Wall clock time and date at job start Sun Mar 7 2021 08:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86310 * 109.47036 * 2 1 4 4 C 1.50703 * 109.47384 * 119.99877 * 2 1 3 5 5 C 1.34832 * 125.65064 * 65.25797 * 4 2 1 6 6 C 1.40795 * 107.04954 * 180.13509 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.62775 * 6 5 4 8 8 C 1.47569 * 125.94728 * 180.26566 * 7 6 5 9 9 C 1.39922 * 119.95362 * 359.97438 * 8 7 6 10 10 C 1.36425 * 120.27876 * 180.02562 * 9 8 7 11 11 C 1.39873 * 120.18577 * 359.97438 * 10 9 8 12 12 C 1.47292 * 120.04798 * 179.97438 * 11 10 9 13 13 O 1.21620 * 120.00118 * 179.97438 * 12 11 10 14 14 N 1.34780 * 119.99874 * 0.02562 * 12 11 10 15 15 C 1.46498 * 120.00019 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47213 * 180.02562 * 15 14 12 17 17 F 1.39901 * 112.85034 * 316.19866 * 16 15 14 18 18 C 1.53785 * 113.61509 * 87.50413 * 16 15 14 19 19 C 1.53776 * 87.08321 * 139.98226 * 18 16 15 20 20 H 1.09004 * 113.61657 * 89.11666 * 19 18 16 21 21 C 1.52997 * 113.69239 * 220.00865 * 19 18 16 22 22 O 1.42909 * 109.47049 * 272.53620 * 21 19 18 23 23 C 1.53778 * 87.08082 * 334.56816 * 19 18 16 24 24 C 1.40407 * 119.90923 * 359.97438 * 11 10 9 25 25 O 1.35679 * 120.14167 * 179.97438 * 24 11 10 26 26 C 1.38284 * 119.72088 * 359.74425 * 24 11 10 27 27 O 1.34226 * 125.65134 * 244.97269 * 4 2 1 28 28 H 0.96697 * 113.99670 * 299.99439 * 1 2 3 29 29 H 1.09005 * 109.47504 * 240.00193 * 2 1 3 30 30 H 1.48490 * 109.99973 * 178.68216 * 3 2 1 31 31 H 1.48505 * 109.99738 * 300.00379 * 3 2 1 32 32 H 1.08005 * 126.47500 * 0.02562 * 5 4 2 33 33 H 1.08002 * 126.63743 * 179.89704 * 6 5 4 34 34 H 1.07995 * 119.86085 * 0.02562 * 9 8 7 35 35 H 1.07995 * 119.90808 * 180.02562 * 10 9 8 36 36 H 0.96996 * 120.00029 * 0.02562 * 14 12 11 37 37 H 1.09003 * 109.47258 * 300.00116 * 15 14 12 38 38 H 1.09002 * 109.46891 * 59.99965 * 15 14 12 39 39 H 1.09008 * 113.61267 * 254.52917 * 18 16 15 40 40 H 1.08997 * 113.61463 * 25.42811 * 18 16 15 41 41 H 1.08996 * 109.47030 * 32.53061 * 21 19 18 42 42 H 1.08994 * 109.47650 * 152.53576 * 21 19 18 43 43 H 0.96697 * 113.99379 * 179.97438 * 22 21 19 44 44 H 1.08995 * 113.61448 * 270.88412 * 23 19 18 45 45 H 1.08998 * 113.61824 * 139.98068 * 23 19 18 46 46 H 0.96701 * 114.00242 * 89.99543 * 25 24 11 47 47 H 1.08001 * 120.09216 * 180.27220 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7611 -2.0190 1.5070 6 6 2.3804 -2.2628 2.7477 7 6 2.9082 -1.0784 3.1617 8 6 3.6583 -0.8543 4.4126 9 6 3.8792 -1.9177 5.2948 10 6 4.5713 -1.7179 6.4533 11 6 5.0657 -0.4476 6.7670 12 6 5.8121 -0.2352 8.0189 13 8 6.2420 0.8696 8.2907 14 7 6.0196 -1.2654 8.8629 15 6 6.7624 -1.0543 10.1078 16 6 6.8557 -2.3740 10.8761 17 9 5.6461 -3.0766 10.8978 18 6 8.0641 -3.2364 10.4749 19 6 8.2229 -3.5690 11.9678 20 1 7.6550 -4.4444 12.2830 21 6 9.6782 -3.6040 12.4385 22 8 10.2147 -4.9122 12.2309 23 6 7.5130 -2.2364 12.2595 24 6 4.8495 0.6248 5.8869 25 8 5.3265 1.8591 6.1868 26 6 4.1525 0.4167 4.7109 27 8 2.6272 -0.1464 2.2302 28 1 -0.3933 0.4416 0.7651 29 1 1.7924 -0.5138 -0.8900 30 1 3.5345 1.7704 0.0321 31 1 1.5614 2.4680 -1.2085 32 1 1.2453 -2.7430 0.8936 33 1 2.4312 -3.2078 3.2681 34 1 3.5002 -2.9007 5.0576 35 1 4.7387 -2.5430 7.1297 36 1 5.6777 -2.1467 8.6457 37 1 7.7660 -0.6975 9.8760 38 1 6.2455 -0.3138 10.7182 39 1 7.8011 -4.0980 9.8612 40 1 8.8942 -2.6611 10.0649 41 1 10.2610 -2.8782 11.8713 42 1 9.7232 -3.3570 13.4991 43 1 11.1365 -5.0076 12.5070 44 1 8.1925 -1.3877 12.3376 45 1 6.8052 -2.2906 13.0866 46 1 6.2198 2.0265 5.8564 47 1 3.9865 1.2364 4.0275 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500592_12807986.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:57:41 Heat of formation + Delta-G solvation = -131.234489 kcal Electronic energy + Delta-G solvation = -33453.045643 eV Core-core repulsion = 28484.983484 eV Total energy + Delta-G solvation = -4968.062158 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 378.140 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -48.88597 -43.75495 -41.58528 -40.07311 -39.50909 -38.10832 -37.84029 -37.17463 -35.65870 -34.26491 -33.50260 -31.38238 -30.82845 -29.92814 -27.57925 -27.03123 -26.53937 -24.38948 -24.07348 -22.56162 -22.17182 -22.00060 -21.35838 -20.67461 -19.81396 -18.97145 -18.53706 -18.27185 -17.71116 -17.61202 -17.44740 -17.01756 -16.71896 -16.62790 -16.55617 -16.21296 -16.02819 -15.96546 -15.75767 -15.52669 -15.25589 -14.93896 -14.66320 -14.40603 -14.28602 -14.25711 -14.00585 -13.88771 -13.79145 -13.61883 -13.50538 -13.38257 -13.19454 -12.83380 -12.72975 -12.36714 -12.25978 -11.93336 -11.87710 -11.50725 -11.33441 -11.14960 -10.97477 -10.80614 -10.74871 -10.59746 -10.25123 -9.97245 -9.03356 -5.04543 -0.81926 0.12831 0.62399 1.13095 1.38349 1.44336 1.73366 1.86350 1.88045 1.93253 2.61633 2.99521 3.03677 3.11464 3.14886 3.27795 3.34715 3.40760 3.51901 3.59876 3.65763 3.82942 3.86349 3.96913 3.98768 4.19785 4.25140 4.30470 4.35854 4.38482 4.45105 4.54204 4.60552 4.62786 4.64595 4.68764 4.71840 4.77792 4.84668 4.87404 4.91342 4.98456 5.04172 5.08015 5.19467 5.21242 5.38441 5.40865 5.50871 5.95251 6.33729 6.58839 6.69621 6.88662 7.05826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.025 4.025 3 Si 0.768 3.232 4 C -0.052 4.052 5 C -0.184 4.184 6 C -0.173 4.173 7 C 0.006 3.994 8 C 0.027 3.973 9 C -0.110 4.110 10 C -0.053 4.053 11 C -0.180 4.180 12 C 0.558 3.442 13 O -0.558 6.558 14 N -0.716 5.716 15 C 0.115 3.885 16 C 0.080 3.920 17 F -0.197 7.197 18 C -0.141 4.141 19 C -0.114 4.114 20 H 0.086 0.914 21 C 0.083 3.917 22 O -0.599 6.599 23 C -0.135 4.135 24 C 0.164 3.836 25 O -0.493 6.493 26 C -0.150 4.150 27 O -0.173 6.173 28 H 0.399 0.601 29 H 0.139 0.861 30 H -0.294 1.294 31 H -0.277 1.277 32 H 0.165 0.835 33 H 0.180 0.820 34 H 0.167 0.833 35 H 0.164 0.836 36 H 0.412 0.588 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.397 0.603 44 H 0.125 0.875 45 H 0.088 0.912 46 H 0.409 0.591 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.260 -3.445 1.740 4.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.135 4.135 3 Si 0.673 3.327 4 C -0.102 4.102 5 C -0.203 4.203 6 C -0.192 4.192 7 C -0.044 4.044 8 C 0.026 3.974 9 C -0.128 4.128 10 C -0.072 4.072 11 C -0.184 4.184 12 C 0.347 3.653 13 O -0.438 6.438 14 N -0.369 5.369 15 C -0.009 4.009 16 C 0.061 3.939 17 F -0.178 7.178 18 C -0.178 4.178 19 C -0.133 4.133 20 H 0.104 0.896 21 C 0.006 3.994 22 O -0.407 6.407 23 C -0.173 4.173 24 C 0.118 3.882 25 O -0.306 6.306 26 C -0.169 4.169 27 O -0.070 6.070 28 H 0.250 0.750 29 H 0.156 0.844 30 H -0.221 1.221 31 H -0.203 1.203 32 H 0.183 0.817 33 H 0.198 0.802 34 H 0.185 0.815 35 H 0.182 0.818 36 H 0.250 0.750 37 H 0.117 0.883 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.247 0.753 44 H 0.143 0.857 45 H 0.107 0.893 46 H 0.269 0.731 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.063 -2.111 1.057 3.135 hybrid contribution 0.726 -0.965 -0.246 1.233 sum 2.790 -3.077 0.811 4.232 Atomic orbital electron populations 1.86531 1.15931 1.82097 1.50326 1.24438 0.85392 1.11005 0.92705 0.93324 0.78198 0.75794 0.85391 1.23240 1.00469 0.94255 0.92258 1.21834 1.04255 0.95815 0.98438 1.22239 1.00932 0.98975 0.97048 1.20548 1.04588 0.87926 0.91298 1.17927 0.95275 0.93974 0.90199 1.21022 0.99338 0.99469 0.92988 1.21113 0.94175 0.95172 0.96723 1.20493 1.05626 0.95357 0.96922 1.18181 0.79398 0.84056 0.83680 1.90822 1.51771 1.24906 1.76270 1.45689 1.57302 1.12704 1.21240 1.21868 0.98678 0.95834 0.84563 1.22151 0.81312 0.90969 0.99447 1.92845 1.47234 1.80373 1.97325 1.23737 0.96787 1.00053 0.97246 1.22488 0.96140 0.98283 0.96357 0.89554 1.22230 0.92849 0.84269 1.00084 1.86441 1.33689 1.32325 1.88285 1.23582 0.99896 0.98674 0.95140 1.18446 0.94576 0.84069 0.91140 1.84731 1.37305 1.28271 1.80319 1.21601 1.00789 0.97677 0.96821 1.83921 1.57873 1.38432 1.26820 0.75006 0.84416 1.22084 1.20343 0.81710 0.80234 0.81525 0.81845 0.74988 0.88322 0.90824 0.90223 0.86624 0.91706 0.92369 0.75304 0.85651 0.89335 0.73064 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.78 12.88 -148.98 -1.92 -1.14 16 2 C -0.02 0.03 2.98 71.24 0.21 0.24 16 3 Si 0.77 -0.71 32.11 68.60 2.20 1.49 16 4 C -0.05 -0.06 6.21 24.90 0.15 0.10 16 5 C -0.18 -0.05 10.78 22.11 0.24 0.19 16 6 C -0.17 0.17 10.26 22.40 0.23 0.40 16 7 C 0.01 0.01 7.02 24.24 0.17 0.18 16 8 C 0.03 0.02 5.87 -20.08 -0.12 -0.10 16 9 C -0.11 0.42 9.48 22.25 0.21 0.63 16 10 C -0.05 0.19 9.47 22.24 0.21 0.40 16 11 C -0.18 -0.51 5.89 -19.97 -0.12 -0.63 16 12 C 0.56 3.10 7.75 86.62 0.67 3.77 16 13 O -0.56 -7.22 15.14 16.90 0.26 -6.96 16 14 N -0.72 0.25 5.40 -466.51 -2.52 -2.26 16 15 C 0.11 -0.19 5.42 86.38 0.47 0.28 16 16 C 0.08 -0.26 1.74 -10.27 -0.02 -0.28 16 17 F -0.20 -0.27 16.58 44.97 0.75 0.48 16 18 C -0.14 0.62 7.08 31.12 0.22 0.84 16 19 C -0.11 0.36 3.98 -10.27 -0.04 0.32 16 20 H 0.09 0.05 8.14 -2.38 -0.02 0.03 16 21 C 0.08 -0.38 6.89 71.98 0.50 0.11 16 22 O -0.60 0.43 13.66 -148.98 -2.04 -1.61 16 23 C -0.13 0.75 7.10 31.12 0.22 0.97 16 24 C 0.16 0.80 6.71 22.81 0.15 0.95 16 25 O -0.49 -3.36 11.56 -68.97 -0.80 -4.16 16 26 C -0.15 -0.43 9.65 22.61 0.22 -0.21 16 27 O -0.17 -0.51 8.79 -6.02 -0.05 -0.57 16 28 H 0.40 -3.52 8.70 -74.06 -0.64 -4.16 16 29 H 0.14 -0.33 7.96 -2.38 -0.02 -0.35 16 30 H -0.29 -1.73 7.11 99.48 0.71 -1.02 16 31 H -0.28 -1.17 7.11 99.48 0.71 -0.47 16 32 H 0.17 -0.37 8.06 -2.91 -0.02 -0.40 16 33 H 0.18 -1.22 7.24 -2.91 -0.02 -1.24 16 34 H 0.17 -1.62 6.95 -2.91 -0.02 -1.64 16 35 H 0.16 -1.58 6.38 -2.91 -0.02 -1.60 16 36 H 0.41 -1.88 6.03 -92.71 -0.56 -2.44 16 37 H 0.10 -0.30 7.84 -2.39 -0.02 -0.32 16 38 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.08 -0.24 8.14 -2.38 -0.02 -0.26 16 40 H 0.12 -0.81 7.65 -2.39 -0.02 -0.83 16 41 H 0.06 -0.50 7.85 -2.39 -0.02 -0.52 16 42 H 0.06 -0.37 8.14 -2.39 -0.02 -0.38 16 43 H 0.40 -3.56 9.12 -74.06 -0.68 -4.23 16 44 H 0.13 -1.18 8.06 -2.39 -0.02 -1.20 16 45 H 0.09 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.41 -0.20 9.06 -74.06 -0.67 -0.87 16 47 H 0.14 0.29 7.90 -2.91 -0.02 0.27 16 Total: 0.00 -26.64 404.13 -1.97 -28.61 By element: Atomic # 1 Polarization: -20.62 SS G_CDS: -1.43 Total: -22.06 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 3.58 Total: 8.18 kcal Atomic # 7 Polarization: 0.25 SS G_CDS: -2.52 Total: -2.26 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -4.55 Total: -14.43 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 0.75 Total: 0.48 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: 2.20 Total: 1.49 kcal Total: -26.64 -1.97 -28.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500592_12807986.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.627 kcal (2) G-P(sol) polarization free energy of solvation -26.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds