09 8.06 -2.39 -0.02 -1.11 16 41 H 0.09 -0.37 8.14 -2.39 -0.02 -0.38 16 42 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 43 H 0.13 0.15 8.06 -2.91 -0.02 0.13 16 Total: 0.00 -23.46 365.68 -1.45 -24.90 By element: Atomic # 1 Polarization: -14.98 SS G_CDS: -0.96 Total: -15.94 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 3.28 Total: 6.31 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: -2.55 Total: -2.63 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -4.00 Total: -12.85 kcal Atomic # 9 Polarization: -0.50 SS G_CDS: 0.75 Total: 0.24 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.04 Total: -0.03 kcal Total: -23.46 -1.45 -24.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.353 kcal (2) G-P(sol) polarization free energy of solvation -23.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds